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Conserved domains on  [gi|1356582553|ref|WP_105274819|]
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putative frv operon regulatory protein [Escherichia sp. MOD1-EC7003]

Protein Classification

putative frv operon regulatory protein( domain architecture ID 11484511)

putative frv operon regulatory protein could be involved in the regulation of the transcription of the FRV operon; contains an N-terminal BglG family transcription antiterminator and a C-terminal PTS sugar transporter subunit IIA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09863 PRK09863
putative frv operon regulatory protein; Provisional
 1-580 0e+00

putative frv operon regulatory protein; Provisional


:

Pssm-ID: 182121 [Multi-domain]  Cd Length: 584  Bit Score: 886.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553   1 MLNERQLKIIDLLEQQPRTPSELAQQTGVSGRTILRDIDYLNFTLNGKARISASGSAGYQLEIFERRSFFQLLQKHDNDD 80
Cdd:PRK09863    1 MLNERELKIVDLLEQQDRSGGELAQQLGVSRRTIVRDIAYINFTLNGKAIGSISGSAKYHLEILNRRSLFQLLQKSDNED 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553  81 RLLAM-LLLNTFTPRAQLASALNLPETWVAERLPRLKQRYERTCCLTSRPGLGHFIDETEEKRVILLANLLRKDPFLIPL 159
Cdd:PRK09863   81 RLLLLrLLLNTFTPMAQLASALNLSRTWVAERLPRLNQRYERICCIASRPGLGHFIDETEEKRIDILANLIRKDPQLIPK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 160 AGVTRDNFQHLSS-ACDNQHRWPLMQGDYLSSLILAIYALRNQLTDEWPDYPGNEIKQIVEQSGLFLGDNAVRALTGLIE 238
Cdd:PRK09863  161 AGPTRDNLQHLSRtACDNQHRWPLMQGDYLSSLILAIYALRNQLTDEWPQYPGDEIKQIVEHSGLFLGDNAVRTLTGLIE 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 239 KQHQQAQVISTDNVQGLLQRVPGIASLNIIDTQLVENITGHLLRCLAAPVWIGEHRQSSMINMKAAWPAAFDMSLYFITL 318
Cdd:PRK09863  241 KQHQQAQVISADNVQQLLQRVPGIASLNAIDTQLVENIFGHLLRCLAFPVWIAEHRQSSINNLKAQNPAAFDMALHFITL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 319 LREQLDIPLFDSDLIGLYFACALERHQNERQPIILLSDQNAIATINQLAIERDVLHCRVIIARSLSELVAIREEIEPLLI 398
Cdd:PRK09863  321 LREQLDIPLFDSDLIALYFACALERHQNERVPILLLADQNSIATINQLIIEQKVLNIRVIIVRSLSELEAIREEIEPLLI 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 399 INNSHYL--LDDAVNNYITVKNIITAAGIEQIKHFLATAFIRQQPERFFSAPGSFHYSNVRGESWQHITRKICAQLVTQH 476
Cdd:PRK09863  401 INNSHYLvdLQDAINFYITFKNVITAAGIEQLKHLLATAYIRQNPERFLSAPGSFHYSNVRGEKWQHVTRQICAQLVAQH 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 477 HITADEAQRIIAREDEGENLIVNRLAIPHCWSEQERRFRGFFITLAQPIEVNNEVINHVLIACAAADARHELKIFSYLAS 556
Cdd:PRK09863  481 LLTADEAQRIIAREGAGNQLILNHLSIPHCWTEQERRYRGFAITLAQPIEVNNEVIYLVLIVLAAADAAHELKIFSYLYS 560

                         570       580
                  ....*....|....*....|....
gi 1356582553 557 VLCQHPAETIAGLTGYEGFMALLR 580
Cdd:PRK09863  561 VLCQHPAEVIAGVTGYEAFIELLH 584
 
Name Accession Description Interval E-value
PRK09863 PRK09863
putative frv operon regulatory protein; Provisional
 1-580 0e+00

putative frv operon regulatory protein; Provisional


Pssm-ID: 182121 [Multi-domain]  Cd Length: 584  Bit Score: 886.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553   1 MLNERQLKIIDLLEQQPRTPSELAQQTGVSGRTILRDIDYLNFTLNGKARISASGSAGYQLEIFERRSFFQLLQKHDNDD 80
Cdd:PRK09863    1 MLNERELKIVDLLEQQDRSGGELAQQLGVSRRTIVRDIAYINFTLNGKAIGSISGSAKYHLEILNRRSLFQLLQKSDNED 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553  81 RLLAM-LLLNTFTPRAQLASALNLPETWVAERLPRLKQRYERTCCLTSRPGLGHFIDETEEKRVILLANLLRKDPFLIPL 159
Cdd:PRK09863   81 RLLLLrLLLNTFTPMAQLASALNLSRTWVAERLPRLNQRYERICCIASRPGLGHFIDETEEKRIDILANLIRKDPQLIPK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 160 AGVTRDNFQHLSS-ACDNQHRWPLMQGDYLSSLILAIYALRNQLTDEWPDYPGNEIKQIVEQSGLFLGDNAVRALTGLIE 238
Cdd:PRK09863  161 AGPTRDNLQHLSRtACDNQHRWPLMQGDYLSSLILAIYALRNQLTDEWPQYPGDEIKQIVEHSGLFLGDNAVRTLTGLIE 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 239 KQHQQAQVISTDNVQGLLQRVPGIASLNIIDTQLVENITGHLLRCLAAPVWIGEHRQSSMINMKAAWPAAFDMSLYFITL 318
Cdd:PRK09863  241 KQHQQAQVISADNVQQLLQRVPGIASLNAIDTQLVENIFGHLLRCLAFPVWIAEHRQSSINNLKAQNPAAFDMALHFITL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 319 LREQLDIPLFDSDLIGLYFACALERHQNERQPIILLSDQNAIATINQLAIERDVLHCRVIIARSLSELVAIREEIEPLLI 398
Cdd:PRK09863  321 LREQLDIPLFDSDLIALYFACALERHQNERVPILLLADQNSIATINQLIIEQKVLNIRVIIVRSLSELEAIREEIEPLLI 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 399 INNSHYL--LDDAVNNYITVKNIITAAGIEQIKHFLATAFIRQQPERFFSAPGSFHYSNVRGESWQHITRKICAQLVTQH 476
Cdd:PRK09863  401 INNSHYLvdLQDAINFYITFKNVITAAGIEQLKHLLATAYIRQNPERFLSAPGSFHYSNVRGEKWQHVTRQICAQLVAQH 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 477 HITADEAQRIIAREDEGENLIVNRLAIPHCWSEQERRFRGFFITLAQPIEVNNEVINHVLIACAAADARHELKIFSYLAS 556
Cdd:PRK09863  481 LLTADEAQRIIAREGAGNQLILNHLSIPHCWTEQERRYRGFAITLAQPIEVNNEVIYLVLIVLAAADAAHELKIFSYLYS 560

                         570       580
                  ....*....|....*....|....
gi 1356582553 557 VLCQHPAETIAGLTGYEGFMALLR 580
Cdd:PRK09863  561 VLCQHPAEVIAGVTGYEAFIELLH 584
PTS_IIA_fru cd00211
PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 455-579 4.43e-21

PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


Pssm-ID: 238129 [Multi-domain]  Cd Length: 136  Bit Score: 89.54  E-value: 4.43e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 455 NVRGESWQHITRKICAQLVTQHHITADEAQRIIAREDEGENLIVNRLAIPHCWSEQERRFRGFFITLAQPIEVNNE--VI 532
Cdd:cd00211     9 NLKAKSKEEAIEELAQLLVAAGYVEEEYIEALLEREKEGSTGIGNGIAIPHAKSEAVKKPGIAVLRLKEPVDFGSLdgQP 88

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1356582553 533 NHVLIACAAADARHELKIFSYLASVL-CQHPAETIAGLTGYEGFMALL 579
Cdd:cd00211    89 VHLIFLLAAPDSNEHLKALSQLARLLsDEEFVEQLLNAQSKEEILALL 136
PTS_EIIA_2 pfam00359
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;
455-558 1.41e-10

Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;


Pssm-ID: 459780 [Multi-domain]  Cd Length: 139  Bit Score: 59.53  E-value: 1.41e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 455 NVRGESWQHITRKICAQLVTQHHITADEAQRIIAREDEGENLIVNRLAIPHCWSEQERRFRGFFITLAQPIEVN---NEV 531
Cdd:pfam00359  10 NLEAKSKEEAIEFLADKLVEAGYVEPAYLEAILEREKEGSTGIGNGIAIPHARSEAVKKPGIAVLTLKEPVDFGsedGKP 89

                          90       100
                  ....*....|....*....|....*..
gi 1356582553 532 INHVLIACAAADARHELKIFSYLASVL 558
Cdd:pfam00359  90 VKLIFLLAAPDNEASHLKILSQLARLL 116
PtsN COG1762
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate ...
 455-581 1.81e-10

Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 441368 [Multi-domain]  Cd Length: 150  Bit Score: 59.48  E-value: 1.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 455 NVRGESWQHITRKICAQLVTQHHITADEA--QRIIAREDEGENLIVNRLAIPHCWSEQERRFRGFFITLAQPIEVNNEVI 532
Cdd:COG1762    15 DLEASSKEEAIEELAELLAEKGYVLDKEEylEALLEREELGSTGIGPGIAIPHARPEGVKKPGIAVARLKEPVDFGAMDG 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1356582553 533 NHV----LIACAAADARHELKIFSYLASVLcQHPA--ETIAGLTGYEGFMALLRQ 581
Cdd:COG1762    95 EPVdlvfLLAAPEDDSEEHLKLLAELARLL-SDEEfrEKLLNAKSPEEILELLKE 148
 
Name Accession Description Interval E-value
PRK09863 PRK09863
putative frv operon regulatory protein; Provisional
 1-580 0e+00

putative frv operon regulatory protein; Provisional


Pssm-ID: 182121 [Multi-domain]  Cd Length: 584  Bit Score: 886.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553   1 MLNERQLKIIDLLEQQPRTPSELAQQTGVSGRTILRDIDYLNFTLNGKARISASGSAGYQLEIFERRSFFQLLQKHDNDD 80
Cdd:PRK09863    1 MLNERELKIVDLLEQQDRSGGELAQQLGVSRRTIVRDIAYINFTLNGKAIGSISGSAKYHLEILNRRSLFQLLQKSDNED 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553  81 RLLAM-LLLNTFTPRAQLASALNLPETWVAERLPRLKQRYERTCCLTSRPGLGHFIDETEEKRVILLANLLRKDPFLIPL 159
Cdd:PRK09863   81 RLLLLrLLLNTFTPMAQLASALNLSRTWVAERLPRLNQRYERICCIASRPGLGHFIDETEEKRIDILANLIRKDPQLIPK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 160 AGVTRDNFQHLSS-ACDNQHRWPLMQGDYLSSLILAIYALRNQLTDEWPDYPGNEIKQIVEQSGLFLGDNAVRALTGLIE 238
Cdd:PRK09863  161 AGPTRDNLQHLSRtACDNQHRWPLMQGDYLSSLILAIYALRNQLTDEWPQYPGDEIKQIVEHSGLFLGDNAVRTLTGLIE 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 239 KQHQQAQVISTDNVQGLLQRVPGIASLNIIDTQLVENITGHLLRCLAAPVWIGEHRQSSMINMKAAWPAAFDMSLYFITL 318
Cdd:PRK09863  241 KQHQQAQVISADNVQQLLQRVPGIASLNAIDTQLVENIFGHLLRCLAFPVWIAEHRQSSINNLKAQNPAAFDMALHFITL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 319 LREQLDIPLFDSDLIGLYFACALERHQNERQPIILLSDQNAIATINQLAIERDVLHCRVIIARSLSELVAIREEIEPLLI 398
Cdd:PRK09863  321 LREQLDIPLFDSDLIALYFACALERHQNERVPILLLADQNSIATINQLIIEQKVLNIRVIIVRSLSELEAIREEIEPLLI 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 399 INNSHYL--LDDAVNNYITVKNIITAAGIEQIKHFLATAFIRQQPERFFSAPGSFHYSNVRGESWQHITRKICAQLVTQH 476
Cdd:PRK09863  401 INNSHYLvdLQDAINFYITFKNVITAAGIEQLKHLLATAYIRQNPERFLSAPGSFHYSNVRGEKWQHVTRQICAQLVAQH 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 477 HITADEAQRIIAREDEGENLIVNRLAIPHCWSEQERRFRGFFITLAQPIEVNNEVINHVLIACAAADARHELKIFSYLAS 556
Cdd:PRK09863  481 LLTADEAQRIIAREGAGNQLILNHLSIPHCWTEQERRYRGFAITLAQPIEVNNEVIYLVLIVLAAADAAHELKIFSYLYS 560

                         570       580
                  ....*....|....*....|....
gi 1356582553 557 VLCQHPAETIAGLTGYEGFMALLR 580
Cdd:PRK09863  561 VLCQHPAEVIAGVTGYEAFIELLH 584
PTS_IIA_fru cd00211
PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: ...
 455-579 4.43e-21

PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.


Pssm-ID: 238129 [Multi-domain]  Cd Length: 136  Bit Score: 89.54  E-value: 4.43e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 455 NVRGESWQHITRKICAQLVTQHHITADEAQRIIAREDEGENLIVNRLAIPHCWSEQERRFRGFFITLAQPIEVNNE--VI 532
Cdd:cd00211     9 NLKAKSKEEAIEELAQLLVAAGYVEEEYIEALLEREKEGSTGIGNGIAIPHAKSEAVKKPGIAVLRLKEPVDFGSLdgQP 88

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1356582553 533 NHVLIACAAADARHELKIFSYLASVL-CQHPAETIAGLTGYEGFMALL 579
Cdd:cd00211    89 VHLIFLLAAPDSNEHLKALSQLARLLsDEEFVEQLLNAQSKEEILALL 136
PTS_EIIA_2 pfam00359
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;
455-558 1.41e-10

Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2;


Pssm-ID: 459780 [Multi-domain]  Cd Length: 139  Bit Score: 59.53  E-value: 1.41e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 455 NVRGESWQHITRKICAQLVTQHHITADEAQRIIAREDEGENLIVNRLAIPHCWSEQERRFRGFFITLAQPIEVN---NEV 531
Cdd:pfam00359  10 NLEAKSKEEAIEFLADKLVEAGYVEPAYLEAILEREKEGSTGIGNGIAIPHARSEAVKKPGIAVLTLKEPVDFGsedGKP 89

                          90       100
                  ....*....|....*....|....*..
gi 1356582553 532 INHVLIACAAADARHELKIFSYLASVL 558
Cdd:pfam00359  90 VKLIFLLAAPDNEASHLKILSQLARLL 116
PtsN COG1762
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate ...
 455-581 1.81e-10

Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 441368 [Multi-domain]  Cd Length: 150  Bit Score: 59.48  E-value: 1.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 455 NVRGESWQHITRKICAQLVTQHHITADEA--QRIIAREDEGENLIVNRLAIPHCWSEQERRFRGFFITLAQPIEVNNEVI 532
Cdd:COG1762    15 DLEASSKEEAIEELAELLAEKGYVLDKEEylEALLEREELGSTGIGPGIAIPHARPEGVKKPGIAVARLKEPVDFGAMDG 94

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1356582553 533 NHV----LIACAAADARHELKIFSYLASVLcQHPA--ETIAGLTGYEGFMALLRQ 581
Cdd:COG1762    95 EPVdlvfLLAAPEDDSEEHLKLLAELARLL-SDEEfrEKLLNAKSPEEILELLKE 148
BglG COG3711
Transcriptional antiterminator [Transcription];
9-432 2.99e-10

Transcriptional antiterminator [Transcription];


Pssm-ID: 442925 [Multi-domain]  Cd Length: 618  Bit Score: 62.95  E-value: 2.99e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553   9 IIDLLEQQPR--TPSELAQQTGVSGRTILRDIDYLNFTLNG-KARISASGSAGYQLEIFE--RRSFFQLLQKHDN----D 79
Cdd:COG3711     1 ILKILLKNNNvvTAKELAKKLNVSERTIRYDIKKINEWLKKnGLEIISKKGIGFRLDIDDeqKEKLLQLLEKSEDplspK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553  80 DR---LLAMLLLNT-FTPRAQLASALNLPETWVAERLPRLKQRYERT-CCLTSRPGLGHFIDETEEKRVILLANLLRK-- 152
Cdd:COG3711    81 ERvayILLRLLLAGdPISLDDLAEELFVSRSTILNDLKKIEKILKKYgLTLERKPNYGIKLEGSELDIRKALAELLSEll 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 153 ----DPFLIPLAGVTRDNFQHLSSACD---NQHRWPLMQGDYLS---SLILAIYALRNQLTDEWPDYPGNEIKQ------ 216
Cdd:COG3711   161 sendLLSLLLLKLIPEEDLELIEEIIEeaeKKLGIKLSDSIYINltdHIAIAIKRIKKGKYIKLDNPLLWEIKKpkeyei 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 217 -------IVEQSGLFLGDNAVRALT----GLIEKQHQQAQVISTDNVQGLLQRVpgiasLNII----------DTQLVEN 275
Cdd:COG3711   241 akeilklIEERLGISLPEDEIGYIAlhllGARLNNDNELSEIITLEITKLIKEI-----INIIeeelgidldeDSLLYER 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 276 ITGHL----LRCLAapvwiGEHRQSSMIN-MKAAWPAAFDMSLYFITLLREQLDIPLFDSDL--IGLYFACALERHQNER 348
Cdd:COG3711   316 LITHLkpaiNRLKY-----GIPIRNPLLEeIKEKYPEAFELAKKIAKYLEKELGIEIPEDEIgyLTLHFGAALERQKESK 390

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553 349 QPIILLSDQNAIATINQLA--IERDVLHCRVIIARSLSELVAIREEiEPLLIINNSHylLDDAvnNYITVKNIITAAGIE 426
Cdd:COG3711   391 KKRVLVVCSSGIGTSRLLKsrLKKLFPEIEIIDVISYRELEEIDLE-DYDLIISTVP--LEDK--PVIVVSPLLTEEDIE 465


                  ....*.
gi 1356582553 427 QIKHFL 432
Cdd:COG3711   466 KIRKFL 471
HTH_11 pfam08279
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
 7-59 3.46e-06

HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.


Pssm-ID: 429896 [Multi-domain]  Cd Length: 52  Bit Score: 44.35  E-value: 3.46e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1356582553   7 LKIIDLLEQQ--PRTPSELAQQTGVSGRTILRDIDYLNFTLngkARISASGSAGY 59
Cdd:pfam08279   1 LQILQLLLEArgPISGQELAEKLGVSRRTIRRDIKILEELG---VPIEAEPGRGY 52
GlpR COG1349
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ...
 1-41 2.59e-05

DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];


Pssm-ID: 440960 [Multi-domain]  Cd Length: 254  Bit Score: 45.90  E-value: 2.59e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1356582553   1 ML-NERQLKIIDLLEQQPR-TPSELAQQTGVSGRTILRDIDYL 41
Cdd:COG1349     1 MLaEERRQKILELLRERGRvSVEELAERLGVSEETIRRDLAEL 43
YobV COG2378
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ...
 4-41 3.72e-05

Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];


Pssm-ID: 441945 [Multi-domain]  Cd Length: 314  Bit Score: 45.84  E-value: 3.72e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1356582553   4 ERQLKIIDLLEQQPR-TPSELAQQTGVSGRTILRDIDYL 41
Cdd:COG2378     5 ERLLALLQLLQSRRGvTAAELAERLEVSERTIYRDIDAL 43
COG1777 COG1777
Predicted transcriptional regulator, ArsR family [Transcription];
3-115 1.24e-03

Predicted transcriptional regulator, ArsR family [Transcription];


Pssm-ID: 441383  Cd Length: 113  Bit Score: 38.86  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356582553   3 NERQLKIIDLLEQQPRTPSELAQQTGVSGRTILRDIDYLNftlngKARISASGSAGYqlEIFERRSFFQLlqkhdNDDRL 82
Cdd:COG1777    16 NPTRRRILALLSEEPAYVSELARELGVSRQAVYKHLRKLE-----EAGLVESYREGR--EDGRARKYYRL-----SAFRL 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1356582553  83 LAMLLLNTFtprAQLASALNLPETWVAERLPRL 115
Cdd:COG1777    84 EVTLTPDLF---ARLARELEAYRRELSGRLARI 113
HTH_AsnC-type pfam13404
AsnC-type helix-turn-helix domain;
7-41 2.28e-03

AsnC-type helix-turn-helix domain;


Pssm-ID: 433180 [Multi-domain]  Cd Length: 41  Bit Score: 35.81  E-value: 2.28e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1356582553   7 LKIIDLLEQQPRTP-SELAQQTGVSGRTILRDIDYL 41
Cdd:pfam13404   5 RKILRLLQEDARISfAELAERVGLSESTVLRRIRRL 40
NiaR COG1827
Transcriptional regulator of NAD metabolism, contains HTH and 3H domains [Transcription, ...
 3-41 6.20e-03

Transcriptional regulator of NAD metabolism, contains HTH and 3H domains [Transcription, Coenzyme transport and metabolism];


Pssm-ID: 441432 [Multi-domain]  Cd Length: 171  Bit Score: 37.80  E-value: 6.20e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1356582553   3 NERQLKIIDLLEQ--QPRTPSELAQQTGVSGRTILRDIDYL 41
Cdd:COG1827     4 EERREKILEILKEskEPISGSELAKKFGVSRQVIVQDIALL 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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