|
Name |
Accession |
Description |
Interval |
E-value |
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
4-329 |
4.07e-149 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 428.91 E-value: 4.07e-149
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 4 NLYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINN 83
Cdd:TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 84 NSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPD 163
Cdd:TIGR02397 83 GSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 164 TIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLF 243
Cdd:TIGR02397 163 TILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGKITYEDVNELLGLV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 244 DENFIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEYIFDSLI------------------------NEKRSN 299
Cdd:TIGR02397 243 DDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLikktpsnllavleseqeflkelalKLSLEF 322
|
330 340 350
....*....|....*....|....*....|
gi 1341788698 300 LIHLMGIFNNILKDLKYSENKRLIFDVEIL 329
Cdd:TIGR02397 323 LLRLLDILLEALKDLRFSNDPRIWLEMTLL 352
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
5-427 |
1.09e-148 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 432.27 E-value: 1.09e-148
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNN 84
Cdd:PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 SFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDT 164
Cdd:PRK14962 84 TFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 165 IISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLFD 244
Cdd:PRK14962 164 IISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIP 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 245 ENFIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEYIFDSLINEKRSNLIHLMGIFNNILKDLKYSENKRLIF 324
Cdd:PRK14962 244 IEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRLVC 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 325 DVEILDFMHKYSTTSVPLLHENEKTPNRNQVTTESVIKETQ-----------HPIMKKILDYFsdphEKKSNMAIYFALL 393
Cdd:PRK14962 324 KLGSASIATRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKakeekqediefEKRFKELMEEL----KEKGDLSIFVALS 399
|
410 420 430
....*....|....*....|....*....|....
gi 1341788698 394 FSNPEIENNKIHFKFSSGQKLEYEILKKYVDELK 427
Cdd:PRK14962 400 LSEVEEDGDKVKISFDSSKAMHYELMKEKLPELE 433
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
5-445 |
1.76e-145 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 426.98 E-value: 1.76e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNN 84
Cdd:PRK05563 6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 SFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDT 164
Cdd:PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 165 IISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLFD 244
Cdd:PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEVTGSVS 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 245 ENFIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEYIFDSLINE-------------------------KRSN 299
Cdd:PRK05563 246 QEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKtspeleildestendelfkelseklDIER 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 300 LIHLMGIFNNILKDLKYSENKRLIFDVEILDFMHK------YSTTSVPLLHE-----------------------NEKTP 350
Cdd:PRK05563 326 LYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQaaaspeYDTELEVLLQRveqleqelkqlkaqpvgvapeqkEKKKE 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 351 NRNQVTTESVIKETQ-HPIMK---------------KILDYFsdpheKKSNMAIYFALLFSNP-EIENNKIHFKFSSGQK 413
Cdd:PRK05563 406 KKKNKKKKYKVPRGKiYKVLKeatrqdlellknvwgEILESL-----KAQRKSLRALLVNSEPvAASEDTVVLAFEYEIH 480
|
490 500 510
....*....|....*....|....*....|...
gi 1341788698 414 LEYEIL-KKYVDELKVNIFLLIDGSYEITFSLE 445
Cdd:PRK05563 481 FEKAMLdKELNDTIENILSKLLGKSVEIVAVPE 513
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
11-333 |
2.42e-140 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 406.11 E-value: 2.42e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 11 PLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNNSFLDVI 90
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGPTGEPCGECESCRAIAAGSHPDVI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 91 EMDA-ASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRS 169
Cdd:COG2812 86 EIDAeASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEPQKLLPTILSRC 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 170 QIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGemkithqdTLDIlglfdENFIV 249
Cdd:COG2812 166 QRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQAIAFG--------LLDR-----RELLL 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 250 QFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEYIFD-----------SLINEKR-------------SNLIHLMG 305
Cdd:COG2812 233 DLLEALLAGDVAALLALAEELAKRGRDLKRFLDDLLSLLRDllllklgpdaeLLVNEDErerlqelarrlspERLLRAIQ 312
|
330 340
....*....|....*....|....*...
gi 1341788698 306 IFNNILKDLKYSENKRLIFDVEILDFMH 333
Cdd:COG2812 313 ILLEARRELERNVNPRLALEMLLLRLAR 340
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
7-422 |
2.71e-124 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 370.69 E-value: 2.71e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 7 RKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNNSF 86
Cdd:PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 87 LDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTII 166
Cdd:PRK14953 88 PDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTIL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 167 SRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLFDEN 246
Cdd:PRK14953 168 SRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQE 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 247 FIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEYIFDSLINEKRSN--------------------LIHLMGI 306
Cdd:PRK14953 248 SVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNpeevfqvedfyrklekpleaLLYLEDV 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 307 FNNILKDLKYSENKRlIFDVEILDFMHKYSTTSV-PLLHENEKTPNRNQVTTESVIKETQhpimkkILDYFSDPHEKKSN 385
Cdd:PRK14953 328 INKAFSEARTRDPLR-AYELAILKLLYVKDIVPIsELLKEGSKQETKEQPEKKEEEKEEL------DIDKIILQIIKNEG 400
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1341788698 386 MAIYFALLFSNPEIENNKIHFKFSSGQ----KLEYEILKKY 422
Cdd:PRK14953 401 KIISAILKNAEIKEEEGKITIKVEKSEedtlDLEIKSIKKY 441
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
7-332 |
2.01e-103 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 315.94 E-value: 2.01e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 7 RKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDP-QVYNPCNKCENCVSINNNS 85
Cdd:PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPtEDQEPCNQCASCKEISSGT 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 86 FLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTI 165
Cdd:PRK06305 89 SLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTI 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 166 ISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLFDE 245
Cdd:PRK06305 169 LSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKALGLLSQ 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 246 NFIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEYIFDSLINEKRSNLIHLMgifnnilkdLKYSENKRLifd 325
Cdd:PRK06305 249 DSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLSSVA---------TKYSSEQLL--- 316
|
....*..
gi 1341788698 326 vEILDFM 332
Cdd:PRK06305 317 -EIIDFL 322
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
5-264 |
2.48e-99 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 309.43 E-value: 2.48e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQ-VYNPCNKCENCVSINN 83
Cdd:PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDpKGRPCGTCEMCRAIAE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 84 NSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPD 163
Cdd:PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 164 TIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLF 243
Cdd:PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSLLGIS 245
|
250 260
....*....|....*....|.
gi 1341788698 244 DENFIVQFIENVSNSKIDEFL 264
Cdd:PRK14950 246 GDEEVKALAEALLAKDLKAAL 266
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
5-253 |
2.74e-99 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 307.83 E-value: 2.74e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNN 84
Cdd:PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 SFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDT 164
Cdd:PRK14969 86 RFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 165 IISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLFD 244
Cdd:PRK14969 166 VLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAMLGAID 245
|
....*....
gi 1341788698 245 ENFIVQFIE 253
Cdd:PRK14969 246 QDYLFALLE 254
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
5-316 |
5.62e-97 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 301.95 E-value: 5.62e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNN 84
Cdd:PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALEN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 SFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDT 164
Cdd:PRK08451 84 RHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPAT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 165 IISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLFD 244
Cdd:PRK08451 164 ILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGLLD 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1341788698 245 ENFIVQFIENVSNS---KIDEFLVQSEDLfnlgkDPEILLEQSIEYIFDSLINEKRSNLIHLMGIFNNILKDLKY 316
Cdd:PRK08451 244 PSKLEDFFQAILNQdkeKLFELLKELEDY-----EAEMVLDEMMLFLKEKFLSKDSEFSILLYERFFRILSSAKS 313
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
5-281 |
3.00e-96 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 302.65 E-value: 3.00e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQV--YNPCNKCENCVSIN 82
Cdd:PRK14948 6 LHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKptPEPCGKCELCRAIA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 83 NNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVP 162
Cdd:PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 163 DTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEmKITHQDTLDILGL 242
Cdd:PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPG-PITPEAVWDLLGA 244
|
250 260 270
....*....|....*....|....*....|....*....
gi 1341788698 243 FDENFIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILL 281
Cdd:PRK14948 245 VPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAIL 283
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
7-276 |
3.30e-95 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 299.77 E-value: 3.30e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 7 RKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQV-YNPCNKCENCVSINNNS 85
Cdd:PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTAdGEACNECESCVAFNEQR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 86 FLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTI 165
Cdd:PRK14971 89 SYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTI 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 166 ISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLFDE 245
Cdd:PRK14971 169 LSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDY 248
|
250 260 270
....*....|....*....|....*....|.
gi 1341788698 246 NFIVQFIENVSNSKIDEFLVQSEDLFNLGKD 276
Cdd:PRK14971 249 DYYFRLTDALLAGKVSDSLLLFDEILNKGFD 279
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
5-249 |
6.05e-95 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 297.81 E-value: 6.05e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNC---MDPQvynPCNKCENCVSI 81
Cdd:PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCeqgLTAE---PCNVCPPCVEI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 82 NNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKV 161
Cdd:PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 162 PDTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILG 241
Cdd:PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLG 242
|
....*...
gi 1341788698 242 LFDENFIV 249
Cdd:PRK14965 243 VVDRRLLL 250
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
5-362 |
3.77e-94 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 299.81 E-value: 3.77e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCM-DPQVYNPCNKCENcvSINN 83
Cdd:PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCShKTDLLEPCQECIE--NVNN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 84 NsfLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPD 163
Cdd:PRK07133 86 S--LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 164 TIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLF 243
Cdd:PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEELFGLV 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 244 DENFIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEYIFDSLINEKRSNLIHLMGIFNNILKDLKYSenkrli 323
Cdd:PRK07133 244 SNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLEKLKID------ 317
|
330 340 350
....*....|....*....|....*....|....*....
gi 1341788698 324 fdveiLDFMHKYSTTSVPLLHENEKTPNRNQVTTESVIK 362
Cdd:PRK07133 318 -----DDFAYKFIEILFDLLKDLKISDNPNDTLEILIIK 351
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
5-281 |
5.01e-92 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 291.03 E-value: 5.01e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQV-----YNPCNKCENCV 79
Cdd:PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGdggptIDLCGVGEHCQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 80 SINNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLE 159
Cdd:PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 160 KVPDTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDI 239
Cdd:PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAVRDM 253
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1341788698 240 LGLFDENFIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILL 281
Cdd:PRK09111 254 LGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVL 295
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
5-253 |
1.48e-91 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 292.55 E-value: 1.48e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYN-----PCNKCENCV 79
Cdd:PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGgitaqPCGQCRACT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 80 SINNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLE 159
Cdd:PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 160 KVPDTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDI 239
Cdd:PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVRGM 245
|
250
....*....|....
gi 1341788698 240 LGLFDENFIVQFIE 253
Cdd:PRK12323 246 LGAIDQSYLVRLLD 259
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
5-270 |
2.93e-90 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 289.30 E-value: 2.93e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNN 84
Cdd:PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 SFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDT 164
Cdd:PRK08691 86 RYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 165 IISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLFD 244
Cdd:PRK08691 166 VLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVD 245
|
250 260
....*....|....*....|....*.
gi 1341788698 245 ENFIVQFIENVSNSKIDEFLVQSEDL 270
Cdd:PRK08691 246 KQYLYELLTGIINQDGAALLAKAQEM 271
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
5-253 |
5.69e-90 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 286.23 E-value: 5.69e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQ-----VYNPCNKCENCV 79
Cdd:PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDgqggiTATPCGVCQACR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 80 SINNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLE 159
Cdd:PRK14951 86 DIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 160 KVPDTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDI 239
Cdd:PRK14951 166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAVRQM 245
|
250
....*....|....
gi 1341788698 240 LGLFDENFIVQFIE 253
Cdd:PRK14951 246 LGSVDRSHVFRLID 259
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
5-244 |
1.40e-89 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 285.99 E-value: 1.40e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNN 84
Cdd:PRK07994 6 LARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 SFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDT 164
Cdd:PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 165 IISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLFD 244
Cdd:PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAMLGTLD 245
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
5-242 |
2.61e-87 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 275.95 E-value: 2.61e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCM--DPQvynPCNKCENCVSIN 82
Cdd:PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSgeDPK---PCGECESCLAVR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 83 NNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVP 162
Cdd:PRK14963 81 RGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 163 DTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGeMKITHQDTLDILGL 242
Cdd:PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALG-TPVTRKQVEEALGL 239
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
1-325 |
2.70e-86 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 276.34 E-value: 2.70e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 1 MNNNLYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVS 80
Cdd:PRK05896 2 SEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 81 INNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEK 160
Cdd:PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 161 VPDTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDIL 240
Cdd:PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTF 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 241 GLFDENFIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEYIFDSLINEKRSNLIHLMGIFNNILKDLKYSENK 320
Cdd:PRK05896 242 GLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTKNINLLKKLSKEQLKTLNLEKQK 321
|
....*
gi 1341788698 321 RLIFD 325
Cdd:PRK05896 322 LLSIE 326
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
4-282 |
2.39e-85 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 270.50 E-value: 2.39e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 4 NLYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINN 83
Cdd:PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 84 NSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPD 163
Cdd:PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 164 TIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLF 243
Cdd:PRK14964 162 TIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCV 241
|
250 260 270
....*....|....*....|....*....|....*....
gi 1341788698 244 DENFIVQFIENVSNSKIDEFLVQSEDLFNLGkDPEILLE 282
Cdd:PRK14964 242 DKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILE 279
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
8-287 |
8.84e-85 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 271.26 E-value: 8.84e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 8 KYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNNSFL 87
Cdd:PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 88 DVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIIS 167
Cdd:PRK06647 89 DVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 168 RSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLFDENF 247
Cdd:PRK06647 169 RCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKMGLTGDEF 248
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1341788698 248 IVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEY 287
Cdd:PRK06647 249 LEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEF 288
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
7-301 |
1.31e-84 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 272.20 E-value: 1.31e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 7 RKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCM----DPQ----VYNPCNKCENC 78
Cdd:PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQrmidDPVylqeVTEPCGECESC 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 79 VSINNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNL 158
Cdd:PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 159 EKVPDTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKF-----GEMKITH 233
Cdd:PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFsvgseAEKVIAY 247
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 234 QDTLDILGLFDENFIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEYI--FDSLINEKRSNLI 301
Cdd:PRK14954 248 QGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFrnFLVLYNLRSTRLI 317
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
7-301 |
6.59e-83 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 261.37 E-value: 6.59e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 7 RKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCM----DP----QVYNPCNKCENC 78
Cdd:PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQrmidDAdylqEVTEPCGECESC 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 79 VSINNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNL 158
Cdd:PRK14955 88 RDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 159 EKVPDTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKF-----GEMKITH 233
Cdd:PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFsveseGEGSIRY 247
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 234 QDTLDILGLFDENFIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEYIFDSLI--NEKRSNLI 301
Cdd:PRK14955 248 DKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVvhNLRSTRLV 317
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
5-257 |
3.17e-82 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 258.20 E-value: 3.17e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNN 84
Cdd:PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 SFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDT 164
Cdd:PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 165 IISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLFD 244
Cdd:PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDMLGLLN 245
|
250
....*....|...
gi 1341788698 245 ENFIVQFIENVSN 257
Cdd:PRK14961 246 EKQSFLLTDALLK 258
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
5-302 |
3.24e-81 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 259.49 E-value: 3.24e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNN 84
Cdd:PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 SFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDT 164
Cdd:PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 165 IISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGL-- 242
Cdd:PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYhg 247
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1341788698 243 --FDENFIVQFIENVSNSKIDEFLvqsEDLFNLGKDPEILLEQSIEY------IFDSLINEKRSNLIH 302
Cdd:PRK14956 248 ieFLTSFIKSLIDPDNHSKSLEIL---ESLYQEGQDIYKFLWDSIEFthtlnlIRDSLADRESVNFPK 312
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
2-253 |
1.31e-80 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 261.92 E-value: 1.31e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 2 NNNLYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSI 81
Cdd:PRK14959 3 HASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 82 NNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKV 161
Cdd:PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKF 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 162 PDTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILG 241
Cdd:PRK14959 163 PVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLG 242
|
250
....*....|..
gi 1341788698 242 LFDENFIVQFIE 253
Cdd:PRK14959 243 LAGQELFLRLME 254
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
5-282 |
5.46e-80 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 266.59 E-value: 5.46e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNN 84
Cdd:PRK14949 6 LARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 SFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDT 164
Cdd:PRK14949 86 RFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 165 IISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKF--GEMKITHQDTLdiLGL 242
Cdd:PRK14949 166 VLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFggGQVMLTQVQTM--LGS 243
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1341788698 243 FDENFIVQFIENVSNSKIdEFLVQS-EDLFNLGKDPE----ILLE 282
Cdd:PRK14949 244 IDEQHVIALLKALTDADI-GVLMQTcAQVLAFGADAQevlrSLLE 287
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
1-266 |
2.39e-79 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 260.37 E-value: 2.39e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 1 MNNNLYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVS 80
Cdd:PRK14960 1 MYQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 81 INNNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEK 160
Cdd:PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 161 VPDTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDIL 240
Cdd:PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEML 240
|
250 260
....*....|....*....|....*....
gi 1341788698 241 GLFDENFIVQFIENV---SNSKIDEFLVQ 266
Cdd:PRK14960 241 GLIDRTIIYDLILAVhqnQREKVSQLLLQ 269
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
5-311 |
5.50e-79 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 255.39 E-value: 5.50e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNN 84
Cdd:PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 SFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDT 164
Cdd:PRK14957 86 SFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 165 IISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLFD 244
Cdd:PRK14957 166 ILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQMLGIID 245
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1341788698 245 ENFIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEYIFDSLINEKRSNLIHL----MGIFNNIL 311
Cdd:PRK14957 246 SEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVndidVDIINNIL 316
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
5-253 |
3.23e-78 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 260.17 E-value: 3.23e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNN 84
Cdd:PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 SFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDT 164
Cdd:PRK07003 86 RFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 165 IISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLFD 244
Cdd:PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALD 245
|
....*....
gi 1341788698 245 ENFIVQFIE 253
Cdd:PRK07003 246 QTYMVRLLD 254
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
7-363 |
4.61e-78 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 252.09 E-value: 4.61e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 7 RKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYN----PCNKCENCVSIN 82
Cdd:PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENttikTCEQCTNCISFN 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 83 NNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVP 162
Cdd:PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 163 DTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQV----EKFGEMkITHQDTLD 238
Cdd:PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAasmsAKSDNI-ISPQVINQ 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 239 ILGLFDENFIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEYI-------------------FDSLINE---- 295
Cdd:PRK06645 252 MLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIaylnkvkmlpnyslpiyesFNDRTKSildk 331
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 296 -KRSNLIHLMGIFNNILKDLKYSENKRLIFDVEILDFMHkysTTSVPLLHE-NEKTPNRNQVTTESVIKE 363
Cdd:PRK06645 332 iSLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIY---STSLPLLTDfDGNNQNLNQSINPEIKKK 398
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
7-276 |
3.63e-76 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 242.86 E-value: 3.63e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 7 RKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCmdPQVYNPcnkcencvsiNNNSF 86
Cdd:PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ--PGYDDP----------NEDFS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 87 LDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTII 166
Cdd:PRK14970 77 FNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 167 SRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILGLFDEN 246
Cdd:PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYD 236
|
250 260 270
....*....|....*....|....*....|
gi 1341788698 247 FIVQFIENVSNSKIDEFLVQSEDLFNLGKD 276
Cdd:PRK14970 237 TYINVTDLILENKIPELLLAFNEILRKGFD 266
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
5-290 |
2.81e-72 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 239.01 E-value: 2.81e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSI--N 82
Cdd:PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALapN 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 83 NNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVP 162
Cdd:PRK14952 83 GPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 163 DTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYElDALQIIAKRAKGG-MRDAISMLEQ--VEKFGEmKITHQDTLDI 239
Cdd:PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD-DAVYPLVIRAGGGsPRDTLSVLDQllAGAADT-HVTYQRALGL 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1341788698 240 LGLFDENFIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEYIFD 290
Cdd:PRK14952 241 LGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRD 291
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
5-222 |
1.10e-71 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 242.20 E-value: 1.10e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSI--N 82
Cdd:PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALapG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 83 NNSFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVP 162
Cdd:PRK07764 85 GPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1341788698 163 DTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYElDALQIIAKRAKGG-MRDAISMLEQ 222
Cdd:PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE-PGVLPLVIRAGGGsVRDSLSVLDQ 224
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
5-413 |
3.32e-71 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 234.24 E-value: 3.32e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNN 84
Cdd:PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 SFLDVIEMDAASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDT 164
Cdd:PRK14958 86 RFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 165 IISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKI------THQDTLD 238
Cdd:PRK14958 166 VLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVliadvkTMLGTIE 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 239 ILGLFDenfIVQFIENVSNSK----IDEFLVQSEDLFNLGKD--------------PEILLEQSIEYI--FDSLINEKRS 298
Cdd:PRK14958 246 PLLLFD---ILEALAAKAGDRllgcVTRLVEQGVDFSNALADllsllhqiaiiqtvPEALIENDSEQLrqLAKLLDREDV 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 299 NLIHLMGIFNNilKDLKYSENKRLIFDVEILDFMHKY--STTSVPLLHENEKTpnrnqVTTESVIKETQHPIMKKILdyf 376
Cdd:PRK14958 323 QLFYQIGLIGQ--RDLAYSPTPQTGFEMTLLRMLAFYpsAANAIPETESKEAV-----VTPTPKSSETSWPQLLSQL--- 392
|
410 420 430
....*....|....*....|....*....|....*..
gi 1341788698 377 sdpheKKSNMAIYFALLFSNPEIENNKIHFKFSSGQK 413
Cdd:PRK14958 393 -----KLTGATLALAQQCSLKELTDNRLYLMLNPKQK 424
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
20-229 |
7.76e-56 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 187.10 E-value: 7.76e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 20 QPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCEnCVSINNNSFLDVIEM---DAAS 96
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGKACGQCH-SRLMAAGNHPDLLELnpeEKSD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 97 NRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRSQIINFKN 176
Cdd:COG0470 80 QIGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1341788698 177 LGQNEIVEGLKniasSEGmeYELDALQIIAKRAKGGMRDAISMLEQVEKFGEM 229
Cdd:COG0470 160 PSEEEALAWLR----EEG--VDEDALEAILRLAGGDPRAAINLLQALAGRKEL 206
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
25-203 |
5.47e-55 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 181.67 E-value: 5.47e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 25 KYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNNSFLDVIEMDAASNR-GIDEI 103
Cdd:TIGR00678 2 QQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGGGEPCGECHSCRLIEAGNHPDLHRLEPEGQSiKVDQV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 104 RNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRSQIINFKNLGQNEIV 183
Cdd:TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEALL 161
|
170 180
....*....|....*....|
gi 1341788698 184 EGLKNIASSEGMEYELDALQ 203
Cdd:TIGR00678 162 QWLIRQGISEEAAELLLALA 181
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
19-177 |
1.53e-53 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 177.02 E-value: 1.53e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 19 GQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNNSFLDV--IEMDAAS 96
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDLPCGQCRSCRRIESGNHPDLviIEPEGQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 97 NRgIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRSQIINFKN 176
Cdd:pfam13177 81 IK-IDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKP 159
|
.
gi 1341788698 177 L 177
Cdd:pfam13177 160 L 160
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
20-186 |
1.04e-40 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 148.54 E-value: 1.04e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 20 QPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNNSFLDV--IEMDAASN 97
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVhlVAPDGQSI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 98 RgIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRSQIINFKNL 177
Cdd:PRK08058 91 K-KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPL 169
|
....*....
gi 1341788698 178 GQNEIVEGL 186
Cdd:PRK08058 170 PPESLIQRL 178
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
8-220 |
3.25e-31 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 122.29 E-value: 3.25e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 8 KYRPLDFDEILGQPHVVKYFKNALNKQEVSHaYIFSGPRGTGKTTTARILAKVLNCMDPQvynpcnkcENcvsinnnsFL 87
Cdd:PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALARELYGEDWR--------EN--------FL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 88 dviEMDAASNRGIDEIRN-IRDSSNYRPVYG-KYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTI 165
Cdd:PRK00440 73 ---ELNASDERGIDVIRNkIKEFARTAPVGGaPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPI 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1341788698 166 ISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISML 220
Cdd:PRK00440 150 QSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL 204
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
12-242 |
7.79e-31 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 121.16 E-value: 7.79e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 12 LDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMdpqvyNPCNKCENCVSINNN--SFLDV 89
Cdd:PRK07399 1 NLFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQ-----GSPSKNIRRRLEEGNhpDLLWV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 90 ----------IEMDAASNRG----------IDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEpPSHV 149
Cdd:PRK07399 76 eptyqhqgklITASEAEEAGlkrkappqirLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGNG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 150 VFILATTNLEKVPDTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQV--EKFG 227
Cdd:PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIANIEQLQSIppELLQ 234
|
250
....*....|....*
gi 1341788698 228 EMKITHQDTLDILGL 242
Cdd:PRK07399 235 KLEQPPKSPLEALEL 249
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
8-241 |
1.20e-28 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 115.47 E-value: 1.20e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 8 KYRPLDFDEILGQPHVVKYFKNALNKQEVSHaYIFSGPRGTGKTTTARILAKVLncmdpqvYNPCNKcENCVSINNNSFL 87
Cdd:PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALAREL-------YGDPWE-NNFTEFNVADFF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 88 D--------------------VIEMDAASNrgIDEIrnIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPS 147
Cdd:PRK12402 79 DqgkkylvedprfahflgtdkRIRSSKIDN--FKHV--LKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 148 HVVFILATTNLEKVPDTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLeQVEKFG 227
Cdd:PRK12402 155 TCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTL-QTAALA 233
|
250
....*....|....
gi 1341788698 228 EMKITHQDTLDILG 241
Cdd:PRK12402 234 AGEITMEAAYEALG 247
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
8-221 |
1.69e-23 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 102.69 E-value: 1.69e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 8 KYRPLDFDEILGQPHVVKYFKNALN---KQEVSHAYIFSGPRGTGKTTTARILAKVLNcmdpqvynpcnkcencvsinnn 84
Cdd:PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIEswlKGKPKKALLLYGPPGVGKTSLAHALANDYG---------------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 sfLDVIEMDAASNRGIDEIRNI-RDSSNYRPVYG-KYKVYIIDEFHMLT----REAFNALLKTLEEPPSHVVFIlATTNL 158
Cdd:PRK04195 65 --WEVIELNASDQRTADVIERVaGEAATSGSLFGaRRKLILLDEVDGIHgnedRGGARAILELIKKAKQPIILT-ANDPY 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1341788698 159 EKVPDTIISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLE 221
Cdd:PRK04195 142 DPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQ 204
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
14-173 |
2.27e-23 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 101.53 E-value: 2.27e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 14 FDEILGQPHVVKYFKNA---------LNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVyNPCNKCENCVSINNN 84
Cdd:PRK07940 4 WDDLVGQEAVVAELRAAaraaradvaAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDE-PGCGECRACRTVLAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 SFLDV--IEMDAASnRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVP 162
Cdd:PRK07940 83 THPDVrvVAPEGLS-IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVL 161
|
170
....*....|.
gi 1341788698 163 DTIISRSQIIN 173
Cdd:PRK07940 162 PTIRSRCRHVA 172
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
8-241 |
3.47e-23 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 101.31 E-value: 3.47e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 8 KYRPLDFDEILGQPHVV---KYFKNALNKQEVSHAyIFSGPRGTGKTTTARILAKVLNcmdpqvynpcnkcencvsinnn 84
Cdd:PRK13342 5 RMRPKTLDEVVGQEHLLgpgKPLRRMIEAGRLSSM-ILWGPPGTGKTTLARIIAGATD---------------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 sfLDVIEMDAASNrGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHmltReaFN-----ALLKTLEEppSHVVFILATTnlE 159
Cdd:PRK13342 62 --APFEALSAVTS-GVKDLREVIEEARQRRSAGRRTILFIDEIH---R--FNkaqqdALLPHVED--GTITLIGATT--E 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 160 ----KVPDTIISRSQIINFKNLGQNEIVEGLKN-IASSEGMEYEL--DALQIIAKRAKGGMRDAISMLEQVEKFGEmKIT 232
Cdd:PRK13342 130 npsfEVNPALLSRAQVFELKPLSEEDIEQLLKRaLEDKERGLVELddEALDALARLANGDARRALNLLELAALGVD-SIT 208
|
....*....
gi 1341788698 233 HQDTLDILG 241
Cdd:PRK13342 209 LELLEEALQ 217
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
12-293 |
5.84e-22 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 95.87 E-value: 5.84e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 12 LDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILA-KVLNcmdpqvynpcnkcencvSINNNSFLDVI 90
Cdd:PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIAlKILG-----------------KSQQREYVDII 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 91 EMDAASNR--GIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISR 168
Cdd:PRK05564 64 EFKPINKKsiGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 169 SQIINFKNLGQNEI---VEGLKNIASSEGMEYELDALQIIAKRAKGGMRDaismleqvEKFGEMKithqdtldilglfde 245
Cdd:PRK05564 144 CQIYKLNRLSKEEIekfISYKYNDIKEEEKKSAIAFSDGIPGKVEKFIED--------DSLKNIR--------------- 200
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1341788698 246 NFIVQFIENVSNSKIDEFLVQSEDLFNLGKDPEILLEQSIEYIFDSLI 293
Cdd:PRK05564 201 NMSLEILKDIKKSNINILLKYENFLIKYKENWEEILTCILSYIRDSLL 248
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
8-277 |
2.84e-20 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 91.33 E-value: 2.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 8 KYRPLDFDEILGQPHVVKYFKnALNKQEVSHAYIFSGPRGTGKTTTARILAKVLncmdpqvynpcnkcencvsINNNSFL 87
Cdd:PLN03025 6 KYRPTKLDDIVGNEDAVSRLQ-VIARDGNMPNLILSGPPGTGKTTSILALAHEL-------------------LGPNYKE 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 88 DVIEMDAASNRGIDEIRNIRDSSNYRPVY---GKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDT 164
Cdd:PLN03025 66 AVLELNASDDRGIDVVRNKIKMFAQKKVTlppGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEP 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 165 IISRSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLeQVEKFGEMKITHQDTLDILGLFD 244
Cdd:PLN03025 146 IQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNL-QATHSGFGFVNQENVFKVCDQPH 224
|
250 260 270
....*....|....*....|....*....|...
gi 1341788698 245 ENFIVQFIENVSNSKIDEFLVQSEDLFNLGKDP 277
Cdd:PLN03025 225 PLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSP 257
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
20-176 |
3.06e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 90.46 E-value: 3.06e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 20 QPHVVKYFKNALNKQEVSHAYIFSGprGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNNSFLDV--IEmdaASN 97
Cdd:PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVtvIE---PQG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 98 RGI--DEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRSQIINF- 174
Cdd:PRK07276 82 QVIktDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFp 161
|
..
gi 1341788698 175 KN 176
Cdd:PRK07276 162 KN 163
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
38-202 |
3.27e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 91.30 E-value: 3.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 38 HAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNNSFLD--VIEMDAAS-NRGIDEIRNIRDSSNYRP 114
Cdd:PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDnfVLEPEEADkTIKVDQVRELVSFVVQTA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 115 VYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRSQIINFKNLGQNEIVEGLKNiASSEG 194
Cdd:PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQ-ALPES 181
|
....*...
gi 1341788698 195 MEYELDAL 202
Cdd:PRK05707 182 DERERIEL 189
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
179-241 |
8.56e-19 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 80.24 E-value: 8.56e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1341788698 179 QNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLDILG 241
Cdd:cd18137 3 VEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
39-168 |
1.44e-18 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 86.46 E-value: 1.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 39 AYIFSGPRGTGKTTTARILAKVLNCMDPQVYN-PCNKCENCVSINNNSFLDVIEMDAASNR----------GIDEIRNIR 107
Cdd:PRK08699 23 AWLFAGKKGIGKTAFARFAAQALLCETPAPGHkPCGECMSCHLFGQGSHPDFYEITPLSDEpengrkllqiKIDAVREII 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1341788698 108 DSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISR 168
Cdd:PRK08699 103 DNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR 163
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
38-253 |
2.30e-18 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 85.94 E-value: 2.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 38 HAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNNSFLDVIEMDAASNR--GIDEIRNIRDSSNYRPV 115
Cdd:PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKdiGVDQVREINEKVSQHAQ 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 116 YGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRSQIINFKNLGQNEIVEGLKNIASSEGM 195
Cdd:PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAEIS 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1341788698 196 EYELdALQIIAKRAkggmRDAISMLEQ--VEKFGEMKIT------HQDTLDILGLFDENFIVQFIE 253
Cdd:PRK06871 185 EILT-ALRINYGRP----LLALTFLEQglLEQRKTFLRQfwlfyrRRSPLELLPLFDKELVLQQLD 245
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
38-297 |
1.63e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 83.55 E-value: 1.63e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 38 HAYIFSGPRGTGKTTTARILA-KVLNCMDPQvynpcNKCENCVSINNNSFL-------------------DVIEMDAASN 97
Cdd:PRK09112 46 HALLFEGPEGIGKATLAFHLAnHILSHPDPA-----EAPETLADPDPASPVwrqiaqgahpnllhitrpfDEKTGKFKTA 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 98 RGIDEIRNI-----RDSSNyrpvyGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRSQII 172
Cdd:PRK09112 121 ITVDEIRRVghflsQTSGD-----GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPI 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 173 NFKNLGQNEIVEGLKNIASSEGMEYEldALQIIAKRAKGGMRDAIsmleqvekfgemKITHQDTLDILGLFDENFIVQfi 252
Cdd:PRK09112 196 SLKPLDDDELKKALSHLGSSQGSDGE--ITEALLQRSKGSVRKAL------------LLLNYGGLEIIATIDQLLAGS-- 259
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1341788698 253 enVSNSKIDEFLVQSedlFNlGKDPEILLEQSIEYIFDSLINEKR 297
Cdd:PRK09112 260 --GPDARKAHKLADA---LS-GRESEVQFDFFRDHLLDRIMAEAR 298
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
10-244 |
2.00e-17 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 84.34 E-value: 2.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 10 RPLDFDEILGQPHVV---KYFKNALNKQEVsHAYIFSGPRGTGKTTTARILAKVLNCmdpqvynpcnkceNCVSINnnsf 86
Cdd:COG2256 20 RPRTLDEVVGQEHLLgpgKPLRRAIEAGRL-SSMILWGPPGTGKTTLARLIANATDA-------------EFVALS---- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 87 ldviemdaASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHmltReaFN-----ALLKTLEEppSHVVFILATTnlE-- 159
Cdd:COG2256 82 --------AVTSGVKDIREVIEEARERRAYGRRTILFVDEIH---R--FNkaqqdALLPHVED--GTITLIGATT--Enp 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 160 --KVPDTIISRSQIINFKNLGQNEIVEGLKN-IASSE------GMEYELDALQIIAKRAKGGMRDAISMLEQV----EKF 226
Cdd:COG2256 145 sfEVNSALLSRCRVFVLKPLSEEDLEQLLERaLADDErglggyKLELDDEALEALARLADGDARRALNALELAvlsaPPD 224
|
250 260
....*....|....*....|..
gi 1341788698 227 GEMKITHQDTLDILG----LFD 244
Cdd:COG2256 225 GVIEITLELVEEALQrralRYD 246
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
5-328 |
1.96e-15 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 76.95 E-value: 1.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 5 LYRKYRPLDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCmdpqvynpcnkcencvsinnn 84
Cdd:PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA--------------------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 85 sflDVIEMDAASNRgIDEIRN-IRDSSNYRPVYGKYKVYIIDEFHML-TREAFNALLKTLEEPPSHVVFILATTNLEKVP 162
Cdd:PHA02544 70 ---EVLFVNGSDCR-IDFVRNrLTRFASTVSLTGGGKVIIIDEFDRLgLADAQRHLRSFMEAYSKNCSFIITANNKNGII 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 163 DTIISRSQIINFKNLGQNEIVEGLKN-------IASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMkithqD 235
Cdd:PHA02544 146 EPLRSRCRVIDFGVPTKEEQIEMMKQmivrckgILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYASTGKI-----D 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 236 TlDILGLFDENFIVQFIENVSNSKIDEF--LVQsedlfNLGKDPEILLEQSIEYIFDSLINEKRSNLIHLMGifnnilkd 313
Cdd:PHA02544 221 A-GILSEVTNSDIDDVVEALKAKDFKAVraLAP-----NYANDYASFVGKLYDELYPQVTPPSIIRLIEIIG-------- 286
|
330
....*....|....*
gi 1341788698 314 lKYSENKRLIFDVEI 328
Cdd:PHA02544 287 -ENNQYHGFAADQEI 300
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
90-221 |
7.48e-15 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 77.19 E-value: 7.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 90 IEMDAASNRGIDEIRN-IRDSSNYRPVYG-KYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIIS 167
Cdd:PRK04132 600 LELNASDERGINVIREkVKEFARTKPIGGaSFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1341788698 168 RSQIINFKNLGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLE 221
Cdd:PRK04132 680 RCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQ 733
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
38-168 |
1.44e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 74.80 E-value: 1.44e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 38 HAYIFSGPRGTGKTTTARILAKVLNCMDPQVY-NPCNKCENCVSINNNSFLD-------VIEMDAASNRG---------- 99
Cdd:PRK06964 22 HALLLHGQAGIGKLDFAQHLAQGLLCETPQPDgEPCGTCAACNWFAQGNHPDyrivrpeALAAEAPGAADeakeadadeg 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 100 ------------IDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIIS 167
Cdd:PRK06964 102 gkktkapskeikIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS 181
|
.
gi 1341788698 168 R 168
Cdd:PRK06964 182 R 182
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
14-211 |
4.08e-14 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 71.84 E-value: 4.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 14 FDEILGQP-------HVVKYFKNALN----KQEVSHAYIFSGPRGTGKTTTARILAKVLNCmdPQVYnpcNKCENCVSin 82
Cdd:COG1223 1 LDDVVGQEeakkklkLIIKELRRRENlrkfGLWPPRKILFYGPPGTGKTMLAEALAGELKL--PLLT---VRLDSLIG-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 83 nnSFLDviemDAASNrgideIRNIRDSSNYRPVygkykVYIIDEFHML------------TREAFNALLKTLEEPPSHVV 150
Cdd:COG1223 74 --SYLG----ETARN-----LRKLFDFARRAPC-----VIFFDEFDAIakdrgdqndvgeVKRVVNALLQELDGLPSGSV 137
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1341788698 151 FIlATTNLEKVPDTIISR--SQIINFKNLGQNEIVEGLKNIASSEGMEYELDaLQIIAKRAKG 211
Cdd:COG1223 138 VI-AATNHPELLDSALWRrfDEVIEFPLPDKEERKEILELNLKKFPLPFELD-LKKLAKKLEG 198
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
25-338 |
1.37e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 71.29 E-value: 1.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 25 KYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVsinnnsFLDVIEMDAASNRGIDEIR 104
Cdd:PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANII------LFDIFDKDLSKSEFLSAIN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 105 NIRDSSNyrpVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRSQIINFKNLGQNEIVE 184
Cdd:PRK07132 80 KLYFSSF---VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 185 GLKNiassegMEYELDALQIIAKRAKGgmrdaismLEQVEKFgemkithqdtldiLGLFDENFIVQFIENVSNSKIDEFL 264
Cdd:PRK07132 157 KLLS------KNKEKEYNWFYAYIFSN--------FEQAEKY-------------INKESENLLKKFEEALNKSLKEKYE 209
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1341788698 265 VQSEDLFNLGKDPEILLEQSIEYIFDSLINEKRSnlihlmgIFNNILKDLKYSENKRLIFDVEILDFMHKYSTT 338
Cdd:PRK07132 210 LILFLNKKLTKENALFLLKLLKFFFKSIFANKKK-------KNPKNIKVAFSKKKKFKIEFFELITIIDEFLNS 276
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
41-235 |
1.85e-13 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 71.87 E-value: 1.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 41 IFSGPRGTGKTTTARILAKVLNcmdpqvynpcnkcencvsinnnsfLDVIEMDAA---------SNRGIDEIrnIRDSSN 111
Cdd:COG0464 195 LLYGPPGTGKTLLARALAGELG------------------------LPLIEVDLSdlvskyvgeTEKNLREV--FDKARG 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 112 YRPVygkykVYIIDEFHML-----------TREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISR-SQIINFKNLGQ 179
Cdd:COG0464 249 LAPC-----VLFIDEADALagkrgevgdgvGRRVVNTLLTEMEELRSDVVVIAATNRPDLLDPALLRRfDEIIFFPLPDA 323
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1341788698 180 NEIVEGLKNIASSEGMEYELDaLQIIAKRAKGG----MRDAI-SMLEQVEKFGEMKITHQD 235
Cdd:COG0464 324 EERLEIFRIHLRKRPLDEDVD-LEELAEATEGLsgadIRNVVrRAALQALRLGREPVTTED 383
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
100-169 |
5.46e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 69.44 E-value: 5.46e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 100 IDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRS 169
Cdd:PRK05917 77 IETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS 146
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
30-175 |
3.55e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 64.21 E-value: 3.55e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 30 ALNKQEVSHAYIFSGPRGTGKTTTARILAK-VL-NCMDPQVYNPCNKCencvsINNNSFLDVIEMDAASNRGIDEIR--- 104
Cdd:PRK08769 19 ALDAGRLGHGLLICGPEGLGKRAVALALAEhVLaSGPDPAAAQRTRQL-----IAAGTHPDLQLVSFIPNRTGDKLRtei 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1341788698 105 ---NIRDSSN---YRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRSQIINFK 175
Cdd:PRK08769 94 vieQVREISQklaLTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
19-172 |
4.06e-11 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 61.01 E-value: 4.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 19 GQPHVVKYFKNALNKQEVSHaYIFSGPRGTGKTTTARILAKVLncmdpqvynpcnkcencvsinNNSFLDVIEMDAASNR 98
Cdd:cd00009 2 GQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANEL---------------------FRPGAPFLYLNASDLL 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 99 GIDEIRNIRDSSNYR-----PVYGKYKVYIIDEFHMLTREAFNALLKTLEE------PPSHVVFILATTNLE--KVPDTI 165
Cdd:cd00009 60 EGLVVAELFGHFLVRllfelAEKAKPGVLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATNRPLlgDLDRAL 139
|
....*..
gi 1341788698 166 ISRSQII 172
Cdd:cd00009 140 YDRLDIR 146
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
40-177 |
1.41e-10 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 58.76 E-value: 1.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 40 YIFSGPRGTGKTTTARILAKVLNCmdpqvynpcnkceNCVSINNNSFLDVIEMDAASNrgideIRNI-RDSSNYRPvygk 118
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGA-------------PFIEISGSELVSKYVGESEKR-----LRELfEAAKKLAP---- 58
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1341788698 119 yKVYIIDEFHML-----------TREAFNALLKTLEEP---PSHVVFILATTNLEKVPDTIISRSQIINFKNL 177
Cdd:pfam00004 59 -CVIFIDEIDALagsrgsggdseSRRVVNQLLTELDGFtssNSKVIVIAATNRPDKLDPALLGRFDRIIEFPL 130
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
28-170 |
2.26e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 61.74 E-value: 2.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 28 KNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCMDPQVyNPCNKCENCVSINNNSFLD--VIEMDAASNR-GIDEIR 104
Cdd:PRK06090 16 KAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-EACGFCHSCELMQSGNHPDlhVIKPEKEGKSiTVEQIR 94
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1341788698 105 NIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRSQ 170
Cdd:PRK06090 95 QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
38-168 |
3.82e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 61.23 E-value: 3.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 38 HAYIFSGPRGTGKTTTARILAKVLNCMDPQVYNPCNKCENCVSINNNSFLDVIEMD---AASNRGIDEIRNIRDSSNYRP 114
Cdd:PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTpekGKSSLGVDAVREVTEKLYEHA 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1341788698 115 VYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISR 168
Cdd:PRK07993 105 RLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
10-224 |
1.11e-09 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 60.84 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 10 RPLDFDEILGQPHVV---KYFKNALNKQEVSHAyIFSGPRGTGKTTTARILAKVLNCmdpqvynpcnkceNCVSINnnsf 86
Cdd:PRK13341 23 RPRTLEEFVGQDHILgegRLLRRAIKADRVGSL-ILYGPPGVGKTTLARIIANHTRA-------------HFSSLN---- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 87 ldviemdaASNRGIDEIRNIRDSSNYR-PVYGKYKVYIIDEFHMLTREAFNALLKTLEEppSHVVFILATTnlE----KV 161
Cdd:PRK13341 85 --------AVLAGVKDLRAEVDRAKERlERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATT--EnpyfEV 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 162 PDTIISRSQIINFKNLGQN---EIVE-GLKNIASSEG---MEYELDALQIIAKRAKGgmrDAISMLEQVE 224
Cdd:PRK13341 153 NKALVSRSRLFRLKSLSDEdlhQLLKrALQDKERGYGdrkVDLEPEAEKHLVDVANG---DARSLLNALE 219
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
71-168 |
1.95e-08 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 55.22 E-value: 1.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 71 PCNKCENCVSINNNSFLDVIEM-DAASNRGIDEIRNIRDSSNYRPV--YGKyKVYIIDEFHMLTREAFNALLKTLEEPPS 147
Cdd:PRK05818 39 FCKTCESCLKILNGKYNDFYLIfDQKNPIKKEDALSIINKLNRPSVesNGK-KIYIIYGIEKLNKQSANSLLKLIEEPPK 117
|
90 100
....*....|....*....|.
gi 1341788698 148 HVVFILATTNLEKVPDTIISR 168
Cdd:PRK05818 118 NTYGIFTTRNENNILNTILSR 138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
40-169 |
2.15e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.15 E-value: 2.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 40 YIFSGPRGTGKTTTARILAKVLNCMDPQV-YNPCNKCENCVSINNNsfLDVIEMDAASNRGIDEIRNIRDssnyRPVYGK 118
Cdd:smart00382 5 ILIVGPPGSGKTTLARALARELGPPGGGViYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALA----LARKLK 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1341788698 119 YKVYIIDEFHMLTREAFNALLKTLEEPPSHV-------VFILATTNLEKVPDTIISRS 169
Cdd:smart00382 79 PDVLILDEITSLLDAEQEALLLLLEELRLLLllkseknLTVILTTNDEKDLGPALLRR 136
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
177-221 |
1.55e-07 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 48.29 E-value: 1.55e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1341788698 177 LGQNEIVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLE 221
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDLQ 45
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
38-240 |
1.31e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 50.41 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 38 HAYIFSGPRGTGKTTTA-RI----LAKVLNCMDPQVYNPCNkcencvsinnnsfLDVIEMDAASNR-------------- 98
Cdd:PRK07471 42 HAWLIGGPQGIGKATLAyRMarflLATPPPGGDGAVPPPTS-------------LAIDPDHPVARRiaagahgglltler 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 99 -------------GIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTI 165
Cdd:PRK07471 109 swnekgkrlrtviTVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTI 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1341788698 166 ISRSQIINFKNLGqneiVEGLKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLeqveKFGEMKItHQDTLDIL 240
Cdd:PRK07471 189 RSRCRKLRLRPLA----PEDVIDALAAAGPDLPDDPRAALAALAEGSVGRALRLA----GGDGLAL-YRRLTALL 254
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
117-281 |
1.94e-06 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 49.48 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 117 GKYKVYIIDEFHMLTR--EAFNALLKTLEEPPSHVVFILATTNLE---KVPDTIISRSQIINFKNLGQNEIVEGLKNIAS 191
Cdd:COG1466 61 GERRLVIVRNAEFLKKpgEGLEALEAYLANPPPDTVLVLTAGKLDkrkKLFKALEKAGVVVECYPLKERELPAWIRQRLK 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 192 SEGMEYELDALQIIAKRAKGGMRDAISMLEQVE--KFGEMKITHQDTLDILGLFDENFIVQFIENVSNSKIDEFLVQSED 269
Cdd:COG1466 141 AAGLRIDPDAAQLLAERVGGDLLALAQELEKLAlyAGDGGTITLEDVEALVGDSAEFNVFDLADALLAGDAARALRILRR 220
|
170
....*....|..
gi 1341788698 270 LFNLGKDPEILL 281
Cdd:COG1466 221 LLAEGEEPVLIL 232
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
41-161 |
2.86e-06 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 46.57 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 41 IFSGPRGTGKTTTARILAKVLNCMDPQVY-----NPCNKCENCVSINNNsfldvIEMDAASNRGIDEIRN-IRDSSNyrp 114
Cdd:pfam13401 9 VLTGESGTGKTTLLRRLLEQLPEVRDSVVfvdlpSGTSPKDLLRALLRA-----LGLPLSGRLSKEELLAaLQQLLL--- 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1341788698 115 VYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILA-TTNLEKV 161
Cdd:pfam13401 81 ALAVAVVLIIDEAQHLSLEALEELRDLLNLSSKLLQLILVgTPELREL 128
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
121-175 |
1.95e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 45.41 E-value: 1.95e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1341788698 121 VYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRSQIINFK 175
Cdd:PRK08485 57 KIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRK 111
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
10-62 |
3.68e-05 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 44.03 E-value: 3.68e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1341788698 10 RPLDFDEILGQPHVVK----YFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLN 62
Cdd:pfam05496 2 RPRTLDEYIGQEKVKEnlkiFIEAAKQRGEALDHVLLYGPPGLGKTTLANIIANEMG 58
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
95-197 |
6.91e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 44.45 E-value: 6.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 95 ASNRGIDEIRNIRDSSNYRPVYGKYKVYIIDEFHMLTREAFNALLKTLEEPPSHVVFILATTNLEKVPDTIISRSQIINF 174
Cdd:PRK06581 66 AKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINV 145
|
90 100
....*....|....*....|....*..
gi 1341788698 175 KNL---GQNEI-VEGLKNIASSEGMEY 197
Cdd:PRK06581 146 RSSilhAYNELySQFIQPIADNKTLDF 172
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
10-62 |
1.29e-04 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 43.97 E-value: 1.29e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1341788698 10 RPLDFDEILGQPHVVK----YFKNALNKQEV-SHAyIFSGPRGTGKTTTARILAKVLN 62
Cdd:PRK00080 20 RPKSLDEFIGQEKVKEnlkiFIEAAKKRGEAlDHV-LLYGPPGLGKTTLANIIANEMG 76
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
8-53 |
1.54e-04 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 44.44 E-value: 1.54e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1341788698 8 KYRPLDFDEILGQPHVVKYFKNALNKQEVSHaYIFSGPRGTGKTTT 53
Cdd:PRK04132 12 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKCLT 56
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
186-238 |
1.12e-03 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 37.45 E-value: 1.12e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1341788698 186 LKNIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKFGEMKITHQDTLD 238
Cdd:cd18133 10 LAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAALGDDGKISLDRVY 62
|
|
| ChlI |
COG1239 |
Mg-chelatase subunit ChlI [Coenzyme transport and metabolism]; |
44-78 |
2.25e-03 |
|
Mg-chelatase subunit ChlI [Coenzyme transport and metabolism];
Pssm-ID: 440852 [Multi-domain] Cd Length: 344 Bit Score: 40.12 E-value: 2.25e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1341788698 44 GPRGTGKTTTARILAKVL-----------NCmDPQvyNPCNKCENC 78
Cdd:COG1239 37 GEKGTAKSTAVRALAALLppievvkgcpyNC-DPD--DPDELCPDC 79
|
|
| COG1373 |
COG1373 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
25-138 |
2.99e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440984 [Multi-domain] Cd Length: 405 Bit Score: 39.93 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 25 KYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKvlncmdpqvynpcnKCENCVSINnnsfLDVIEMDAASNRGIDEIR 104
Cdd:COG1373 8 KILDKLLKLLDNRKAVVITGPRQVGKTTLLKQLAK--------------ELENILYIN----LDDPRLRALAEEDPDDLL 69
|
90 100 110
....*....|....*....|....*....|....
gi 1341788698 105 nirdsSNYRPVYGKYKVYIIDEFHMLtREAFNAL 138
Cdd:COG1373 70 -----EALKELYPGKTYLFLDEIQRV-PEWEDAL 97
|
|
| SK |
cd00464 |
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic ... |
44-63 |
4.73e-03 |
|
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Pssm-ID: 238260 [Multi-domain] Cd Length: 154 Bit Score: 37.54 E-value: 4.73e-03
|
| holA |
TIGR01128 |
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) ... |
114-281 |
6.43e-03 |
|
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex subassembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273455 [Multi-domain] Cd Length: 302 Bit Score: 38.39 E-value: 6.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 114 PVYGKYKVYIIDEFHMLT-REAFNALLKTLEEPPSHVVFILATTNLEK-----VPDTIISRSQIINFKNLGQNEIVEGLK 187
Cdd:TIGR01128 42 PLFSERRLVELRNPEGKPgAKGLKALEEYLANPPPDTLLLIEAPKLDKrkkltKWLKALKNAEIVECKTPKEQELPRWIQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 188 NIASSEGMEYELDALQIIAKRAKGGMRDAISMLEQVEKF-GEMKITHQDTLDILGLFDENFIVQFIENVSNSKIDEFLVQ 266
Cdd:TIGR01128 122 ARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYaPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRI 201
|
170
....*....|....*
gi 1341788698 267 SEDLFNLGKDPEILL 281
Cdd:TIGR01128 202 LKGLLGEGEEPLILL 216
|
|
| TIP49 |
COG1224 |
DNA helicase TIP49, TBP-interacting protein [Transcription]; |
121-253 |
6.71e-03 |
|
DNA helicase TIP49, TBP-interacting protein [Transcription];
Pssm-ID: 440837 [Multi-domain] Cd Length: 452 Bit Score: 38.80 E-value: 6.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1341788698 121 VYIIDEFHMLTREAFNALLKTLEEPPSHVVfILAT---------TNLEK---VPDTIISRSQIINFKNLGQNEIVEGLKN 188
Cdd:COG1224 295 VLFIDDAHMLDIEAFSFLTRAMESELAPII-ILATnrgitkirgTDIESphgIPLDLLDRLLIIPTRPYTEDEIREIIKI 373
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1341788698 189 IASSEGMEYELDALQIIAK-RAKGGMRDAISMLE--QV--EKFGEMKITHQDTLDILGLF-DENFIVQFIE 253
Cdd:COG1224 374 RAEEEDIELSDDALEELTKiGVERSLRYAVQLLEpaYIiaKRRGRSKVTVEDVEEASKLFaDVKESVEYVK 444
|
|
| AroK |
COG0703 |
Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the ... |
41-63 |
7.87e-03 |
|
Shikimate kinase [Amino acid transport and metabolism]; Shikimate kinase is part of the Pathway/BioSystem: Aromatic amino acid biosynthesis
Pssm-ID: 440467 [Multi-domain] Cd Length: 165 Bit Score: 37.03 E-value: 7.87e-03
|
| |
