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Conserved domains on  [gi|1248064453|ref|WP_096568394|]
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DUF4376 domain-containing protein [Campylobacter sp. 110]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4376 super family cl16786
Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and ...
 120-204 4.67e-04

Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.


The actual alignment was detected with superfamily member pfam14301:

Pssm-ID: 433852  Cd Length: 102  Bit Score: 38.10  E-value: 4.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248064453 120 TTFQIDTEAKINISGKVseiMLANLNNTPLENiAWIDQDNKITTFNKEEFLEFGVGIAKYTESIIFKNDELRNKVKNATS 199
Cdd:pfam14301  21 KRIDTDPESRLRLMGVL---LAAKLPGEQGTP-AWTLADNSTVTLTAEQLIALGQAVTQHVQACFDRAREHKAAIEAAET 96


                  ....*
gi 1248064453 200 LEELN 204
Cdd:pfam14301  97 LEAVE 101
 
Name Accession Description Interval E-value
DUF4376 pfam14301
Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and ...
 120-204 4.67e-04

Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.


Pssm-ID: 433852  Cd Length: 102  Bit Score: 38.10  E-value: 4.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248064453 120 TTFQIDTEAKINISGKVseiMLANLNNTPLENiAWIDQDNKITTFNKEEFLEFGVGIAKYTESIIFKNDELRNKVKNATS 199
Cdd:pfam14301  21 KRIDTDPESRLRLMGVL---LAAKLPGEQGTP-AWTLADNSTVTLTAEQLIALGQAVTQHVQACFDRAREHKAAIEAAET 96


                  ....*
gi 1248064453 200 LEELN 204
Cdd:pfam14301  97 LEAVE 101
 
Name Accession Description Interval E-value
DUF4376 pfam14301
Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and ...
 120-204 4.67e-04

Domain of unknown function (DUF4376); This domain family is found in bacteria and viruses, and is approximately 110 amino acids in length.


Pssm-ID: 433852  Cd Length: 102  Bit Score: 38.10  E-value: 4.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1248064453 120 TTFQIDTEAKINISGKVseiMLANLNNTPLENiAWIDQDNKITTFNKEEFLEFGVGIAKYTESIIFKNDELRNKVKNATS 199
Cdd:pfam14301  21 KRIDTDPESRLRLMGVL---LAAKLPGEQGTP-AWTLADNSTVTLTAEQLIALGQAVTQHVQACFDRAREHKAAIEAAET 96


                  ....*
gi 1248064453 200 LEELN 204
Cdd:pfam14301  97 LEAVE 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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