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Conserved domains on  [gi|1348969781|ref|WP_104472018|]
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hypothetical protein [Acinetobacter indicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG4253 super family cl47344
Uncharacterized conserved protein, DUF2345 family [Function unknown];
1-103 3.04e-16

Uncharacterized conserved protein, DUF2345 family [Function unknown];


The actual alignment was detected with superfamily member COG4253:

Pssm-ID: 443395 [Multi-domain]  Cd Length: 900  Bit Score: 73.16  E-value: 3.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1348969781   1 MAGGSQIILNKNGITLITPAKFEAKAGQHIFKSGAEVGVNLKGLPAyEAYNEKFQMLLP-SGEPLRNADYKISNGSDE-L 78
Cdd:COG4253   793 TAGGAYIRIEGGNIELGTPGKITVKAASHSFTGPASASAALPSLPK-GALDEQFVLRHDaTGEPLANQPYRITLADGSvV 871

                          90       100
                  ....*....|....*....|....*
gi 1348969781  79 TAIADNKGRSKRVNSLQEENLKLDL 103
Cdd:COG4253   872 EGVTDAQGKTELLGTPAPESVKIEL 896
 
Name Accession Description Interval E-value
COG4253 COG4253
Uncharacterized conserved protein, DUF2345 family [Function unknown];
1-103 3.04e-16

Uncharacterized conserved protein, DUF2345 family [Function unknown];


Pssm-ID: 443395 [Multi-domain]  Cd Length: 900  Bit Score: 73.16  E-value: 3.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1348969781   1 MAGGSQIILNKNGITLITPAKFEAKAGQHIFKSGAEVGVNLKGLPAyEAYNEKFQMLLP-SGEPLRNADYKISNGSDE-L 78
Cdd:COG4253   793 TAGGAYIRIEGGNIELGTPGKITVKAASHSFTGPASASAALPSLPK-GALDEQFVLRHDaTGEPLANQPYRITLADGSvV 871

                          90       100
                  ....*....|....*....|....*
gi 1348969781  79 TAIADNKGRSKRVNSLQEENLKLDL 103
Cdd:COG4253   872 EGVTDAQGKTELLGTPAPESVKIEL 896
DUF2345 pfam10106
Uncharacterized protein conserved in bacteria (DUF2345); Members of this family are found in ...
 1-35 1.68e-05

Uncharacterized protein conserved in bacteria (DUF2345); Members of this family are found in various bacterial hypothetical proteins, as well as Rhs element Vgr proteins.


Pssm-ID: 431059 [Multi-domain]  Cd Length: 151  Bit Score: 41.35  E-value: 1.68e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1348969781   1 MAGGSQIILNKNGITLITPAKFEAKAGQHIFKSGA 35
Cdd:pfam10106 117 AAGGSYIRLEGGGIELGTPGKITVKAASHQFPGPA 151
 
Name Accession Description Interval E-value
COG4253 COG4253
Uncharacterized conserved protein, DUF2345 family [Function unknown];
1-103 3.04e-16

Uncharacterized conserved protein, DUF2345 family [Function unknown];


Pssm-ID: 443395 [Multi-domain]  Cd Length: 900  Bit Score: 73.16  E-value: 3.04e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1348969781   1 MAGGSQIILNKNGITLITPAKFEAKAGQHIFKSGAEVGVNLKGLPAyEAYNEKFQMLLP-SGEPLRNADYKISNGSDE-L 78
Cdd:COG4253   793 TAGGAYIRIEGGNIELGTPGKITVKAASHSFTGPASASAALPSLPK-GALDEQFVLRHDaTGEPLANQPYRITLADGSvV 871

                          90       100
                  ....*....|....*....|....*
gi 1348969781  79 TAIADNKGRSKRVNSLQEENLKLDL 103
Cdd:COG4253   872 EGVTDAQGKTELLGTPAPESVKIEL 896
DUF2345 pfam10106
Uncharacterized protein conserved in bacteria (DUF2345); Members of this family are found in ...
 1-35 1.68e-05

Uncharacterized protein conserved in bacteria (DUF2345); Members of this family are found in various bacterial hypothetical proteins, as well as Rhs element Vgr proteins.


Pssm-ID: 431059 [Multi-domain]  Cd Length: 151  Bit Score: 41.35  E-value: 1.68e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1348969781   1 MAGGSQIILNKNGITLITPAKFEAKAGQHIFKSGA 35
Cdd:pfam10106 117 AAGGSYIRLEGGGIELGTPGKITVKAASHQFPGPA 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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