|
Name |
Accession |
Description |
Interval |
E-value |
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
197-1494 |
0e+00 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 2082.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 197 DEYPDYHRSPRIIYREPVEKMIIAKPSSKPSKPTEHLARIIVPSLVMIVVTVMLSIFQSYGLFIFASLAMTVVTVVVSIT 276
Cdd:TIGR03928 1 KDYPDYHRSPRIIYEEPTDKVKISKPPQEPDKPKRGLLRIILPPLVMIAVTVLISIFQPRGIFIIASIAMSLVTIIFSTT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 277 SYIKNLKQYKIDIAERDKSYREYLMQKTKDLHAESEKQRHALHYHYPDVTEIREMAIEVNPRIYEKTIMHHDFLTYRVGK 356
Cdd:TIGR03928 81 TYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHYHNPSVEELKEMVENVNSRIWEKTPEHHDFLHVRLGT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 357 GNVDTSFEIEFNEEEFSQFKDELIAMARELRQQYLSQADVPVVTDLMNGPVGYIGQRSLVLEQLQLLVMQTALFHSYYDL 436
Cdd:TIGR03928 161 GNVPSSFEIKFPEEEFSQRKDELLDEAQELKEKYNTIENVPIVLDLSNGPIGYVGKRSLVLEELQNLVGQLAFFHSYHDV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 437 QFITVFPEEEKKKWDWMRWLPHASVRDINVRGFVYHDRSRDQVLNSLYQILKERKLKVDeKSNSSEKIHFSPHYVVLITD 516
Cdd:TIGR03928 241 QFVTIFPEEEKKKWEWMRWLPHFWLRDINVRGFVYNERTRDQLLNSLYQILKERKLALD-DANSKEKKRFSPHYVFLITD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 517 EKLILDHVVMEFFNEDPSDLGVSLVFVQDVMQSLPEHVKTVVDIRDSKKGNIILEQGELVNRQFAPDHFpEGFNLEDVAR 596
Cdd:TIGR03928 320 RKLILDHVIMEYLNEDPSELGISLIFVQDVMESLPENVKTVIDIKNRNEGEIVLEEGELVEKSFTPDHL-DNEDLEEYSR 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 597 ALAPLNHLQNLKNSIPESVTFLEMYGVEKIDELNITSRWAKNAAHKSLAVPLGLRGKEDLVNLNLHEKAHGPHGLIAGTT 676
Cdd:TIGR03928 399 TLAPLNHLQNLKNSIPESVTFLEMYGVKKVEELNIQERWAKNETYKSLAVPIGLRGKDDIVYLNLHEKAHGPHGLVAGTT 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 677 GSGKSEIIQSYILSLAVNFHPYEVAFLLIDYKGGGMANLFRNLPHLLGTITNLDGAQSMRALASIKAELQKRQRLFGENN 756
Cdd:TIGR03928 479 GSGKSEILQTYILSLAVNFHPHEVAFLLIDYKGGGMANLFKNLPHLLGTITNLDGAQSMRALASIKAELKKRQRLFGENN 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 757 VNHINQYQKLYKEGAVTEPMPHLFLISDEFAELKAEQPDFMKELVSTARIGRSLGIHLILATQKPTGVVDDQIWSNSKFK 836
Cdd:TIGR03928 559 VNHINQYQKLYKQGKAKEPMPHLFLISDEFAELKSEQPEFMKELVSTARIGRSLGVHLILATQKPSGVVDDQIWSNSRFK 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 837 LALKVQNTSDSNEILKTPDAAEITLPGRAYLQVGNNEIYELFQSAWSGADYVEDKDDQDRLDttIYAINDLGQYEILSED 916
Cdd:TIGR03928 639 LALKVQDASDSNEILKTPDAAEITVPGRAYLQVGNNEVYELFQSAWSGAPYDPDKDKKEEED--IYMINDLGQYELLNED 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 917 LSGLGDNKEIATVPSELDAVIDYIHDYTEERQIEALARPWLPPLPEKIFLQDLHPVHFKEAWNEAKKPLQAIVGLLDQPE 996
Cdd:TIGR03928 717 LSGLKRKKEIKEVPTELEAVIDEIQAYTEELNIEALPSPWLPPLEEKIYLDDLHAVEFDKLWSKPKEPLQATIGLLDDPE 796
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 997 LQSQTPLTLDISKDGHVAVFSSPGYGKSTFLQSVIMDVARQNSPEHLHVYLVDLGTNGLLPLKGLPHVADTITIDEAEKC 1076
Cdd:TIGR03928 797 LQSQEPLTLDLSKDGHLAIFGSPGYGKSTFLQTLIMSLARQHSPEQLHFYLFDFGTNGLLPLKKLPHVADYFTLDEEEKI 876
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1077 LKLVERLTQEMKQRKRMLSEYDVASIEMYEKASGKQMPNIIVAIDNYDAVKEARFYEDFEMLMIQIVRDGASLGIHTLIS 1156
Cdd:TIGR03928 877 EKLIRRIKKEIDRRKKLFSEYGVASISMYNKASGEKLPQIVIIIDNYDAVKEEPFYEDFEELLIQLAREGASLGIYLVMT 956
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1157 AGRQNALRIQLYNNIKLQTCLYMIDQSEISGIVGRSDVKVEEMAGRAIIKLDSPTLFQSVLPTKAEDELQQIQLLQQEAS 1236
Cdd:TIGR03928 957 AGRQNAVRMPLMNNIKTKIALYLIDKSEYRSIVGRTKFTIEEIPGRGLIKKDEPTLFQTALPVKGEDDLEVIENIKAEIQ 1036
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1237 EMDQEWDGERPKAIPMMPEIIDLVTYRKNKDVTKALQAGKVPLGLDFTNVEVVAHDIAVNDHLMVYSADDSIRKQVISSI 1316
Cdd:TIGR03928 1037 KMNEAWTGERPKPIPMVPEELSLEEFRERYEVRKILEEGSIPIGLDEETVEPVYIDLTENPHLLIVGESDDGKTNVLKSL 1116
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1317 LSQMNKDYFESITLVDTAEYSFVQYKDN--VTHYIVEENEVNVHVKYWMEVIRERSLELSQARQEGREIPVFTKQLIIMT 1394
Cdd:TIGR03928 1117 LKTLAKQEKEKIGLIDSIDRGLLAYRDLkeVATYIEEKEDLKEILAELKEEIELREAAYKEALQNETGEPAFKPILLIID 1196
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1395 NVEEFSRLVYLETDDAT-TLMDLSRAVGIYFVLAGHHDYMDRNRDALPMKMRSKLTaGIIAMQLNDQSVFNVKYVSNETS 1473
Cdd:TIGR03928 1197 DLEDFIQRTDLEIQDILaLIMKNGKKLGIHFIVAGTHSELSKSYDGVPKEIKQLRT-GILGMRKSDQSFFKLPFTRSEKE 1275
|
1290 1300
....*....|....*....|.
gi 1267244953 1474 LGKDEVYYYQKGSIMKLKMPR 1494
Cdd:TIGR03928 1276 LEPGEGYFVVNGKYQKIKIPE 1296
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
663-821 |
2.09e-28 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 114.78 E-value: 2.09e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 663 EKAHGPHGLIAGTTGSGKSEIIQSYILSLAVNFHPYEVAFLLIDYKGGGMANLFRnLPHLLGT--ITNLDGAqsMRALAS 740
Cdd:pfam01580 34 LKKMPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKMGELSAYED-IPHLLSVpvATDPKRA--LRALEW 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 741 IKAELQKRQRLFGENNVNHINQYQKLYKE----------------------GAVTEPMPHLFLISDEFAELKAEQPDFMK 798
Cdd:pfam01580 111 LVDEMERRYALFRALGVRSIAGYNGEIAEdpldgfgdvflviygvhvmctaGRWLEILPYLVVIVDERAELRLAAPKDSE 190
|
170 180
....*....|....*....|....*...
gi 1267244953 799 ELVST-----ARIGRSLGIHLILATQKP 821
Cdd:pfam01580 191 MRVEDaivrlAQKGRAAGIHLLLATQRP 218
|
|
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
609-874 |
8.24e-27 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 117.72 E-value: 8.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 609 NSIPESVTFLEMygvekidelnITSRWAKNAAHKsLAVPLGLR--GKEDLVNLNlheKAhgPHGLIAGTTGSGKSEIIQS 686
Cdd:COG1674 237 NKKRETVYLREV----------LESDEFQNSKSP-LPIALGKDisGEPVVADLA---KM--PHLLIAGATGSGKSVCINA 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 687 YILSLAVNFHPYEVAFLLIDYKgggMA--NLFRNLPHLLG-TITNLDGAQSmrALASIKAELQKRQRLFGENNVNHINQY 763
Cdd:COG1674 301 MILSLLYKATPDEVRLILIDPK---MVelSVYNGIPHLLTpVVTDPKKAAN--ALKWAVREMERRYKLFAKAGVRNIAGY 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 764 QKLYKEGAVT-------EPMPHLFLISDEFAEL------KAEQpdfmkelvSTARI---GRSLGIHLILATQKP-----T 822
Cdd:COG1674 376 NEKVREAKAKgeeeeglEPLPYIVVIIDELADLmmvagkEVEE--------AIARLaqkARAAGIHLILATQRPsvdviT 447
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1267244953 823 GVvddqIWSNSKFKLALKVQNTSDSNEILKTPDaAEiTLPGRA---YLQVGNNEI 874
Cdd:COG1674 448 GL----IKANIPSRIAFAVSSKIDSRTILDQGG-AE-KLLGRGdmlFLPPGASKP 496
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
665-851 |
1.87e-20 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 98.62 E-value: 1.87e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 665 AHGPHGLIAGTTGSGKSEIIQSYILSLAVNFHPYEVAFLLIDYKgggMANL--FRNLPHLLG-TITNL-DGAQSMRALAS 740
Cdd:PRK10263 1008 AKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPK---MLELsvYEGIPHLLTeVVTDMkDAANALRWCVN 1084
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 741 ikaELQKRQRLFGENNVNHINQYQKLYKEGA----------------------VTEPMPHLFLISDEFAELKAEQPDFMK 798
Cdd:PRK10263 1085 ---EMERRYKLMSALGVRNLAGYNEKIAEADrmmrpipdpywkpgdsmdaqhpVLKKEPYIVVLVDEFADLMMTVGKKVE 1161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1267244953 799 ELVST-ARIGRSLGIHLILATQKPT-GVVDDQIWSNSKFKLALKVQNTSDSNEIL 851
Cdd:PRK10263 1162 ELIARlAQKARAAGIHLVLATQRPSvDVITGLIKANIPTRIAFTVSSKIDSRTIL 1216
|
|
| FtsK_SpoIIIE_N |
pfam12538 |
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 ... |
4-111 |
1.68e-14 |
|
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 amino acids in length. The family is found in association with pfam01580. The FtsK/SpoIIIE family of DNA transporters are responsible for translocating missegregated chromosomes after the completion of cell division.
Pssm-ID: 372173 Cd Length: 115 Bit Score: 71.27 E-value: 1.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 4 LLALSYGNRLHKCRLHPSErpTVTIGKEWSNHITDFDLDESLLLNWDSE-----LEAWKIGEQVLYFNKANTIQLKNNKA 78
Cdd:pfam12538 1 LLWVFYDDQYQKLNLDDLK--TVTIGNDEEHDVTIPSLEGVIELKWDEDggqylVYQGGEGLQTLEINKSFEVKEDGKDL 78
|
90 100 110
....*....|....*....|....*....|...
gi 1267244953 79 MRIWIATVEEVIVYDTSTKYSIAISKNDYDDIT 111
Cdd:pfam12538 79 TLILVGEAPSTSVYYIGNRDEITISSEEYADIV 111
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
669-839 |
1.97e-06 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 48.75 E-value: 1.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 669 HGLIAGTTGSGKSEiiqsYILSLAVNFHPYEVAFLLIDYKGggmaNLFRNLPhllgtitnlDGAQSMRALASikaelqkr 748
Cdd:cd01127 1 NTLVLGTTGSGKTT----SIVIPLLDQAARGGSVIITDPKG----ELFLVIP---------DRDDSFAALRA-------- 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 749 qrLFgennVNHINQ--YQKLYKEGAVTEpmPHLFLISDEFAELKAeqPDFMKELVSTariGRSLGIHLILATQ------K 820
Cdd:cd01127 56 --LF----FNQLFRalTELASLSPGRLP--RRVWFILDEFANLGR--IPNLPNLLAT---GRKRGISVVLILQslaqleA 122
|
170 180
....*....|....*....|
gi 1267244953 821 PTGVVDDQ-IWSNSKFKLAL 839
Cdd:cd01127 123 VYGKDGAQtILGNCNTKLYL 142
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
197-1494 |
0e+00 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 2082.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 197 DEYPDYHRSPRIIYREPVEKMIIAKPSSKPSKPTEHLARIIVPSLVMIVVTVMLSIFQSYGLFIFASLAMTVVTVVVSIT 276
Cdd:TIGR03928 1 KDYPDYHRSPRIIYEEPTDKVKISKPPQEPDKPKRGLLRIILPPLVMIAVTVLISIFQPRGIFIIASIAMSLVTIIFSTT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 277 SYIKNLKQYKIDIAERDKSYREYLMQKTKDLHAESEKQRHALHYHYPDVTEIREMAIEVNPRIYEKTIMHHDFLTYRVGK 356
Cdd:TIGR03928 81 TYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHYHNPSVEELKEMVENVNSRIWEKTPEHHDFLHVRLGT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 357 GNVDTSFEIEFNEEEFSQFKDELIAMARELRQQYLSQADVPVVTDLMNGPVGYIGQRSLVLEQLQLLVMQTALFHSYYDL 436
Cdd:TIGR03928 161 GNVPSSFEIKFPEEEFSQRKDELLDEAQELKEKYNTIENVPIVLDLSNGPIGYVGKRSLVLEELQNLVGQLAFFHSYHDV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 437 QFITVFPEEEKKKWDWMRWLPHASVRDINVRGFVYHDRSRDQVLNSLYQILKERKLKVDeKSNSSEKIHFSPHYVVLITD 516
Cdd:TIGR03928 241 QFVTIFPEEEKKKWEWMRWLPHFWLRDINVRGFVYNERTRDQLLNSLYQILKERKLALD-DANSKEKKRFSPHYVFLITD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 517 EKLILDHVVMEFFNEDPSDLGVSLVFVQDVMQSLPEHVKTVVDIRDSKKGNIILEQGELVNRQFAPDHFpEGFNLEDVAR 596
Cdd:TIGR03928 320 RKLILDHVIMEYLNEDPSELGISLIFVQDVMESLPENVKTVIDIKNRNEGEIVLEEGELVEKSFTPDHL-DNEDLEEYSR 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 597 ALAPLNHLQNLKNSIPESVTFLEMYGVEKIDELNITSRWAKNAAHKSLAVPLGLRGKEDLVNLNLHEKAHGPHGLIAGTT 676
Cdd:TIGR03928 399 TLAPLNHLQNLKNSIPESVTFLEMYGVKKVEELNIQERWAKNETYKSLAVPIGLRGKDDIVYLNLHEKAHGPHGLVAGTT 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 677 GSGKSEIIQSYILSLAVNFHPYEVAFLLIDYKGGGMANLFRNLPHLLGTITNLDGAQSMRALASIKAELQKRQRLFGENN 756
Cdd:TIGR03928 479 GSGKSEILQTYILSLAVNFHPHEVAFLLIDYKGGGMANLFKNLPHLLGTITNLDGAQSMRALASIKAELKKRQRLFGENN 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 757 VNHINQYQKLYKEGAVTEPMPHLFLISDEFAELKAEQPDFMKELVSTARIGRSLGIHLILATQKPTGVVDDQIWSNSKFK 836
Cdd:TIGR03928 559 VNHINQYQKLYKQGKAKEPMPHLFLISDEFAELKSEQPEFMKELVSTARIGRSLGVHLILATQKPSGVVDDQIWSNSRFK 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 837 LALKVQNTSDSNEILKTPDAAEITLPGRAYLQVGNNEIYELFQSAWSGADYVEDKDDQDRLDttIYAINDLGQYEILSED 916
Cdd:TIGR03928 639 LALKVQDASDSNEILKTPDAAEITVPGRAYLQVGNNEVYELFQSAWSGAPYDPDKDKKEEED--IYMINDLGQYELLNED 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 917 LSGLGDNKEIATVPSELDAVIDYIHDYTEERQIEALARPWLPPLPEKIFLQDLHPVHFKEAWNEAKKPLQAIVGLLDQPE 996
Cdd:TIGR03928 717 LSGLKRKKEIKEVPTELEAVIDEIQAYTEELNIEALPSPWLPPLEEKIYLDDLHAVEFDKLWSKPKEPLQATIGLLDDPE 796
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 997 LQSQTPLTLDISKDGHVAVFSSPGYGKSTFLQSVIMDVARQNSPEHLHVYLVDLGTNGLLPLKGLPHVADTITIDEAEKC 1076
Cdd:TIGR03928 797 LQSQEPLTLDLSKDGHLAIFGSPGYGKSTFLQTLIMSLARQHSPEQLHFYLFDFGTNGLLPLKKLPHVADYFTLDEEEKI 876
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1077 LKLVERLTQEMKQRKRMLSEYDVASIEMYEKASGKQMPNIIVAIDNYDAVKEARFYEDFEMLMIQIVRDGASLGIHTLIS 1156
Cdd:TIGR03928 877 EKLIRRIKKEIDRRKKLFSEYGVASISMYNKASGEKLPQIVIIIDNYDAVKEEPFYEDFEELLIQLAREGASLGIYLVMT 956
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1157 AGRQNALRIQLYNNIKLQTCLYMIDQSEISGIVGRSDVKVEEMAGRAIIKLDSPTLFQSVLPTKAEDELQQIQLLQQEAS 1236
Cdd:TIGR03928 957 AGRQNAVRMPLMNNIKTKIALYLIDKSEYRSIVGRTKFTIEEIPGRGLIKKDEPTLFQTALPVKGEDDLEVIENIKAEIQ 1036
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1237 EMDQEWDGERPKAIPMMPEIIDLVTYRKNKDVTKALQAGKVPLGLDFTNVEVVAHDIAVNDHLMVYSADDSIRKQVISSI 1316
Cdd:TIGR03928 1037 KMNEAWTGERPKPIPMVPEELSLEEFRERYEVRKILEEGSIPIGLDEETVEPVYIDLTENPHLLIVGESDDGKTNVLKSL 1116
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1317 LSQMNKDYFESITLVDTAEYSFVQYKDN--VTHYIVEENEVNVHVKYWMEVIRERSLELSQARQEGREIPVFTKQLIIMT 1394
Cdd:TIGR03928 1117 LKTLAKQEKEKIGLIDSIDRGLLAYRDLkeVATYIEEKEDLKEILAELKEEIELREAAYKEALQNETGEPAFKPILLIID 1196
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1395 NVEEFSRLVYLETDDAT-TLMDLSRAVGIYFVLAGHHDYMDRNRDALPMKMRSKLTaGIIAMQLNDQSVFNVKYVSNETS 1473
Cdd:TIGR03928 1197 DLEDFIQRTDLEIQDILaLIMKNGKKLGIHFIVAGTHSELSKSYDGVPKEIKQLRT-GILGMRKSDQSFFKLPFTRSEKE 1275
|
1290 1300
....*....|....*....|.
gi 1267244953 1474 LGKDEVYYYQKGSIMKLKMPR 1494
Cdd:TIGR03928 1276 LEPGEGYFVVNGKYQKIKIPE 1296
|
|
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
232-887 |
2.37e-84 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 291.11 E-value: 2.37e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 232 HLARIIVPsLVMIVVTV--MLSIFQSYG------------LFIFASLAMTVVTVVVsitsyiKNLKQYKIDiAERdKSYR 297
Cdd:TIGR03924 2 PLLQKLLP-VVMVVAVVgmVVMMFASGGrqrnpmflifplMMLVSMLGMLAGGRGG------GGKKTPELD-EDR-RDYL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 298 EYLMQKTKDLHAESEKQRHALHYHYPDVTEIreMAIEVNPRIYEKTIMHHDFLTYRVGKGNVDTSFEIEFNEEEFSQFKD 377
Cdd:TIGR03924 73 RYLDQLRREVRETAAAQRAALEWRHPDPDTL--WALVGTPRMWERRPGDPDFLEVRVGVGVQPLATRLVVPETGPVEDLE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 378 ELIAMA-RELRQQYLSQADVPVVTDLMNGP-VGYIGQRSLVLEQLQLLVMQTALFHSYYDLQfITVFPEEEKKKWDWMRW 455
Cdd:TIGR03924 151 PVTAVAlRRFLRAHSTVPDLPVAVSLRGFArISLVGDRDQARALARAMLCQLAVFHGPDDVG-IAVVTSDPDRDWDWLKW 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 456 LPHA---SVRD--INVRgFVYHdrSRDQVLNSLYQILKERKLKVDEKSNSSekihfsPHyVVLITDEKLILDhvVMEFFN 530
Cdd:TIGR03924 230 LPHNqhpTRFDaaGPAR-LVYT--SLAELEAALAELLADRGRFSPDDAASL------PH-LVVVVDGGDLPG--WEDLIG 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 531 EDPSDlGVSLVFVQDVMQSLPEHVKTVVDIRDskkGNIILEQGELVNRQF-APDHFPEGFnLEDVARALAPLNHLQNLKN 609
Cdd:TIGR03924 298 ESGLD-GVTVIDLGGSLPGLPDRRGLRLVVEA---DRLDARTADGVEEFGvAPDQLSIAE-AEALARRLARWRAATAGTV 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 610 SIPESV--TFLEMYGVEKIDELNITSRWAKNAAHKSLAVPLGLRGKEDLVNLNLHEKAH---GPHGLIAGTTGSGKSEII 684
Cdd:TIGR03924 373 DAPLTGarDLLELLGIGDPATLDVDRLWRPRPGRDRLRVPIGVGDDGEPVELDLKESAEggmGPHGLCIGATGSGKSELL 452
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 685 QSYILSLAVNFHPYEVAFLLIDYKGGGMANLFRNLPHLLGTITNLDGAQSM--RALASIKAELQKRQRLFGE-NNVNHIN 761
Cdd:TIGR03924 453 RTLVLGLAATHSPEQLNLVLVDFKGGATFLGLEGLPHVSAVITNLADEAPLvdRMQDALAGEMNRRQELLRAaGNFANVA 532
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 762 QYQKLYKEGAVTEPMPHLFLISDEFAELKAEQPDFMKELVSTARIGRSLGIHLILATQKPTGVVDDQIWSNSKFKLALKV 841
Cdd:TIGR03924 533 EYEKARAAGADLPPLPALFVVVDEFSELLSQHPDFADLFVAIGRLGRSLGVHLLLASQRLDEGRLRGLESHLSYRIGLKT 612
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 1267244953 842 QNTSDSNEILKTPDAAEI-TLPGRAYLQVGNNEIyELFQSAWSGADY 887
Cdd:TIGR03924 613 FSASESRAVLGVPDAYHLpSTPGAGYLKVDTAEP-VRFRAAYVSGPY 658
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
954-1332 |
1.86e-44 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 170.94 E-value: 1.86e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 954 RPWLPPLPEKIFLQDLHPVHFKEAWN---EAKKPLQAIVGLLDQPELQSQTPLTLDIS-KDGHVAVFSSPGYGKSTFLQS 1029
Cdd:TIGR03925 19 QVWLPPLPEPPALDDLLPRLDVDPWRvdyGQRGRLTVPVGIVDRPFEQRQDPLVVDLSgAAGHVAIVGAPQSGKSTALRT 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1030 VIMDVARQNSPEHLHVYLVDLGTNGLLPLKGLPHVADTITIDEAEKCLKLVERLTQEMKQRKRMLSEYDVASIEMYEKAS 1109
Cdd:TIGR03925 99 LILALALTHTPEEVQFYCLDFGGGGLASLADLPHVGGVAGRLDPERVRRTVAEVEGLLRRRERLFRTHGIDSMAQYRARR 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1110 GKQMP------NIIVAIDNYDAvkearFYEDFEMLM---IQIVRDGASLGIHTLISAGRQNALRIQLYNNIKLQTCLYMI 1180
Cdd:TIGR03925 179 AAGRLpedpfgDVFLVIDGWGT-----LRQDFEDLEdkvTDLAARGLAYGVHVVLTASRWSEIRPALRDLIGTRIELRLG 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1181 DQSEiSGIVGRSDVKV-EEMAGRAIikldSPTL--FQSVLPTKAEDELQQIQLLQQEASEMDQEWDGERPKAIPMMPEII 1257
Cdd:TIGR03925 254 DPMD-SEIDRRAAARVpAGRPGRGL----TPDGlhMLIALPRLDGIASVDDLGTRGLVAVIRDVWGGPPAPPVRLLPARL 328
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1267244953 1258 DLVTYRKNKDVTkalqAGKVPLGLDFTNVEVVAHDIAVNDHLMVYSADDSIRKQVISSILSQMNKDYFES---ITLVD 1332
Cdd:TIGR03925 329 PLSALPAGGGAP----RLRVPLGLGESDLAPVYVDFAESPHLLIFGDSESGKTTLLRTIARGIVRRYSPDqarLVVVD 402
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
639-1126 |
4.84e-33 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 136.66 E-value: 4.84e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 639 AAHKSLAVPLGL-----RGKEDLVNLNLHekAHGPHGLIAGTTGSGKSEIIQSYILSLAVNFHPYEVAFLLIDYKGGGMA 713
Cdd:TIGR03925 48 GQRGRLTVPVGIvdrpfEQRQDPLVVDLS--GAAGHVAIVGAPQSGKSTALRTLILALALTHTPEEVQFYCLDFGGGGLA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 714 NLfRNLPHLLGTITNLDGAQSMRALASIKAELQKRQRLFGENNVNHINQYQKLYKEGAVTE-PMPHLFLISDEFAELKAE 792
Cdd:TIGR03925 126 SL-ADLPHVGGVAGRLDPERVRRTVAEVEGLLRRRERLFRTHGIDSMAQYRARRAAGRLPEdPFGDVFLVIDGWGTLRQD 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 793 QPDFMKELVSTARIGRSLGIHLILATQKPTGV---VDDQIWSNSKFKLALKVQNTSDSNEILKTPDaaeiTLPGRaylqv 869
Cdd:TIGR03925 205 FEDLEDKVTDLAARGLAYGVHVVLTASRWSEIrpaLRDLIGTRIELRLGDPMDSEIDRRAAARVPA----GRPGR----- 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 870 GNNEIYELFQSAWSGADYVEDKDDQdrldttiyAINDLGQyeilsedlsglgdnkEIATVPSELDAvidyihdyteerqi 949
Cdd:TIGR03925 276 GLTPDGLHMLIALPRLDGIASVDDL--------GTRGLVA---------------VIRDVWGGPPA-------------- 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 950 ealarPWLPPLPEKIFLQDLHPvhfkeawNEAKKPLQAIVGlLDQPELQsqtPLTLDISKDGHVAVFSSPGYGKSTFLQS 1029
Cdd:TIGR03925 319 -----PPVRLLPARLPLSALPA-------GGGAPRLRVPLG-LGESDLA---PVYVDFAESPHLLIFGDSESGKTTLLRT 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1030 VIMDVARQNSPEHLHVYLVDLGTnGLLPLKGLPHVAD-TITIDEAEkclKLVERLTQEMKQRkrmLSEYDVASIEMYEKA 1108
Cdd:TIGR03925 383 IARGIVRRYSPDQARLVVVDYRR-TLLGAVPEDYLAGyAATSAALT---ELIAALAALLERR---LPGPDVTPQQLRARS 455
|
490 500
....*....|....*....|
gi 1267244953 1109 --SGkqmPNIIVAIDNYDAV 1126
Cdd:TIGR03925 456 wwSG---PEIYVVVDDYDLV 472
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
663-821 |
2.09e-28 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 114.78 E-value: 2.09e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 663 EKAHGPHGLIAGTTGSGKSEIIQSYILSLAVNFHPYEVAFLLIDYKGGGMANLFRnLPHLLGT--ITNLDGAqsMRALAS 740
Cdd:pfam01580 34 LKKMPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKMGELSAYED-IPHLLSVpvATDPKRA--LRALEW 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 741 IKAELQKRQRLFGENNVNHINQYQKLYKE----------------------GAVTEPMPHLFLISDEFAELKAEQPDFMK 798
Cdd:pfam01580 111 LVDEMERRYALFRALGVRSIAGYNGEIAEdpldgfgdvflviygvhvmctaGRWLEILPYLVVIVDERAELRLAAPKDSE 190
|
170 180
....*....|....*....|....*...
gi 1267244953 799 ELVST-----ARIGRSLGIHLILATQKP 821
Cdd:pfam01580 191 MRVEDaivrlAQKGRAAGIHLLLATQRP 218
|
|
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
609-874 |
8.24e-27 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 117.72 E-value: 8.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 609 NSIPESVTFLEMygvekidelnITSRWAKNAAHKsLAVPLGLR--GKEDLVNLNlheKAhgPHGLIAGTTGSGKSEIIQS 686
Cdd:COG1674 237 NKKRETVYLREV----------LESDEFQNSKSP-LPIALGKDisGEPVVADLA---KM--PHLLIAGATGSGKSVCINA 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 687 YILSLAVNFHPYEVAFLLIDYKgggMA--NLFRNLPHLLG-TITNLDGAQSmrALASIKAELQKRQRLFGENNVNHINQY 763
Cdd:COG1674 301 MILSLLYKATPDEVRLILIDPK---MVelSVYNGIPHLLTpVVTDPKKAAN--ALKWAVREMERRYKLFAKAGVRNIAGY 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 764 QKLYKEGAVT-------EPMPHLFLISDEFAEL------KAEQpdfmkelvSTARI---GRSLGIHLILATQKP-----T 822
Cdd:COG1674 376 NEKVREAKAKgeeeeglEPLPYIVVIIDELADLmmvagkEVEE--------AIARLaqkARAAGIHLILATQRPsvdviT 447
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1267244953 823 GVvddqIWSNSKFKLALKVQNTSDSNEILKTPDaAEiTLPGRA---YLQVGNNEI 874
Cdd:COG1674 448 GL----IKANIPSRIAFAVSSKIDSRTILDQGG-AE-KLLGRGdmlFLPPGASKP 496
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
665-851 |
1.87e-20 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 98.62 E-value: 1.87e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 665 AHGPHGLIAGTTGSGKSEIIQSYILSLAVNFHPYEVAFLLIDYKgggMANL--FRNLPHLLG-TITNL-DGAQSMRALAS 740
Cdd:PRK10263 1008 AKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPK---MLELsvYEGIPHLLTeVVTDMkDAANALRWCVN 1084
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 741 ikaELQKRQRLFGENNVNHINQYQKLYKEGA----------------------VTEPMPHLFLISDEFAELKAEQPDFMK 798
Cdd:PRK10263 1085 ---EMERRYKLMSALGVRNLAGYNEKIAEADrmmrpipdpywkpgdsmdaqhpVLKKEPYIVVLVDEFADLMMTVGKKVE 1161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1267244953 799 ELVST-ARIGRSLGIHLILATQKPT-GVVDDQIWSNSKFKLALKVQNTSDSNEIL 851
Cdd:PRK10263 1162 ELIARlAQKARAAGIHLVLATQRPSvDVITGLIKANIPTRIAFTVSSKIDSRTIL 1216
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
990-1159 |
3.45e-15 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 76.26 E-value: 3.45e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 990 GLLDQPELQSQTPLTLDISK-DGHVAVFSSPGYGKSTFLQSVIMDVARQNSPEHLHVYLVDLGTNGLLPLKGLPHVADTI 1068
Cdd:pfam01580 17 LPIALGKDISGNPEVFDLKKmPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKMGELSAYEDIPHLLSVP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1069 TIDEAEKCLKLVERLTQEMKQRKRMLSEYDVASIEMY---------------------------EKASGKQMPNIIVAID 1121
Cdd:pfam01580 97 VATDPKRALRALEWLVDEMERRYALFRALGVRSIAGYngeiaedpldgfgdvflviygvhvmctAGRWLEILPYLVVIVD 176
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1267244953 1122 NY-----DAVKEARFYEDFemLMIQIVRDGASLGIHTLISAGR 1159
Cdd:pfam01580 177 ERaelrlAAPKDSEMRVED--AIVRLAQKGRAAGIHLLLATQR 217
|
|
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
1001-1159 |
4.10e-15 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 80.79 E-value: 4.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1001 TPLTLDI---SKDG---HVAVFSSPGYGKSTFLQSVIMDVARQNSPEHLHVYLVDL-GTNGLLPLKGLPHVADTIT--ID 1071
Cdd:TIGR03924 420 EPVELDLkesAEGGmgpHGLCIGATGSGKSELLRTLVLGLAATHSPEQLNLVLVDFkGGATFLGLEGLPHVSAVITnlAD 499
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 1072 EAEkclkLVER----LTQEMKQRKRMLSEY-DVASIEMYEKA--SGK---QMPNIIVAIDnydavkeaRFYE------DF 1135
Cdd:TIGR03924 500 EAP----LVDRmqdaLAGEMNRRQELLRAAgNFANVAEYEKAraAGAdlpPLPALFVVVD--------EFSEllsqhpDF 567
|
170 180
....*....|....*....|....
gi 1267244953 1136 EMLMIQIVRDGASLGIHTLISAGR 1159
Cdd:TIGR03924 568 ADLFVAIGRLGRSLGVHLLLASQR 591
|
|
| FtsK_SpoIIIE_N |
pfam12538 |
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 ... |
4-111 |
1.68e-14 |
|
DNA transporter; This domain family is found in bacteria, and is typically between 107 and 121 amino acids in length. The family is found in association with pfam01580. The FtsK/SpoIIIE family of DNA transporters are responsible for translocating missegregated chromosomes after the completion of cell division.
Pssm-ID: 372173 Cd Length: 115 Bit Score: 71.27 E-value: 1.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 4 LLALSYGNRLHKCRLHPSErpTVTIGKEWSNHITDFDLDESLLLNWDSE-----LEAWKIGEQVLYFNKANTIQLKNNKA 78
Cdd:pfam12538 1 LLWVFYDDQYQKLNLDDLK--TVTIGNDEEHDVTIPSLEGVIELKWDEDggqylVYQGGEGLQTLEINKSFEVKEDGKDL 78
|
90 100 110
....*....|....*....|....*....|...
gi 1267244953 79 MRIWIATVEEVIVYDTSTKYSIAISKNDYDDIT 111
Cdd:pfam12538 79 TLILVGEAPSTSVYYIGNRDEITISSEEYADIV 111
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
669-839 |
1.97e-06 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 48.75 E-value: 1.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 669 HGLIAGTTGSGKSEiiqsYILSLAVNFHPYEVAFLLIDYKGggmaNLFRNLPhllgtitnlDGAQSMRALASikaelqkr 748
Cdd:cd01127 1 NTLVLGTTGSGKTT----SIVIPLLDQAARGGSVIITDPKG----ELFLVIP---------DRDDSFAALRA-------- 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 749 qrLFgennVNHINQ--YQKLYKEGAVTEpmPHLFLISDEFAELKAeqPDFMKELVSTariGRSLGIHLILATQ------K 820
Cdd:cd01127 56 --LF----FNQLFRalTELASLSPGRLP--RRVWFILDEFANLGR--IPNLPNLLAT---GRKRGISVVLILQslaqleA 122
|
170 180
....*....|....*....|
gi 1267244953 821 PTGVVDDQ-IWSNSKFKLAL 839
Cdd:cd01127 123 VYGKDGAQtILGNCNTKLYL 142
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
645-850 |
3.67e-06 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 51.15 E-value: 3.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 645 AVPLG-LRGKEDLVNLNLhEKAHGPHGLIAGTTGSGKSeiiqSYILSLAVNFHPYEVAFLLIDYKG--GGMA-------- 713
Cdd:COG0433 25 GILIGkLLSPGVPVYLDL-DKLLNRHILILGATGSGKS----NTLQVLLEELSRAGVPVLVFDPHGeySGLAepgaerad 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 714 -NLF-----RNLP--------------HLLGTITNLDGAQSM---RALASIKAE-------------------------- 744
Cdd:COG0433 100 vGVFdpgagRPLPinpwdlfataselgPLLLSRLDLNDTQRGvlrEALRLADDKglllldlkdlialleegeelgeeygn 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 745 ---------------LQKRQRLFGEN-----------------NVNHINQ--------------YQKLYKEGAVTEPMPH 778
Cdd:COG0433 180 vsaasagallrrlesLESADGLFGEPgldledllrtdgrvtviDLSGLPEelqstfvlwllrelFEARPEVGDADDRKLP 259
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1267244953 779 LFLISDE---FAelKAEQPDFMKELVSTARIGRSLGIHLILATQKPTGvVDDQIWSNSKFKLALKVQNTSDSNEI 850
Cdd:COG0433 260 LVLVIDEahlLA--PAAPSALLEILERIAREGRKFGVGLILATQRPSD-IDEDVLSQLGTQIILRLFNPRDQKAV 331
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
644-817 |
4.68e-06 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 51.15 E-value: 4.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 644 LAVPLGLRGKE-DLVNLNLHEKahgPHGLIAGTTGSGKSEIIQSYILSLAVNFHPYEVAFLLIDYKGGgmanLFRNLP-- 720
Cdd:TIGR03925 342 LRVPLGLGESDlAPVYVDFAES---PHLLIFGDSESGKTTLLRTIARGIVRRYSPDQARLVVVDYRRT----LLGAVPed 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 721 HLLGTITNLDGAQSmrALASIKAELQKRqrlfgennvnhinqyqkLYKEGAVTEPM--------PHLFLISDEFAELKAE 792
Cdd:TIGR03925 415 YLAGYAATSAALTE--LIAALAALLERR-----------------LPGPDVTPQQLrarswwsgPEIYVVVDDYDLVATG 475
|
170 180
....*....|....*....|....*
gi 1267244953 793 QPDFMKELVSTARIGRSLGIHLILA 817
Cdd:TIGR03925 476 SGNPLAPLVELLPHARDIGLHVVVA 500
|
|
| NACHT |
COG5635 |
Predicted NTPase, NACHT family domain [Signal transduction mechanisms]; |
907-1094 |
1.29e-03 |
|
Predicted NTPase, NACHT family domain [Signal transduction mechanisms];
Pssm-ID: 444362 [Multi-domain] Cd Length: 935 Bit Score: 43.64 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 907 LGQYEILSEDLSGLGDNKEIATVPSELDAVIDYIHDYTEERQIEALARPWLPPLPEKIFLQDLHPVHFKEAWNEAKKPLQ 986
Cdd:COG5635 77 LSALLLVLLLLESLLLLLLLLLLLAEALLALLELAALLKAVLLSLSGGSDLVLLLSESDLLLALLILLLDADGLLVSLDD 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 987 AIVGLLDQPELQSQTPLTLDISKDGHVAVFSSPGYGKSTFLQSVIMDVARQNSPEHLHV-YLVDLGTngllpLKGLPHVA 1065
Cdd:COG5635 157 LYVPLNLLERIESLKRLELLEAKKKRLLILGEPGSGKTTLLRYLALELAERYLDAEDPIpILIELRD-----LAEEASLE 231
|
170 180
....*....|....*....|....*....
gi 1267244953 1066 DTITiDEAEKCLKLVERLTQEMKQRKRML 1094
Cdd:COG5635 232 DLLA-EALEKRGGEPEDALERLLRNGRLL 259
|
|
| TraG-D_C |
pfam12696 |
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as ... |
778-850 |
1.30e-03 |
|
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.
Pssm-ID: 432726 [Multi-domain] Cd Length: 125 Bit Score: 40.33 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 778 HLFLISDEFAELkAEQPDFmKELVSTariGRSLGIHLILATQKPTGVVD-------DQIWSNSKFKLALKVQNTSDSNEI 850
Cdd:pfam12696 1 PVLFVLDEFANL-GKIPDL-EKLIST---GRSRGISLMLILQSIAQLEElygkdgaETILGNCNTKVFLGGGDEETAKYL 75
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
777-850 |
1.37e-03 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 43.05 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 777 PHLFLISDEFAELKaeQPDFMKELVSTariGRSLGIHLILATQKPTGVVD-------DQIWSNSKFKLALKVQNTSDSNE 849
Cdd:COG3505 247 RPVLLLLDEFANLG--RLPSLETLLAT---GRGYGIRLVLILQSLAQLEAiygeegaETILGNCGTKIFLGVNDPETAEY 321
|
.
gi 1267244953 850 I 850
Cdd:COG3505 322 L 322
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
656-736 |
2.03e-03 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 42.63 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1267244953 656 LVNLNLHEKAHGPHGLIAGTTGSGKSEIIQSYILSLAVnfhpYEVAFLLIDyKGGGMANLFRNLPhllGTITNLDGAQSM 735
Cdd:COG3451 193 PVFFDFHDGLDNGNTLILGPSGSGKSFLLKLLLLQLLR----YGARIVIFD-PGGSYEILVRALG---GTYIDLSPGSPT 264
|
.
gi 1267244953 736 R 736
Cdd:COG3451 265 G 265
|
|
| |
