|
Name |
Accession |
Description |
Interval |
E-value |
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1-1036 |
4.02e-49 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 189.79 E-value: 4.02e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 1 MKPIYLEMNYFGPHAHSEIDFRALdEAPLFLISGDTGAGKSTIFDAMTYALFDKTTGDREA-REMRSQFAQPDQRTEVIF 79
Cdd:TIGR00618 1 MKPLRLTLKNFGSYKGTHTIDFTA-LGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEViRSLNSLYAAPSEAAFAEL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 80 YFEQGNFLYKVQRCPEQEVFKKRGTGTKTEKSQASlaivdrvfGIEQASLATKPVDVASEIYGLLNLSAEQFKKIILLPQ 159
Cdd:TIGR00618 80 EFSLGTKIYRVHRTLRCTRSHRKTEQPEQLYLEQK--------KGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLPQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 160 NDFSRFLKSATNEKEEILKKIFGTAIFTVFSEEVRnqytKNNQENATLDSILQSQYSSsvwteeEAKALEECPDKEKFDK 239
Cdd:TIGR00618 152 GEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEF----AKKKSLHGKAELLTLRSQL------LTLCTPCMPDTYHERK 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 240 ATEFLEQKQMQESKARDlaKIAQQQVETIDKAYEDALLLEREFLEAEKTQKEYQEKIAEQAafyEQQKEAYEARSWAQqF 319
Cdd:TIGR00618 222 QVLEKELKHLREALQQT--QQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLE---ETQERINRARKAAP-L 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 320 KDILRDLEKVEKELEANQVREADYRSKAEQEQKILGEVKKREQDLDQKASEFEEKGKGIEELTRTITQAEQAEKLIWQKK 399
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQH 375
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 400 DLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEILDESILQEEKDALSRLKLDFHQQLSPLAEYLERLKQENQVAQKELN 479
Cdd:TIGR00618 376 TLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEK 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 480 FAEENIAKMEQDF--------MLKQESYQEKRKLRQSLMIAQLQKELedglPCKVCGATEHPLSHVELDVSDDDLKAAMQ 551
Cdd:TIGR00618 456 LEKIHLQESAQSLkereqqlqTKEQIHLQETRKKAVVLARLLELQEE----PCPLCGSCIHPNPARQDIDNPGPLTRRMQ 531
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 552 QVdeaQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEMEQKFdQVYSQFCQAHEGSFPKVFSCQELNIIFQAREDSYR 631
Cdd:TIGR00618 532 RG---EQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSF-SILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAE 607
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 632 QKSTAQKERSLEKEKLRVLVENLEAERQGLFQESDKVKAQLEIVAQSLAEFGQLQPSQALKEQKVILRQEVDNYYTECQE 711
Cdd:TIGR00618 608 DMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQS 687
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 712 -------VREKIIALEKRYAEQKAKHEERLMRIEEQKLKLQEGQRIIQNALAAPNAWANDLVTLKNW------------- 771
Cdd:TIGR00618 688 ekeqltyWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTvlkarteahfnnn 767
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 772 -------LTEDKLPEISKFINTYELEEKRLNRALAKYEQKLSGKQRPDLTELREEKQALSESFSQAQKTVIELSNTRQQL 844
Cdd:TIGR00618 768 eevtaalQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEI 847
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 845 ETIVAKIEQTLETQGKAADKAREMTKLYNAIAGKTGDKLKLETFVVQHYLEKVLIYANQHFINQlSNNRYRFELAKESAN 924
Cdd:TIGR00618 848 THQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGDALIKFLHEITLYANVRLANQ-SEGRFHGRYADSHVN 926
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 925 KRHDHGLDISIYDNETGASRSSNTLSGGETFIAALSIALALSEVVQNSAqGVQIEALFVDEGFGSLDQETLQKAMTALEQ 1004
Cdd:TIGR00618 927 ARKYQGLALLVADAYTGSVRPSATLSGGETFLASLSLALALADLLSTSG-GTVLDSLFIDEGFGSLDEDSLDRAIGILDA 1005
|
1050 1060 1070
....*....|....*....|....*....|...
gi 1246783639 1005 IGE-NRLVGLISHVEEMKNSIAQQLRVEKVGDG 1036
Cdd:TIGR00618 1006 IREgSKMIGIISHVPEFRERIPHRILVKKTNAG 1038
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
1-170 |
1.54e-37 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 140.10 E-value: 1.54e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 1 MKPIYLEMNYFGPHAH-SEIDFRALDEAPLFLISGDTGAGKSTIFDAMTYALFDKTTGDREAREMRSQFAQPDQRTEVIF 79
Cdd:cd03279 1 MKPLKLELKNFGPFREeQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 80 YFEQGNFLYKVQRCPeqevfkkrgtgtkteksqaslaivdrvfgieqaslatkpvdvaseiygllNLSAEQFKKIILLPQ 159
Cdd:cd03279 81 TFQLGGKKYRVERSR--------------------------------------------------GLDYDQFTRIVLLPQ 110
|
170
....*....|.
gi 1246783639 160 NDFSRFLKSAT 170
Cdd:cd03279 111 GEFDRFLARPV 121
|
|
| ABC_sbcCD |
cd03279 |
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
943-1036 |
3.71e-37 |
|
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 138.94 E-value: 3.71e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 943 SRSSNTLSGGETFIAALSIALALSEVVQNSAqGVQIEALFVDEGFGSLDQETLQKAMTALEQI-GENRLVGLISHVEEMK 1021
Cdd:cd03279 118 ARPVSTLSGGETFLASLSLALALSEVLQNRG-GARLEALFIDEGFGTLDPEALEAVATALELIrTENRMVGVISHVEELK 196
|
90
....*....|....*
gi 1246783639 1022 NSIAQQLRVEKVGDG 1036
Cdd:cd03279 197 ERIPQRLEVIKTPGG 211
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
19-1033 |
3.23e-30 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 129.54 E-value: 3.23e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 19 IDFRALDEAP--LFLISGDTGAGKSTIFDAMTYALFDKTtgdreAREMRSQFAQPDQRTEvifyfeqgnflyKVQRCPEQ 96
Cdd:PRK10246 20 IDFTAEPFASngLFAITGPTGAGKTTLLDAICLALYHET-----PRLNNVSQSQNDLMTR------------DTAECLAE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 97 EVFKKRGTGTKTEKSQASLAivDRVFGIEQAS------------LATKPVDVASEIYGLLNLSAEQFKKIILLPQNDFSR 164
Cdd:PRK10246 83 VEFEVKGEAYRAFWSQNRAR--NQPDGNLQAPrvelarcadgkiLADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 165 FLKSATNEKEEILKKIFGTAIFTVFSEEVRNQYtknnQENATLDSILQSQYSS-SVWTEEEAKALEEC----PDKEKFDK 239
Cdd:PRK10246 161 FLNAKPKERAELLEELTGTEIYGQISAMVFEQH----KSARTELEKLQAQASGvALLTPEQVQSLTASlqvlTDEEKQLL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 240 ATEFLEQKQMQESKARDLAKIAQQQVETIDKAYEDALLLEREFLEA-EKTQKEYQ-----EKIAEQAAFYEQQKeayear 313
Cdd:PRK10246 237 TAQQQQQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAAlSLAQPARQlrphwERIQEQSAALAHTR------ 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 314 swaqqfkdilRDLEKVEKELEANQVREADYRSKAEQEQKilgEVKKREQDLDQKASEFEEKGKGIEELTRTITQAEQAEK 393
Cdd:PRK10246 311 ----------QQIEEVNTRLQSTMALRARIRHHAAKQSA---ELQAQQQSLNTWLAEHDRFRQWNNELAGWRAQFSQQTS 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 394 LIWQKKDLEKKIVHLQLKQSETDVPlkeaqvKLDQLQKEILDESILQEEKDALSRLKLDFHQQLSPLAEYLERLKQENQV 473
Cdd:PRK10246 378 DREQLRQWQQQLTHAEQKLNALPAI------TLTLTADEVAAALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLQVAIQN 451
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 474 AQKELNFAEENIAKMEQDFMLKQESYQEKRKL-RQSLMIAQLQKE---LEDGLPCKVCGATEHP----LSHVELDVSDDD 545
Cdd:PRK10246 452 VTQEQTQRNAALNEMRQRYKEKTQQLADVKTIcEQEARIKDLEAQraqLQAGQPCPLCGSTSHPaveaYQALEPGVNQSR 531
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 546 LKAAMQQVdeaqeAFAAAEERQEKAQSELEMAQKQ-ATEKAETLQEMEQKFDQVYSQFCQAhegsfpkvfscqeLNIIFQ 624
Cdd:PRK10246 532 LDALEKEV-----KKLGEEGAALRGQLDALTKQLQrDESEAQSLRQEEQALTQQWQAVCAS-------------LNITLQ 593
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 625 ARED----------------SYRQKSTAQKERSLEKEKLRVLVENLEAERQGLfqesdkvKAQLEIVAQSLAEFGQLQPS 688
Cdd:PRK10246 594 PQDDiqpwldaqeeherqlrLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQL-------LTALAGYALTLPQEDEEASW 666
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 689 QALKEQKVILRQEvdnYYTECQEVREKIIALE----------KRYAEQKAKHEERLMRIEEQKLKLQ------------E 746
Cdd:PRK10246 667 LATRQQEAQSWQQ---RQNELTALQNRIQQLTplletlpqsdDLPHSEETVALDNWRQVHEQCLSLHsqlqtlqqqdvlE 743
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 747 GQRIIQ------NALAApNAWANDLVTLKNWLTEDKLPEISKFINTYELEEKRLNRALAKYEQKLSG--KQRPDLTELRE 818
Cdd:PRK10246 744 AQRLQKaqaqfdTALQA-SVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQhqQHRPDGLDLTV 822
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 819 EKQALSESFSQAQKTVIELS--------------NTRQQLETIVAKIEQtletqgkAADKAREMTKLYNAIAGKTGDKLK 884
Cdd:PRK10246 823 TVEQIQQELAQLAQQLRENTtrqgeirqqlkqdaDNRQQQQALMQQIAQ-------ATQQVEDWGYLNSLIGSKEGDKFR 895
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 885 leTFVVQHYLEKVLIYANQhfinQLSNNRYRFELAKESANkrhdhGLDISIYDN-ETGASRSSNTLSGGETFIAALSIAL 963
Cdd:PRK10246 896 --KFAQGLTLDNLVWLANQ----QLTRLHGRYLLQRKASE-----ALELEVVDTwQADAVRDTRTLSGGESFLVSLALAL 964
|
1050 1060 1070 1080 1090 1100 1110
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1246783639 964 ALSEVVQNSAQgvqIEALFVDEGFGSLDQETLQKAMTALEQI-GENRLVGLISHVEEMKNSIAQQLRVEKV 1033
Cdd:PRK10246 965 ALSDLVSHKTR---IDSLFLDEGFGTLDSETLDTALDALDALnASGKTIGVISHVEAMKERIPVQIKVKKI 1032
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
2-165 |
4.06e-18 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 83.91 E-value: 4.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 2 KPIYLEMNYFGPHAHSE-IDFraldEAPLFLISGDTGAGKSTIFDAMTYALFDKTTGDreaREMRSQFA-QPDQRTEVIF 79
Cdd:COG0419 1 KLLRLRLENFRSYRDTEtIDF----DDGLNLIVGPNGAGKSTILEAIRYALYGKARSR---SKLRSDLInVGSEEASVEL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 80 YFEQGNFLYKVQRcpEQEVFKKRGTGTKTEKSQaslaIVDRVFGIEQASLATkpvDVASEIYGLLNLSAEQFKKIILLPQ 159
Cdd:COG0419 74 EFEHGGKRYRIER--RQGEFAEFLEAKPSERKE----ALKRLLGLEIYEELK---ERLKELEEALESALEELAELQKLKQ 144
|
....*.
gi 1246783639 160 NDFSRF 165
Cdd:COG0419 145 EILAQL 150
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
17-447 |
3.39e-14 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 76.59 E-value: 3.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 17 SEIDFralDEAPLFLISGDTGAGKSTIFDAMTYALFDKTTGDREAREMRSQFAQPDQRTEVifYFEQGNFLYKVQRCPEQ 96
Cdd:PHA02562 20 IEIQL---DKVKKTLITGKNGAGKSTMLEALTFALFGKPFRDIKKGQLINSINKKDLLVEL--WFEYGEKEYYIKRGIKP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 97 EVFKKRGTGTKTEKSQASlaivdrvfgieqaslatkpVDVASEIYGLLNLSAEQFKKIILLPQNDFSRFLKSATNEKEEI 176
Cdd:PHA02562 95 NVFEIYCNGKLLDESASS-------------------KDFQKYFEQMLGMNYKSFKQIVVLGTAGYVPFMQLSAPARRKL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 177 LKKIFGTAIFTVFSEEVRNQYTKNNQENATLD---SILQSQYSSSVWTEEEAKAL--EECPDKE-KFDKATEFLEQKQMQ 250
Cdd:PHA02562 156 VEDLLDISVLSEMDKLNKDKIRELNQQIQTLDmkiDHIQQQIKTYNKNIEEQRKKngENIARKQnKYDELVEEAKTIKAE 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 251 ESKARDlaKIAQQQVETIDkaYEDALLLEREFLEAEKTQKEYQEKIAEqaaFYEqqkEAYEARSWAQQFKDILRDLEKVe 330
Cdd:PHA02562 236 IEELTD--ELLNLVMDIED--PSAALNKLNTAAAKIKSKIEQFQKVIK---MYE---KGGVCPTCTQQISEGPDRITKI- 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 331 keleanqvreadyRSKAEQEQKILGEVKKREQDLDQKASEFEEKGKGIEELTRTITQAEQA-EKLIWQKKDLEKKIvhlq 409
Cdd:PHA02562 305 -------------KDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSlITLVDKAKKVKAAI---- 367
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1246783639 410 lKQSETDVPLKEAQVKL--DQLQKEILDESILQEEKDALS 447
Cdd:PHA02562 368 -EELQAEFVDNAEELAKlqDELDKIVKTKSELVKEKYHRG 406
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
948-1038 |
1.66e-12 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 67.63 E-value: 1.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 948 TLSGGETFIAALSIALALSEVVqnsaqGVQIEALFVDEGFGSLDQETLQKAmtaLEQI------GENRLVGLISHVEEMK 1021
Cdd:cd03240 115 RCSGGEKVLASLIIRLALAETF-----GSNCGILALDEPTTNLDEENIEES---LAEIieerksQKNFQLIVITHDEELV 186
|
90
....*....|....*..
gi 1246783639 1022 NSIAQQLRVEKVGDGRS 1038
Cdd:cd03240 187 DAADHIYRVEKDGRQKS 203
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
223-445 |
4.87e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.56 E-value: 4.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 223 EEAKALEECPDKEKFDKATEFLEQKQMQESKARDLAKIAQQQVETIDKAYEdalllEREFLEAEKTQKEYQEKIAEqaaf 302
Cdd:PTZ00121 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE-----EEKKMKAEEAKKAEEAKIKA---- 1622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 303 yEQQKEAYEARSWAQQFKDI----LRDLEKVEKELEANQVREADYRSKAEQEQKILGEVKKREQDLDQKASEF---EEKG 375
Cdd:PTZ00121 1623 -EELKKAEEEKKKVEQLKKKeaeeKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALkkeAEEA 1701
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1246783639 376 KGIEELTRTIT-QAEQAEKLiwQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEILDESILQEEKDA 445
Cdd:PTZ00121 1702 KKAEELKKKEAeEKKKAEEL--KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKA 1770
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
6-185 |
2.94e-11 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 63.67 E-value: 2.94e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 6 LEMNYFGPHAHSEIDFraldEAPLFLISGDTGAGKSTIFDAMTYALFDKTtgdreaREMRSQFAQPDQRTEVIFYFEQgn 85
Cdd:pfam13476 1 LTIENFRSFRDQTIDF----SKGLTLITGPNGSGKTTILDAIKLALYGKT------SRLKRKSGGGFVKGDIRIGLEG-- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 86 flyKVQRCPEQEVFKKRGTGTKTEKSQASLAIVDRVFGIEQASLATKPVDVASEIYGLLNLSAEQFKKIILLPQNDFSRF 165
Cdd:pfam13476 69 ---KGKAYVEITFENNDGRYTYAIERSRELSKKKGKTKKKEILEILEIDELQQFISELLKSDKIILPLLVFLGQEREEEF 145
|
170 180
....*....|....*....|
gi 1246783639 166 LKSATNEKEEILKKIFGTAI 185
Cdd:pfam13476 146 ERKEKKERLEELEKALEEKE 165
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
295-597 |
5.06e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 5.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 295 KIAEQAAFYEQQKEAYEARSWAQQFKDILRDLEKVEKELEANQVREADYRSKAEQEQKilgEVKKREQDLDQKASEFEEK 374
Cdd:COG1196 210 EKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEA---ELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 375 GKGIEELTRTITQAEQAEKLIWQK-KDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEILD-----ESILQEEKDALSR 448
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERrRELEERLEELEEELAELEEELEELEEELEELEEELEEaeeelEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 449 LKLDFHQQLSPLAEYLERLKQENQVAQKELNFA--EENIAKMEQDFMLKQESYQEKRKLRQSLMIAQLQKELEDGlpckv 526
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAaqLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE----- 441
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1246783639 527 cgatehpLSHVELDVSDDDLKAAMQQVDEAQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEMEQKFDQ 597
Cdd:COG1196 442 -------EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
222-520 |
1.11e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 1.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 222 EEEAKALEECPDKEKFDKATEFLEQKQMQESKARDLAKIAQQ--QVETIDKAYEDALLLEREFLEAEKTQK--EYQEKIA 297
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEakKADEAKKKAEEAKKAEEAKKKAEEAKKadEAKKKAE 1480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 298 EQAAFYEQQKEAYEARSWAQQFKDILRDLEKVEKELEANQVREADYRSKAEQEQKIlGEVKKREQ----DLDQKASEFE- 372
Cdd:PTZ00121 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA-DEAKKAEEkkkaDELKKAEELKk 1559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 373 -EKGKGIEELTRTITQAEQAEKLIWQKKDLEKKIVHLQLKQSETDVPLK--------EAQVKLDQLQKEildesilQEEK 443
Cdd:PTZ00121 1560 aEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKaeeakkaeEAKIKAEELKKA-------EEEK 1632
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1246783639 444 DALSRLKLDFHQQLSPlAEYLERLKQENQV-AQKELNFAEENIAKMEQdfmLKQESYQEKRKLRQSLMIAQLQKELED 520
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKK-AEELKKAEEENKIkAAEEAKKAEEDKKKAEE---AKKAEEDEKKAAEALKKEAEEAKKAEE 1706
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
220-854 |
5.24e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 5.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 220 WTEEEAKALEEcpdkeKFDKATEFLEQKQMQESKARDLAKIAQQQVETIDKAYEDALLLEREfLEAEKTQKEYQEKIA-E 298
Cdd:COG1196 236 ELEAELEELEA-----ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE-LLAELARLEQDIARLeE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 299 QAAFYEQQKEAYEAR--SWAQQFKDILRDLEKVEKELEANQVREADYRSKAEQEQKILGEVKKREQDLDQKASEFEEkgK 376
Cdd:COG1196 310 RRRELEERLEELEEElaELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE--E 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 377 GIEELTRTITQAEQAEKLIWQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEILDESILQEEKDALSRLKLDFHQQ 456
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 457 LSPLAEYLERLKQENQVAQKELNFAEENIAKMEQDFMLKQESYQEKRKLRQSLMIAQLqKELEDGLPCKVCGATEHPLSH 536
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA-VAVLIGVEAAYEAALEAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 537 VELDVSDDDLKAAMQQVDEAQEAFAAAEErqekAQSELEMAQKQATEKAETLQEMEQKFDQVYSQFCQAHEGSFPKVFSC 616
Cdd:COG1196 547 ALQNIVVEDDEVAAAAIEYLKAAKAGRAT----FLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 617 QELNIIfQAREDSYRQKSTAQKERSLEKEKLRVLVENLEAERQGLFQESdkvKAQLEIVAQSLAEFGQLQPSQALKEQKV 696
Cdd:COG1196 623 LGRTLV-AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL---LAALLEAEAELEELAERLAEEELELEEA 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 697 ILRQEvdnyytECQEVREKIIALEKRYAEQKAKHEERLMRIEEQKLKLQEGQRIIQNALAAPNAwandlvtlknwLTEDK 776
Cdd:COG1196 699 LLAEE------EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL-----------PEPPD 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 777 LPEISKFINTYELEEKRLN----RALAKYEqklsgkqrpdltELREEKQALSEsfsqaQKTviELSNTRQQLETIVAKIE 852
Cdd:COG1196 762 LEELERELERLEREIEALGpvnlLAIEEYE------------ELEERYDFLSE-----QRE--DLEEARETLEEAIEEID 822
|
..
gi 1246783639 853 QT 854
Cdd:COG1196 823 RE 824
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
159-844 |
9.84e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 9.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 159 QNDFSRFLKSATNEKEEILKKIFGTAIFTVFS---EEVRNQYTKNNQENATldSILQSQYSSSVWTEEEAKALEECPDKE 235
Cdd:PTZ00121 1078 DFDFDAKEDNRADEATEEAFGKAEEAKKTETGkaeEARKAEEAKKKAEDAR--KAEEARKAEDARKAEEARKAEDAKRVE 1155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 236 KFDKATEfleQKQMQESKARDLAKIAQQQVETIDKAYEDALLLEREFLEAEKTQKEYQEKIAEQAAFYEQQKEAYEARSW 315
Cdd:PTZ00121 1156 IARKAED---ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKA 1232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 316 AQQFKDI--------LRDLEKVEKELEANQVREADYRS--KAEQEQKIlGEVKKREQDLDQKASEFEEKGKGIEELTRTI 385
Cdd:PTZ00121 1233 EEAKKDAeeakkaeeERNNEEIRKFEEARMAHFARRQAaiKAEEARKA-DELKKAEEKKKADEAKKAEEKKKADEAKKKA 1311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 386 TQAEQAEKLIWQKKDLEKKIVHLQLKQSET----DVPLKEAQVKLDQL----QKEILDESILQEEKDALSRLKLDFHQQL 457
Cdd:PTZ00121 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAkkaaEAAKAEAEAAADEAeaaeEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 458 SplAEYLERLKQENQVAQKELNFAEENIAKMEQdfmLKQESyQEKRKLRQSLMIAQLQKELEDG-LPCKVCGATEHPLSH 536
Cdd:PTZ00121 1392 K--ADEAKKKAEEDKKKADELKKAAAAKKKADE---AKKKA-EEKKKADEAKKKAEEAKKADEAkKKAEEAKKAEEAKKK 1465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 537 VELDVSDDDLKAAMQQVDEAQEAFAAAEERQEKAQS--ELEMAQKQATE--------KAETLQEMEQKfdQVYSQFCQAH 606
Cdd:PTZ00121 1466 AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEakKAAEAKKKADEakkaeeakKADEAKKAEEA--KKADEAKKAE 1543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 607 E-GSFPKVFSCQELNIIFQAREDSYRQKSTAQKERSLEK-EKLRVLVENLEAERQGLFQESDKVKA-QLEIVAQSLAEFG 683
Cdd:PTZ00121 1544 EkKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKaEEAKKAEEARIEEVMKLYEEEKKMKAeEAKKAEEAKIKAE 1623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 684 QLQPSQALKEQKVILRQEVDNYYTECQEVREKIIALEKRYAEQKAKHEERLMRIEEQKlKLQEGQRIIQNALAAPNAWAN 763
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK-KAEEDEKKAAEALKKEAEEAK 1702
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 764 DLVTLKNWLTED--KLPEISKfintyELEEKRLNRALAKYEQKLSGKQRPDLTELREEKQALSESFSQAQKTVIELSNTR 841
Cdd:PTZ00121 1703 KAEELKKKEAEEkkKAEELKK-----AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
|
...
gi 1246783639 842 QQL 844
Cdd:PTZ00121 1778 EAV 1780
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
6-124 |
1.66e-09 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 58.77 E-value: 1.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 6 LEMNYFGP-HAHSEIDFRAldeaPLFLISGDTGAGKSTIFDAMTYALF-DKTTGDREAREMRSQFAQPDQRTEVIFYFE- 82
Cdd:cd03240 4 LSIRNIRSfHERSEIEFFS----PLTLIVGQNGAGKTTIIEALKYALTgELPPNSKGGAHDPKLIREGEVRAQVKLAFEn 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 83 -QGNfLYKVQR----------CPEQEVFK----KRGTGTKTEKSQASLAI---VDRVFGI 124
Cdd:cd03240 80 aNGK-KYTITRslailenvifCHQGESNWplldMRGRCSGGEKVLASLIIrlaLAETFGS 138
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
190-898 |
3.10e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 3.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 190 SEEVRNQYTKNNQENATLDSILQSQYSSSVWTEEEAKALEECPDKEKFDKATEFLEQKQMQESKardlakiaqQQVETID 269
Cdd:PTZ00121 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAK---------KKAEEAK 1315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 270 KAYEDALLLEREFLEAEKTQKEYQEKiaeqaafyeqQKEAYEARSWAQQFKDilrDLEKVEKELEANQVREADYRSKAEQ 349
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEA----------KKAAEAAKAEAEAAAD---EAEAAEEKAEAAEKKKEEAKKKADA 1382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 350 EQKILGEVKKREQdLDQKAsefEEKGKGIEELTRTITQAEQAEKLiwQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQL 429
Cdd:PTZ00121 1383 AKKKAEEKKKADE-AKKKA---EEDKKKADELKKAAAAKKKADEA--KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 430 QKEildESILQEEKDALSRLKLDFHQQLSPLAEYLERLKQENQVAQKELNFAEEniAKMEQDFMLKQESYQEKRKLRQsl 509
Cdd:PTZ00121 1457 KKA---EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE--AKKKADEAKKAEEAKKADEAKK-- 1529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 510 miAQLQKELEdglpckvcgatehplshvELDVSDDDLKAamQQVDEAQEAFAAAEERQEKAQSELEMAQKQATEKAETLQ 589
Cdd:PTZ00121 1530 --AEEAKKAD------------------EAKKAEEKKKA--DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 590 EMEQKFDQVYSQFCQAHegsfpKVFSCQELNIIFQAREDSYRQKSTAQKERSLEKEKLRVLVENLEAERQGLFQESDKVK 669
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEE-----KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 670 AQlEIVAQSLAEFGQLQPSQALKEQKVILRQEVDNYYTECQEVRE--KIIALEKRYAEQ-KAKHEERLMRIEEQKLKLQE 746
Cdd:PTZ00121 1663 AA-EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEElkKKEAEEKKKAEElKKAEEENKIKAEEAKKEAEE 1741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 747 GQRIIQNALAAPNAwandlvtlKNWLTEDKLPEISKFINTYELEEKRLNRALAKYEQKLSGKQRPDLTELREEKQALSES 826
Cdd:PTZ00121 1742 DKKKAEEAKKDEEE--------KKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEG 1813
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1246783639 827 fsqAQKTVIELSNTRQQLETIVAKIEQTLETQGKAADKAREMTKLYNAIAGKTGDK---LKLETFVVQHYLEKVL 898
Cdd:PTZ00121 1814 ---GKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKeadFNKEKDLKEDDEEEIE 1885
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
291-1040 |
5.96e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 5.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 291 EYQEKIAEQAAFYEQQKEAYEarswaqQFKDILRDLEKVEKELEANQVREADYRSKAEQEQKILGEVKKREQDLDQKASE 370
Cdd:PRK03918 145 ESREKVVRQILGLDDYENAYK------NLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPE 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 371 FEEKGKGIEELTRTITQ-AEQAEKLIWQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEILDESILQEEKDA---L 446
Cdd:PRK03918 219 LREELEKLEKEVKELEElKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyikL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 447 SRLKLDFHQQLSPLAEYLERLKQENQVAQKELNFAEENIAKMEQDFMLKQESYQEKRKLRQSL----MIAQLQKELED-- 520
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHelyeEAKAKKEELERlk 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 521 -GLPCKVCGATEHPLSHV-----ELDVSDDDLKAAMQQVDEAQEAFAAAEERQEKAQSELEMAQKQATE--KAETLQEME 592
Cdd:PRK03918 379 kRLTGLTPEKLEKELEELekakeEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEehRKELLEEYT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 593 QKFDQVYSQFCQAHEGSFPKVFSCQELNIIFQAREDSYRQKSTAQKERSLEKEKLRVLVENLEA---ERQGLFQESDKVK 669
Cdd:PRK03918 459 AELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKkaeEYEKLKEKLIKLK 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 670 AQLEIVAQSLAEFGQLQPSQALKEQKV---------ILRQEVDNYYTECQEVREKIIALEKRYAEQ-KAKHEERLMRIEE 739
Cdd:PRK03918 539 GEIKSLKKELEKLEELKKKLAELEKKLdeleeelaeLLKELEELGFESVEELEERLKELEPFYNEYlELKDAEKELEREE 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 740 QKLKLQEGQriiqnalaapnawandlvtlknwlTEDKLPEISKFINTYELEEKRLNRALAKYEQKlsgkqrpDLTELREE 819
Cdd:PRK03918 619 KELKKLEEE------------------------LDKAFEELAETEKRLEELRKELEELEKKYSEE-------EYEELREE 667
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 820 KQALSESFSQAQKTVIELSNTRQQLETIVAKIEQTLETQGKAADKAREMTKLYNAIAGKTGDKLKLETFVVQHYLEKVLI 899
Cdd:PRK03918 668 YLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVGE 747
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 900 YANQHFiNQLSNNRYRFELAKESANKrhdhgldISIYDNETGASRSSNTLSGGETFIAALSIALALSEVVQNsaqgvQIE 979
Cdd:PRK03918 748 IASEIF-EELTEGKYSGVRVKAEENK-------VKLFVVYQGKERPLTFLSGGERIALGLAFRLALSLYLAG-----NIP 814
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1246783639 980 ALFVDEGFGSLDQETLQKamtaLEQIGENRL-----VGLISHVEEMKNSIAQQLRVEKVGdGRSQV 1040
Cdd:PRK03918 815 LLILDEPTPFLDEERRRK----LVDIMERYLrkipqVIIVSHDEELKDAADYVIRVSLEG-GVSKV 875
|
|
| SbcC_Walker_B |
pfam13558 |
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from ... |
912-1004 |
2.20e-08 |
|
SbcC/RAD50-like, Walker B motif; This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homolog SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is separated of the Walker A domain by a long coiled-coil domain and forms the nucleotide-binding domain (NBD) when the coiled coils fold back on themselves and bring together Walker A and B domains. Two RAD50-NBDs forms heterotetramers with a Mre11 nuclease dimer that assemble as catalytic head module that binds and cleaves DNA in an ATP-dependent reaction. Through secondary structural analysis, it has been suggested that there is a wide structural conservation in the Rad50/SMC protein family as seen in structural similarities between RAD50's hook and ABC-ATPase MukB's elbow region.
Pssm-ID: 463921 [Multi-domain] Cd Length: 90 Bit Score: 52.62 E-value: 2.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 912 NRYRFELAKESANkrhdhgldisiyDNETGASRSSNTLSGGET-FIAALSIALALSEVVQ-NSAQGVQIEALFVDEGFGS 989
Cdd:pfam13558 8 NWLSFEVEVRDED------------GSEVETYRRSGGLSGGEKqLLAYLPLAAALAAQYGsAEGRPPAPRLVFLDEAFAK 75
|
90
....*....|....*
gi 1246783639 990 LDQETLQKAMTALEQ 1004
Cdd:pfam13558 76 LDEENIRTALELLRA 90
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
244-849 |
2.75e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 2.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 244 LEQKQMQESKARDLAKIAQQQVETIDKAYEDallLEREFLEAEKTQKEYQEK-----------------IAEQAAFYEQQ 306
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEE---LRLEVSELEEEIEELQKElyalaneisrleqqkqiLRERLANLERQ 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 307 KEAYEARS--WAQQFKDILRDLEKVEKELEANQVREADYRSKAEQEQKILGEVKKREQDLDQK----ASEFEEKGKGIEE 380
Cdd:TIGR02168 318 LEELEAQLeeLESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQletlRSKVAQLELQIAS 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 381 LTRTITQAE--------QAEKLIWQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEILDE--SILQEEKDALSRLK 450
Cdd:TIGR02168 398 LNNEIERLEarlerledRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEalEELREELEEAEQAL 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 451 LDF---HQQLSPLAEYLERLKQENQVAQKELNFAEENIAKMEQDFMLKQESYQEKRKLRQSLMIA--------------- 512
Cdd:TIGR02168 478 DAAereLAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAlggrlqavvvenlna 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 513 -----QLQKELEDG----LPCKVCGATEHPLSH--------------VELDVSDDDLKAAMQ------------------ 551
Cdd:TIGR02168 558 akkaiAFLKQNELGrvtfLPLDSIKGTEIQGNDreilkniegflgvaKDLVKFDPKLRKALSyllggvlvvddldnalel 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 552 --------------------------QVDEAQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEMEQKFDQVYSQFCQA 605
Cdd:TIGR02168 638 akklrpgyrivtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 606 HEGSFPKVFSCQELNIIFQAREDSYRQKSTAQKERSLEKEKLRVLVENLEAERQGLFQESDKVKAQLEIVAQSLAEFgqL 685
Cdd:TIGR02168 718 RKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL--K 795
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 686 QPSQALKEQKVILRQEVDNYYTECQEVREKIIALEKRYAEQkakhEERLMRIEEQKLKLQEgqriiqnALAAPNAWANDL 765
Cdd:TIGR02168 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT----ERRLEDLEEQIEELSE-------DIESLAAEIEEL 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 766 VTLKNWLtEDKLPEISKFINTYELEEKRLNRALAKYEQKLSGKQRpDLTELREEKQALSESFSQAQKTVIELSNTRQQLE 845
Cdd:TIGR02168 865 EELIEEL-ESELEALLNERASLEEALALLRSELEELSEELRELES-KRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
....
gi 1246783639 846 TIVA 849
Cdd:TIGR02168 943 ERLS 946
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
190-496 |
2.12e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 2.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 190 SEEVRNQYTKNNQENATLDSILQSQYSSSVWTEEEAKA-LEECPDKEKFDKATEFLEQKQMQESKARDLAKIAQQQVETi 268
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIkAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI- 1661
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 269 dKAYEDALLLEREFLEAEKTQKEYQEKIAEQAAFYEQQKEAYEARSWAQQFKDILRDLEKVEKELEANQVREADYRSKAE 348
Cdd:PTZ00121 1662 -KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 349 QEQKILGEVKKREQD---LDQKASEFEEKGKGIEELTRTITQAEQAEKLIWQKKDLEKKI-------VHLQLKQSETDVP 418
Cdd:PTZ00121 1741 EDKKKAEEAKKDEEEkkkIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIkdifdnfANIIEGGKEGNLV 1820
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1246783639 419 LKEAQVKLDQLQKEILDESILQ-EEKDALSRLKLDFHQQLSplaeyleRLKQENQVAQKELNFAEENIAKMEQDFMLKQ 496
Cdd:PTZ00121 1821 INDSKEMEDSAIKEVADSKNMQlEEADAFEKHKFNKNNENG-------EDGNKEADFNKEKDLKEDDEEEIEEADEIEK 1892
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
624-867 |
3.15e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 3.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 624 QAREDSYRQKSTAQKERSLEKEKLRVLVENLEAE----RQGLFQESDKVKAQLEIVAQSLAEFGQLQPSQALKEQKVI-L 698
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAEleelRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRReL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 699 RQEVDNYYTECQEVREKIIALEKRYAEQKAKHEERLMRIEEQKLKLQEGQRIIQNALAAPNAWANDLVTLKNWLTE--DK 776
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEalRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 777 LPEISKFINTYELEEKRLNRALAKYEQKLSGKQRpDLTELREEKQALSESFSQAQKTVIELSNTRQQLETIVAKIEQTLE 856
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEE-ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250
....*....|.
gi 1246783639 857 TQGKAADKARE 867
Cdd:COG1196 474 LLEAALAELLE 484
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
313-1028 |
4.17e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.00 E-value: 4.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 313 RSWAQQFKDILRDLEKVEKELEANQVREADYRskaeqeqkilgEVKKREQDLDQKASEFEEKGKGIEELTRTITQAEQAE 392
Cdd:COG4717 60 KPQGRKPELNLKELKELEEELKEAEEKEEEYA-----------ELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 393 KLIWQKKDLEKKIVHL--QLKQSETDV-PLKEAQVKLDQLQKEIldESILQEEKDALSRLKLDFHQQLSPLAEYLERLKQ 469
Cdd:COG4717 129 PLYQELEALEAELAELpeRLEELEERLeELRELEEELEELEAEL--AELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 470 ENQVAQKELNFAEENIAKMEQdfmlkqesyqEKRKLRQSLMIAQLQKELEDGLPCKVCGATEHPLSHVELDVSDDDLK-A 548
Cdd:COG4717 207 RLAELEEELEEAQEELEELEE----------ELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 549 AMQQVDEAQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEMEQKfdqvysqfcqahegSFPKVFSCQELNIIFQARED 628
Cdd:COG4717 277 GVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE--------------ELLAALGLPPDLSPEELLEL 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 629 SYRQKSTAQKERSLEKEKLRVLVENLEAERQGLFQESDkvkaqleivAQSLAEFGQLQpsqalkeqkvilrqevdNYYTE 708
Cdd:COG4717 343 LDRIEELQELLREAEELEEELQLEELEQEIAALLAEAG---------VEDEEELRAAL-----------------EQAEE 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 709 CQEVREKIIALEKRYAEQKAKHEERLMRIEEQKLklqegqriiqnalaapnawandlvtlknwltedklpeiskfintyE 788
Cdd:COG4717 397 YQELKEELEELEEQLEELLGELEELLEALDEEEL---------------------------------------------E 431
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 789 LEEKRLNRALAKYEQKLsgkqrpdlTELREEKQALSESFSQAQKTViELSNTRQQLETIVAKIEQtLETQGKAADKAREm 868
Cdd:COG4717 432 EELEELEEELEELEEEL--------EELREELAELEAELEQLEEDG-ELAELLQELEELKAELRE-LAEEWAALKLALE- 500
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 869 tklynaIAGKTGDKLKLEtfvvqhYLEKVLIYANQHFiNQLSNNRYRfelakesaNKRHDHGLDISIyDNETGASRSSNT 948
Cdd:COG4717 501 ------LLEEAREEYREE------RLPPVLERASEYF-SRLTDGRYR--------LIRIDEDLSLKV-DTEDGRTRPVEE 558
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 949 LSGGETFIAALSIALALSEVVQNsaqgvQIEALFVDEGFGSLDQETLQKAMTALEQIGENRLVGLISHVEEMKNSIAQQL 1028
Cdd:COG4717 559 LSRGTREQLYLALRLALAELLAG-----EPLPLILDDAFVNFDDERLRAALELLAELAKGRQVIYFTCHEELVELFQEEG 633
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
32-520 |
6.54e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 6.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 32 ISGDTGAGKSTIFDAMTYALfdkttGDREAREMRSqfaqpDQRTEVIFyfeQGNFLYKVQRCPEQEVFKKRGtgtktEKS 111
Cdd:TIGR02169 28 ISGPNGSGKSNIGDAILFAL-----GLSSSKAMRA-----ERLSDLIS---NGKNGQSGNEAYVTVTFKNDD-----GKF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 112 QASLAIVDRVFGIEQASLAT-----KPVDVaSEIYGLLNLSAEQFKKIILLPQNDFSRFLKSATNEKEEILKKIFGTAIF 186
Cdd:TIGR02169 90 PDELEVVRRLKVTDDGKYSYyylngQRVRL-SEIHDFLAAAGIYPEGYNVVLQGDVTDFISMSPVERRKIIDEIAGVAEF 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 187 TVFSEEVRNQYTKNNQENATLDSILQSqysssvwTEEEAKALEEcpDKEKFDKATEFLEQKQMQESKARDLAK-IAQQQV 265
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDE-------KRQQLERLRR--EREKAERYQALLKEKREYEGYELLKEKeALERQK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 266 ETIDKAYEDallLEREFLEAEKTQKEYQEKIAEQAAFYEQQKEAYEARSWAQQFKdILRDLEKVEKELEANQVREADYRS 345
Cdd:TIGR02169 240 EAIERQLAS---LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR-VKEKIGELEAEIASLERSIAEKER 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 346 KAEQEQKilgEVKKREQDLDQKASEFEEKGKGIEELTRTITQ-AEQAEKLIWQKKDLEKKIVHLQLKQSETDVPLKEAQV 424
Cdd:TIGR02169 316 ELEDAEE---RLAKLEAEIDKLLAEIEELEREIEEERKRRDKlTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 425 KLDQLQKEILDesiLQEEKDALSRLKLDFHQQLSPLAEYLERLKQENQVAQKELNFAEENIAKMEQDFM--LKQESYQEK 502
Cdd:TIGR02169 393 KLEKLKREINE---LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEqlAADLSKYEQ 469
|
490
....*....|....*...
gi 1246783639 503 RKLRQSLMIAQLQKELED 520
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSK 487
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
217-491 |
6.89e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 6.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 217 SSVWTEEEAKALEECPDKEKFDKATEFLEQK----QMQESKARDLAKIAQQQVETIDKAYEDALLLEREFLEAEKTQKEY 292
Cdd:TIGR02169 666 ILFSRSEPAELQRLRERLEGLKRELSSLQSElrriENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 293 QEKIAEQAAFYEQQKEAYEARSWAQQfkdilRDLEKVEKELEANQVREAdyRSKAEQEQKILGEVKKREQDLDQKASEFE 372
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEARIEELE-----EDLHKLEEALNDLEARLS--HSRIPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 373 EKGKGI---EELTRTITQAEQAEKLIW--QKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEIL----DESILQEEK 443
Cdd:TIGR02169 819 QKLNRLtleKEYLEKEIQELQEQRIDLkeQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGdlkkERDELEAQL 898
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1246783639 444 DALSRLKLDFHQQLSPLAEYLERLKQENQVAQKELNFAEENIAKMEQD 491
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
11-780 |
8.09e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 53.37 E-value: 8.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 11 FGPHAHSEIDFraldEAPLFLISGDTGAGKSTIFDAMTYALFdkttGDREAREMRSQFAQPDQRTEVIFYFEQGNFLYKV 90
Cdd:PRK01156 11 FLSHDDSEIEF----DTGINIITGKNGAGKSSIVDAIRFALF----TDKRTEKIEDMIKKGKNNLEVELEFRIGGHVYQI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 91 QRCpeqevFKKRGTGTKTEksqaSLAIVDRVFGIEQASLATKPVDvaseiYGLLNLSAEQFKKIILLPQNDFSRFLKSAT 170
Cdd:PRK01156 83 RRS-----IERRGKGSRRE----AYIKKDGSIIAEGFDDTTKYIE-----KNILGISKDVFLNSIFVGQGEMDSLISGDP 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 171 NEKEEILKKIFGTAIFTVFSEEVRNQYTKNNQENATLDSILQSQYSSSVWTEEEAKALEECPDKEK-FDKATEFLEQKQM 249
Cdd:PRK01156 149 AQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSiTLKEIERLSIEYN 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 250 QESKARDLAKIAQQQVETIDkayEDALLLEREFLEAEKTQKEYQEKIAEQAAFYEQQKE-----AYEARSWAQQF---KD 321
Cdd:PRK01156 229 NAMDDYNNLKSALNELSSLE---DMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKiindpVYKNRNYINDYfkyKN 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 322 ILRDLEKVEKELEANQVREADYRSKAEQEQKILGE---VKKREQDLDQKASEFEEKGKGIEELTRTITQA----EQAEKL 394
Cdd:PRK01156 306 DIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDyikKKSRYDDLNNQILELEGYEMDYNSYLKSIESLkkkiEEYSKN 385
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 395 IWQKKDLEKKIVHLQ-LKQSETDVPLKEAQVKLDQLQKEIldeSILQEEKDALSRLKLDFHQQLSPLA------------ 461
Cdd:PRK01156 386 IERMSAFISEILKIQeIDPDAIKKELNEINVKLQDISSKV---SSLNQRIRALRENLDELSRNMEMLNgqsvcpvcgttl 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 462 --EYLERLKQEnqvAQKELNFAEENIAKMEQDF---------MLKQESYQEKRKLRQSLMIAQLQKELEDGLPCKVCGAT 530
Cdd:PRK01156 463 geEKSNHIINH---YNEKKSRLEEKIREIEIEVkdidekivdLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKIN 539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 531 EHPLSHVELDVSDDDLKaAMQQVDEAQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEMEQKFDQVysqfcqahEGSF 610
Cdd:PRK01156 540 ELKDKHDKYEEIKNRYK-SLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEI--------EIGF 610
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 611 PKVFSCQELNIIFQARE-DSYRQKSTAQKERSLEKEKLRVLVENLEAErqglfqesdkvkaqleivaqsLAEFGQLQPSQ 689
Cdd:PRK01156 611 PDDKSYIDKSIREIENEaNNLNNKYNEIQENKILIEKLRGKIDNYKKQ---------------------IAEIDSIIPDL 669
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 690 alKEQKVILRQEVDNYytecQEVREKIIALEKRYAEQKAKHEERLMRIEEQKLKLQEGQRIIQNALAAPNAwANDLVTLK 769
Cdd:PRK01156 670 --KEITSRINDIEDNL----KKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKA-IGDLKRLR 742
|
810
....*....|.
gi 1246783639 770 NWLTEDKLPEI 780
Cdd:PRK01156 743 EAFDKSGVPAM 753
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
372-721 |
1.15e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 372 EEKGKGIEELTRtitQAEQAEKLIWQKKDLEKKIVHLQLKQsetdvpLKEAQVKLDQLQKEILDesiLQEEKDALSRLKL 451
Cdd:TIGR02168 196 NELERQLKSLER---QAEKAERYKELKAELRELELALLVLR------LEELREELEELQEELKE---AEEELEELTAELQ 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 452 DFHQQLSPLAEYLERLKQENQVAQKELNFAEENIAKMEqdfmlkqesyQEKRKLRQSLmiAQLQKELEDGlpckvcgate 531
Cdd:TIGR02168 264 ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE----------QQKQILRERL--ANLERQLEEL---------- 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 532 hplshveldvsDDDLKAAMQQVDEAQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEMEQKFDQVYSQFCQAHEGSFP 611
Cdd:TIGR02168 322 -----------EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 612 KVFSCQELNIIFQAREDsyRQKSTAQKERSLEKEKLRVLVENLEAERQGLFQESDKVKAQLEIVAQSLAEFGQLQPSqaL 691
Cdd:TIGR02168 391 LELQIASLNNEIERLEA--RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE--L 466
|
330 340 350
....*....|....*....|....*....|
gi 1246783639 692 KEQKVILRQEVDNYYTECQEVREKIIALEK 721
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLER 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
316-602 |
2.28e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 2.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 316 AQQFKDILRDLEKVEKELEANQVREAD---------YRSKAEQEQKILGEVKKREQDLDQKASEFEEKGKGIEELTRTI- 385
Cdd:TIGR02168 212 AERYKELKAELRELELALLVLRLEELReeleelqeeLKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELy 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 386 TQAEQAEKLIWQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEILDesiLQEEKDALSRLKLDFHQQLSPLAEYLE 465
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE---LEEKLEELKEELESLEAELEELEAELE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 466 RLKQENQVAQKELNFAEENIAKMEQDFML--KQESYQEKRKLRQSLMIAQLQKELEDglpckvcgatehplshVELDVSD 543
Cdd:TIGR02168 369 ELESRLEELEEQLETLRSKVAQLELQIASlnNEIERLEARLERLEDRRERLQQEIEE----------------LLKKLEE 432
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1246783639 544 DDLKAAMQQVDEAQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEMEQKFDQVYSQF 602
Cdd:TIGR02168 433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
293-867 |
3.02e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 3.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 293 QEKIAEQAAFYEQQKEAYEARSWAQQFKDILRDLEKVEKELEANQVREADYRSKAEQEQKILGEVKKREQDLDQKA---- 368
Cdd:TIGR02168 208 QAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIeelq 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 369 SEFEEKGKGIEELTRTIT-QAEQAEKLIWQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEILDESILQEEKDALS 447
Cdd:TIGR02168 288 KELYALANEISRLEQQKQiLRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 448 RlklDFHQQLSPLAEYLERLKQEnqVAQKELnfaEENIAKMEQDFMLKQESYQEKRKLRQSLMIAQLQKELEDGLPCKVc 527
Cdd:TIGR02168 368 E---ELESRLEELEEQLETLRSK--VAQLEL---QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL- 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 528 gATEHPLSHVELDVSDDDLKAAMQQVDEAQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEMEQKFDQVYSQFCQAHE 607
Cdd:TIGR02168 439 -QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 608 --GSFPKV---FSCQE-------------LNIIFQAREDSYRQKSTAQKERSLEKEKLRVLVENLEAERQGLFQES---- 665
Cdd:TIGR02168 518 lsGILGVLselISVDEgyeaaieaalggrLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREIlkni 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 666 ----------DKVKAQLEIVAQSLaeFGQLQPSQALK---EQKVILRQEVDNYYTECQEVREK-IIALEKRYAEQKAKHE 731
Cdd:TIGR02168 598 egflgvakdlVKFDPKLRKALSYL--LGGVLVVDDLDnalELAKKLRPGYRIVTLDGDLVRPGgVITGGSAKTNSSILER 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 732 ERLMRIEEQKLKLQEGQriIQNALAAPNAWANDLVTLKNWLTE--DKLPEISKFINTYELEEKRLNRALAKYEQKLSGKQ 809
Cdd:TIGR02168 676 RREIEELEEKIEELEEK--IAELEKALAELRKELEELEEELEQlrKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1246783639 810 RpDLTELREEKQALSESFSQAQKTVIELSNTRQQLETIVAKIEQTLETQGKAADKARE 867
Cdd:TIGR02168 754 K-ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
261-512 |
4.36e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.07 E-value: 4.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 261 AQQQVETIDKAYEDALLLEREFLEAEKTQKEYQEKIAE-QAAFYEQQKEAYEARSWAQ---QFKDILRDLEKVEKELEAN 336
Cdd:PRK11281 68 TLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAlKDDNDEETRETLSTLSLRQlesRLAQTLDQLQNAQNDLAEY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 337 QVREADYRSKAEQEQKILGEVKKREQDLDQKASEFEEKGKGIEELTRTITQAEQA---EKLIWQKKDLEKKIVHLQLKQS 413
Cdd:PRK11281 148 NSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQAllnAQNDLQRKSLEGNTQLQDLLQK 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 414 ETDvplkEAQVKLDQLQKEILDesiLQEekdALSRlkldfhqqlsplaeylERLKQ-ENQVAQKElnfAEENIAKMEQDF 492
Cdd:PRK11281 228 QRD----YLTARIQRLEHQLQL---LQE---AINS----------------KRLTLsEKTVQEAQ---SQDEAARIQANP 278
|
250 260
....*....|....*....|
gi 1246783639 493 MLKQESyQEKRKLRQSLMIA 512
Cdd:PRK11281 279 LVAQEL-EINLQLSQRLLKA 297
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
233-900 |
5.06e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 5.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 233 DKEKFDKATEFLEQKQMQESKARDLAKIAQQQVETIDKAYEDALLLEREFLEAEKTQKEYQEKIAEQAAFYEQQKEAYEA 312
Cdd:pfam02463 248 DEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 313 RSWAQQFKDILRdLEKVEKELEANqvREADYRSKAEQEQKILGEVKKREQDLDQKASEFEEKGKGIEELTRTITQAEQAE 392
Cdd:pfam02463 328 KELKKEKEEIEE-LEKELKELEIK--REAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 393 KLIWQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEILDESILQEEKDALSRLKLdfhqQLSPLAEYLERLKQENQ 472
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKD----ELELKKSEDLLKETQLV 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 473 VAQKELNFAEENIAKMEQDFMLKQESYQEKRKLRQSLMIAQLQKELEDGLPCKVCGATEHPLSHVELDVSDDDLKAAMQQ 552
Cdd:pfam02463 481 KLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEV 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 553 VDEAQEAFAAAEERQEKAQSELEMAQKQATEKAEtlqemeqkfdqvysqfcqAHEGSFPKVFSCQELNIIFQAREDSYRQ 632
Cdd:pfam02463 561 EERQKLVRALTELPLGARKLRLLIPKLKLPLKSI------------------AVLEIDPILNLAQLDKATLEADEDDKRA 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 633 KSTAQKERSLEKEKLRVLVENLEAERQGLFQESDKVKAQLEIVAQSLAEFGQLQPSQALKEqkvILRQEVDNYYTECQEV 712
Cdd:pfam02463 623 KVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQE---KAESELAKEEILRRQL 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 713 REKIIALEKRYAEQKAKHEERLMRIEEQKLKLQEGQRIIQNALAAPNAWANDLVTLKNWLTEDKLPEISKFINTYELEEK 792
Cdd:pfam02463 700 EIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 793 RLNRALAKYEQKLSGKQRPDLTELREEKQALSESFSQAQKTVIELSNTRQQLETIVAKIEQTLETQGKAADKAREMTKLY 872
Cdd:pfam02463 780 REKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERL 859
|
650 660
....*....|....*....|....*...
gi 1246783639 873 NAIAGKTGDKLKLETFVVQHYLEKVLIY 900
Cdd:pfam02463 860 EEEITKEELLQELLLKEEELEEQKLKDE 887
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
949-1036 |
7.47e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 47.35 E-value: 7.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 949 LSGGETFIAALSIALALSEVVQNSaqgvqieALFVDEGFGSLDQETLQKAMTAL-EQIGENRLVGLISHVEEMKNSIAQQ 1027
Cdd:cd03227 78 LSGGEKELSALALILALASLKPRP-------LYILDEIDRGLDPRDGQALAEAIlEHLVKGAQVIVITHLPELAELADKL 150
|
....*....
gi 1246783639 1028 LRVEKVGDG 1036
Cdd:cd03227 151 IHIKKVITG 159
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
344-643 |
1.49e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.13 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 344 RSKAEQEQKILGEVKKREQDLDQKASEFEEKGKGIEELTRTITQA-----EQAEKLIWQKKDLEKKIVHLQLKQSETDVP 418
Cdd:PLN02939 106 EAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQArlqalEDLEKILTEKEALQGKINILEMRLSETDAR 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 419 LK-EAQVKLDQlqkEILDESILQEEKDALSRLKLDFHQQLSPLAEyLERLKQENQVAQKELNFAEENIAKM----EQDFM 493
Cdd:PLN02939 186 IKlAAQEKIHV---EILEEQLEKLRNELLIRGATEGLCVHSLSKE-LDVLKEENMLLKDDIQFLKAELIEVaeteERVFK 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 494 LKQEsyqekrklrQSLMIAQLqKELEdglpCKVCGATEHPLSHVELDVS---------DDDLKAAMQQVDEAQEAFAAAE 564
Cdd:PLN02939 262 LEKE---------RSLLDASL-RELE----SKFIVAQEDVSKLSPLQYDcwwekvenlQDLLDRATNQVEKAALVLDQNQ 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 565 ERQEKAQsELEMAQKQAT---EKAETLQEMEQKFDQVYSQFCQAHEGSFPKVFSCQELNIIFQAREDSYRQKStaqKERS 641
Cdd:PLN02939 328 DLRDKVD-KLEASLKEANvskFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEES---KKRS 403
|
..
gi 1246783639 642 LE 643
Cdd:PLN02939 404 LE 405
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
947-1017 |
1.61e-05 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 46.93 E-value: 1.61e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1246783639 947 NTLSGGETfiaalsIALALSEVVQnsaqgvqieaLFVDegFGSLDQETLQKAMTALEQIgenrlvGLISHV 1017
Cdd:COG0419 157 ETLSGGER------LRLALADLLS----------LILD--FGSLDEERLERLLDALEEL------AIITHV 203
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
190-470 |
2.28e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 2.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 190 SEEVRNQYTKNNQENATLDSILQSQYSSSVWTEEEAKALEECPDKEkFDKATEFLEQKQMQESKARDLAKIAQQQVETID 269
Cdd:TIGR02168 728 ISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA-EEELAEAEAEIEELEAQIEQLKEELKALREALD 806
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 270 KAYEDALLLEREFLEAEKTQKEYQEKIAEQAAfyeqqkeayEARSWAQQFKDILRDLEKVEKELEANQVREADYRSKAEQ 349
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATER---------RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 350 EQKilgEVKKREQDLDQKASEFEEKGKGIEELTRTITQAEQaekliwQKKDLEKKIVHLQLKQSetdvplkEAQVKLDQL 429
Cdd:TIGR02168 878 LLN---ERASLEEALALLRSELEELSEELRELESKRSELRR------ELEELREKLAQLELRLE-------GLEVRIDNL 941
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1246783639 430 QKEILDESILQEEKDALSRLKLDFhqQLSPLAEYLERLKQE 470
Cdd:TIGR02168 942 QERLSEEYSLTLEEAEALENKIED--DEEEARRRLKRLENK 980
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
24-51 |
4.66e-05 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 42.20 E-value: 4.66e-05
10 20
....*....|....*....|....*...
gi 1246783639 24 LDEAPLFLISGDTGAGKSTIFDAMTYAL 51
Cdd:pfam13555 19 IDPRGNTLLTGPSGSGKSTLLDAIQTLL 46
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
234-485 |
1.11e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 234 KEKFDKATEFLE-QKQMQE--SKARDLAKIAQQQVETIDKAYEDALLLEREFLEAEKTQKEYQEKIAEQAAFYEQ-QKEA 309
Cdd:TIGR04523 349 KELTNSESENSEkQRELEEkqNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELlEKEI 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 310 YEARSWAQQFKDILRDLEKVEKELEANQVREADYRSKAEQEQKIL-GEVKKREQDLDQKASEFEEKGKGIEELTRTITQA 388
Cdd:TIGR04523 429 ERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLsRSINKIKQNLEQKQKELKSKEKELKKLNEEKKEL 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 389 EQaekliwQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEIL-DESILQeeKDALSRLKLDFHQQLSPLAEYLERL 467
Cdd:TIGR04523 509 EE------KVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNkDDFELK--KENLEKEIDEKNKEIEELKQTQKSL 580
|
250
....*....|....*...
gi 1246783639 468 KQENQVAQKELNFAEENI 485
Cdd:TIGR04523 581 KKKQEEKQELIDQKEKEK 598
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
222-393 |
1.30e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 222 EEEAKALEECPDKEKFDKATEFLEQKQMQ---ESKARDLAKIA------QQQVETIDKAYEDAlllEREFLEAEKTQKEY 292
Cdd:pfam17380 410 ERQRKIQQQKVEMEQIRAEQEEARQREVRrleEERAREMERVRleeqerQQQVERLRQQEEER---KRKKLELEKEKRDR 486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 293 QEKIAEQAAFYEQQKEAYEARSWAQQFKDILrdlekVEKELEANQ--VREADYRSKAEQEQKILGEVKKREQDLDQ--KA 368
Cdd:pfam17380 487 KRAEEQRRKILEKELEERKQAMIEEERKRKL-----LEKEMEERQkaIYEEERRREAEEERRKQQEMEERRRIQEQmrKA 561
|
170 180
....*....|....*....|....*...
gi 1246783639 369 SEFEEKGKGIE---ELTRTITQAEQAEK 393
Cdd:pfam17380 562 TEERSRLEAMErerEMMRQIVESEKARA 589
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
172-512 |
1.75e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 172 EKEEILKKIFGTA-IFTVFSEEVRNQYT-KNNQENATLDSIL---QSQYSSSVWTEEEA--KALEECPDKEKFDKATEFL 244
Cdd:pfam17380 234 EKMERRKESFNLAeDVTTMTPEYTVRYNgQTMTENEFLNQLLhivQHQKAVSERQQQEKfeKMEQERLRQEKEEKAREVE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 245 EQKQMQESKARDLAKIAQQQVETidkAYEDALLLEREfLEAEKTQKEYQEKIAEQAAFYEQQKEAYEARSWAQQFKDILR 324
Cdd:pfam17380 314 RRRKLEEAEKARQAEMDRQAAIY---AEQERMAMERE-RELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQ 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 325 DLEKVEKELEA---NQVREADYRSKAEQEQKILGEVKKREQDLDQKASEF--EEKGKGIEEL-TRTITQAEQAEKLIWQK 398
Cdd:pfam17380 390 KNERVRQELEAarkVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRleEERAREMERVrLEEQERQQQVERLRQQE 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 399 KDLEKKIVHLQLKQSEtdvplkeaQVKLDQLQKEILDESiLQEEKDALsrlkldfhqqlspLAEYLERLKQENQVAQKEL 478
Cdd:pfam17380 470 EERKRKKLELEKEKRD--------RKRAEEQRRKILEKE-LEERKQAM-------------IEEERKRKLLEKEMEERQK 527
|
330 340 350
....*....|....*....|....*....|....
gi 1246783639 479 NFAEENIAKMEQDFMLKQESYQEKRKLRQSLMIA 512
Cdd:pfam17380 528 AIYEEERRREAEEERRKQQEMEERRRIQEQMRKA 561
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1-522 |
1.82e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 1 MKPIYLEMNYFGPHAHSEIDFRAldeaPLFLISGDTGAGKSTIFDAMTYALFdKTTGDREAREMRSQFAQPDQR-TEVIF 79
Cdd:PRK03918 1 MKIEELKIKNFRSHKSSVVEFDD----GINLIIGQNGSGKSSILEAILVGLY-WGHGSKPKGLKKDDFTRIGGSgTEIEL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 80 YFEQGNFLYKVQR-CPEQEVFKKRGTGTKT--EKSQASLAIVDRVFgieqaslatkPVDV--------ASEIYGLLNlSA 148
Cdd:PRK03918 76 KFEKNGRKYRIVRsFNRGESYLKYLDGSEVleEGDSSVREWVERLI----------PYHVflnaiyirQGEIDAILE-SD 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 149 EQFKKII--LLPQNDFSRFLKSATNEKEEILKKIFGTAIFTVFSEEVRNQYTKNNQENATLDSILQSQYSSSVWTEEEAK 226
Cdd:PRK03918 145 ESREKVVrqILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELE 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 227 ALEEcpDKEKFDKATEFLEQKQMQESKARDLAKIAQQQVETIDKAYEdalllereflEAEKTQKEYQEKIAEQAAFYEQQ 306
Cdd:PRK03918 225 KLEK--EVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIE----------ELKKEIEELEEKVKELKELKEKA 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 307 KEAYEARSWAQQFKDILRDLEKvekeleanqvREADYR----------SKAEQEQKILGEVKKREQDLDQKASEFEEKGK 376
Cdd:PRK03918 293 EEYIKLSEFYEEYLDELREIEK----------RLSRLEeeingieeriKELEEKEERLEELKKKLKELEKRLEELEERHE 362
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 377 GIEELTRTITQAEQ--AEKLIWQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEIldesilQEEKDALSRLK---- 450
Cdd:PRK03918 363 LYEEAKAKKEELERlkKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEI------KELKKAIEELKkakg 436
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 451 --------LDFHQQLSPLAEYLERLKQenqvAQKELNFAEENIAKMEQDFMLKQESYQEKRKLRQSLMIAQLQKELEDGL 522
Cdd:PRK03918 437 kcpvcgreLTEEHRKELLEEYTAELKR----IEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKL 512
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
235-592 |
2.21e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 235 EKFDKATEFLEQKQMQESKARDLAKIAQQQVETidkayedallLEREFLEAEKTQKEYQEKiaEQAAFYEQQKEAYEARs 314
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLER----------LRREREKAERYQALLKEK--REYEGYELLKEKEALE- 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 315 waQQFKDILRDLEKVEKELEANQVREADYRSKAEQEQKILGEVKKREQDL-DQKASEFEEKgkgIEELTRTITQAEQAEK 393
Cdd:TIGR02169 237 --RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEK---IGELEAEIASLERSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 394 LIWQK-KDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEildESILQEEKDALSRLKLDFHQQLSPLAEYLERLKQENQ 472
Cdd:TIGR02169 312 EKERElEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR---RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 473 VAQKELNFAEENIAKMEQDFMLKQEsyqEKRKLRQSLmiAQLQKELEDGLpckvcgaTEHPLSHVELDVSDDDLKAAMQQ 552
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQE---ELQRLSEEL--ADLNAAIAGIE-------AKINELEEEKEDKALEIKKQEWK 456
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1246783639 553 VDEAQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEME 592
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
291-872 |
2.90e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 291 EYQEKIAEQAAFYEQQKEAYEARSWAQQFKDILRDLEKVEKELEANQVREADYRSKAEQEQKILGEVKKREQDLDQKASE 370
Cdd:pfam02463 153 ERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 371 FEEKGKgiEELTRTITQAEQAEKLIwQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEILDESILQEEKDALSRLK 450
Cdd:pfam02463 233 KLNEER--IDLLQELLRDEQEEIES-SKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 451 LDFHQQlsplaeyLERLKQENQVAQKELNFAEENIAKMEqdfmlKQESYQEKRKLRQSLMIAQLQKELEDGLPCKVCGAT 530
Cdd:pfam02463 310 VDDEEK-------LKESEKEKKKAEKELKKEKEEIEELE-----KELKELEIKREAEEEEEEELEKLQEKLEQLEEELLA 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 531 EHPLSHVELDVSDDDLKAAMQQVDEAQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEmEQKFDQVYSQFCQAHEGSF 610
Cdd:pfam02463 378 KKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEE-SIELKQGKLTEEKEELEKQ 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 611 PKVFSCQELNIIFQAREDSYRQKsTAQKERSLEKEKLRVLVENLEAERQGLFQESDKVKAQLEIVAQSLAEFGQLQPSQA 690
Cdd:pfam02463 457 ELKLLKDELELKKSEDLLKETQL-VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLG 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 691 LKEQKVILRQEVDNYYTECQEVREKIIALEKRYAEQKAKHEERLMRIEEQKLKLQEGQRIIQNALAAPNAWANDLVTLKN 770
Cdd:pfam02463 536 VAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 771 WLtEDKLPEISKFINTYELEEKRLNRALAKYEQKLSGKQRPDLTELREEKQALSESFSQAQKTVIELSNTRQQLETIVAK 850
Cdd:pfam02463 616 DE-DDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI 694
|
570 580
....*....|....*....|..
gi 1246783639 851 IEQTLETQGKAADKAREMTKLY 872
Cdd:pfam02463 695 LRRQLEIKKKEQREKEELKKLK 716
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
222-851 |
8.22e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 222 EEEAKALEECPDKEKfDKATEFLEQKQMQESKARDLAKIAQQQVETIDKAYEDALLLEREFLEAEKTQKEYQEKIAEQaa 301
Cdd:TIGR02168 343 EEKLEELKEELESLE-AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERL-- 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 302 fyEQQKEAYEARSWAQQFKDILRDLEKVEKELEANQVREADYRSKAEQEQKILGEVKKREQDLDQKASEFEEKGKGIEEL 381
Cdd:TIGR02168 420 --QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 382 TRTITQAEQAEKLIWQKKDLEKKIVHLQLKQSETD-------------------VPLKEAQVKLDQLQKE---------- 432
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQSGLSGILGVLSELISVDegyeaaieaalggrlqavvVENLNAAKKAIAFLKQnelgrvtflp 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 433 ----------ILDESILQEEKDALSRLKL--DFHQQLSPLAEYL-------ERLKQENQVA------------------- 474
Cdd:TIGR02168 578 ldsikgteiqGNDREILKNIEGFLGVAKDlvKFDPKLRKALSYLlggvlvvDDLDNALELAkklrpgyrivtldgdlvrp 657
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 475 ------------------QKELNFAEENIAKMEQDFMLKQESYQEKRKLRQSL--MIAQLQKELEDglpckvcgatehpl 534
Cdd:TIGR02168 658 ggvitggsaktnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELeeELEQLRKELEE-------------- 723
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 535 SHVELDVSDDDLKAAMQQVDEAQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEMEQKFDQVYSQFCQAHEgsfpkvf 614
Cdd:TIGR02168 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE------- 796
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 615 SCQELNIIFQAREDSYRQKSTAQKERSLEKEKLRVLVENLEAERQGLFQESDKVKAQLEIVAQSLAEFGQLQPS-----Q 689
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEleselE 876
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 690 ALKEQKVILRQEVDNYYTECQEVREKIIALEKRYAEQKAKHEERLMRIEEQKLKLQEGQRIIQNALAAPNAWANDLvtlk 769
Cdd:TIGR02168 877 ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT---- 952
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 770 nwltedkLPEISKFINTYELEEKRLNRALAKYEQKLSGKQRPDLTELrEEKQALSESFSQAQKTVIELSNTRQQLETIVA 849
Cdd:TIGR02168 953 -------LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAI-EEYEELKERYDFLTAQKEDLTEAKETLEEAIE 1024
|
..
gi 1246783639 850 KI 851
Cdd:TIGR02168 1025 EI 1026
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
652-867 |
9.24e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 9.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 652 ENLEAERQGLFQESDKVKAQLEIVAQSLAEfgQLQPSQALKEQKVILRQEVDNYYTECQEVREKIIALEKRYAEQKAKHE 731
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKA--LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 732 ERLMRIEEQKLKLQEGQRIIQNALAAPNAWANDLVTLKNWLtEDKLPEISKFINTYELEEKRLNRALAKYEQKLSGKQRp 811
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYL-KYLAPARREQAEELRADLAELAALRAELEAERAELEA- 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1246783639 812 DLTELREEKQALSESFSQAQKTVIELSNTRQQLETIVAKIEQTLETQGKAADKARE 867
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
274-490 |
1.02e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.12 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 274 DALLLEREFLEAEKTQKEYQEKIAE--QAA--FYEQQKEAYEArswAQQFKDILRDLEKVEKELEANQVREADYR----- 344
Cdd:PRK10929 24 DEKQITQELEQAKAAKTPAQAEIVEalQSAlnWLEERKGSLER---AKQYQQVIDNFPKLSAELRQQLNNERDEPrsvpp 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 345 --SKAEQEQKILgEVKKREQDLDQKASEFEEKGKGIEELTRTITQaEQAEKliwqKKDLEKKIVHLQLkQSETDVPLKEA 422
Cdd:PRK10929 101 nmSTDALEQEIL-QVSSQLLEKSRQAQQEQDRAREISDSLSQLPQ-QQTEA----RRQLNEIERRLQT-LGTPNTPLAQA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 423 QVKLDQ----LQKEILDESILQE----EKDALSRLKLDFHQQLSplaeylERLKQENQVAQKELNF-----AEENIAKME 489
Cdd:PRK10929 174 QLTALQaesaALKALVDELELAQlsanNRQELARLRSELAKKRS------QQLDAYLQALRNQLNSqrqreAERALESTE 247
|
.
gi 1246783639 490 Q 490
Cdd:PRK10929 248 L 248
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
31-490 |
1.13e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 31 LISGDTGAGKSTIFDAMTYALFD--------------------------KTTGDREAREMRSQFAQPDQRTEVI---FYF 81
Cdd:COG4913 28 LLTGDNGSGKSTLLDAIQTLLVPakrprfnkaandagksdrtllsyvrgKYGSERDEAGTRPVYLRPGDTWSAIaatFAN 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 82 EQGNFLYKVQRcpeqeVFKKRGTGTKTEKSQASLAIVDRVFGIEQASLATKPVDVaseiygllnlsaEQFKKiiLLPQND 161
Cdd:COG4913 108 DGSGQTVTLAQ-----VFWLKGDASSLGDVKRFFVIADGPLDLEDFEEFAHGFDI------------RALKA--RLKKQG 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 162 FSRFlksaTNEKE--EILKKIFG---TAIFTVFSeevRNQYTKNNQenaTLDSILQSQysssvwteeeakALEECPDKEK 236
Cdd:COG4913 169 VEFF----DSFSAylARLRRRLGigsEKALRLLH---KTQSFKPIG---DLDDFVREY------------MLEEPDTFEA 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 237 FDKAtefleQKQMQE-SKARDLAKIAQQQVETidkayedallLERefleAEKTQKEYQEKiAEQAAFYEQQKEAyeARSW 315
Cdd:COG4913 227 ADAL-----VEHFDDlERAHEALEDAREQIEL----------LEP----IRELAERYAAA-RERLAELEYLRAA--LRLW 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 316 AQQfkdilRDLEKVEKELEANQvreadyrskaeqeqkilGEVKKREQDLDQKASEFEEKGKGIEELTRTITQAEQAekli 395
Cdd:COG4913 285 FAQ-----RRLELLEAELEELR-----------------AELARLEAELERLEARLDALREELDELEAQIRGNGGD---- 338
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 396 wQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQ-KEILDESILQEEKDALSRLKLDFHQQLSPLAEYLERLKQENQVA 474
Cdd:COG4913 339 -RLEQLEREIERLERELEERERRRARLEALLAALGlPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDL 417
|
490
....*....|....*.
gi 1246783639 475 QKELNFAEENIAKMEQ 490
Cdd:COG4913 418 RRELRELEAEIASLER 433
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
321-877 |
1.20e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 321 DILRDLEKVEKELEANQVReadYRSKAEQEQKILGEVKKREQDLDQKASEFEEKGKGIEELTRTITQAEQaekliwQKKD 400
Cdd:PRK02224 206 ERLNGLESELAELDEEIER---YEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETER------EREE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 401 LEKKIVHLQLKQSETDVPLKEAqvkLDQLQKEILDESILQEEKDALSRlkldfhqQLSPLAEYLERLKQENQVAQKELNF 480
Cdd:PRK02224 277 LAEEVRDLRERLEELEEERDDL---LAEAGLDDADAEAVEARREELED-------RDEELRDRLEECRVAAQAHNEEAES 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 481 AEENIAKMEqdfmlkqESYQEKRKLRqslmiAQLQKELEDGlpckvcgATEHPLSHVELDVSDDDLKAAMQQVDEAQEAF 560
Cdd:PRK02224 347 LREDADDLE-------ERAEELREEA-----AELESELEEA-------REAVEDRREEIEELEEEIEELRERFGDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 561 AAAEERQEKAQSELEMAQKQATEKAETLQEMEQKFDQVYSQFcqaHEGSFPkvfSCQelniifQAREDSYRQKSTAQKer 640
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARERVEEAEALL---EAGKCP---ECG------QPVEGSPHVETIEED-- 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 641 slekeklRVLVENLEAERQGLFQESDKVKAQLEiVAQSLAEfgQLQPSQALKEQKVILRQEVDNYYTECQEVREKIIALE 720
Cdd:PRK02224 474 -------RERVEELEAELEDLEEEVEEVEERLE-RAEDLVE--AEDRIERLEERREDLEELIAERRETIEEKRERAEELR 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 721 KRYAEQKAKHEERLMRIEEQKLKLQEGQRiiqnALAAPNAwanDLVTLKNWLTE-DKLPEISKFINTYELEEKRLNRALA 799
Cdd:PRK02224 544 ERAAELEAEAEEKREAAAEAEEEAEEARE----EVAELNS---KLAELKERIESlERIRTLLAAIADAEDEIERLREKRE 616
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1246783639 800 KYeQKLSGKQRPDLTELREEKQALSESFSQAQktVIELSNTRQQLETIVAKIEqtletqGKAADKAREMTKLYNAIAG 877
Cdd:PRK02224 617 AL-AELNDERRERLAEKRERKRELEAEFDEAR--IEEAREDKERAEEYLEQVE------EKLDELREERDDLQAEIGA 685
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
223-380 |
1.31e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.89 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 223 EEAKA-LEEcpDKEKFDKATEFLEQKQM-QESKARDLAKIAQqqvetidkayedalllereflEAEKTQKEYQEKIA--- 297
Cdd:PRK00409 505 EEAKKlIGE--DKEKLNELIASLEELEReLEQKAEEAEALLK---------------------EAEKLKEELEEKKEklq 561
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 298 --EQAAFYEQQKEAYEARSWAQQ-FKDILRDLEKVEKELEANQvreadyrsKAEQEQKILGEVKKREQDLDQKASEFEEK 374
Cdd:PRK00409 562 eeEDKLLEEAEKEAQQAIKEAKKeADEIIKELRQLQKGGYASV--------KAHELIEARKRLNKANEKKEKKKKKQKEK 633
|
....*.
gi 1246783639 375 GKGIEE 380
Cdd:PRK00409 634 QEELKV 639
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
259-438 |
1.36e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 259 KIAQQQVETIDKAYEDALLLEREFLEAEKTQKEYQEKIAEQAAFYEQQKEAYEARSW-AQQFKDILRDLEKVEKELEANQ 337
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNElQKLEKRLLQKEENLDRKLELLE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 338 VREADYRSKAEQEQKILGEVKKREQDLDQKASEFEEKGKGIEELTrtitqAEQAEKLIWQKkdLEKKIVH---LQLKQSE 414
Cdd:PRK12704 107 KREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLT-----AEEAKEILLEK--VEEEARHeaaVLIKEIE 179
|
170 180
....*....|....*....|....
gi 1246783639 415 tdvplKEAQVKLDQLQKEILDESI 438
Cdd:PRK12704 180 -----EEAKEEADKKAKEILAQAI 198
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
226-755 |
1.48e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 226 KALEECPDKEKFDKATefLEQKQMQESKARDLAKIAQQQVETIDKAYEDALLLEREFLEAEKTQKEYQEKIAEQAAFYEQ 305
Cdd:TIGR00606 426 EQADEIRDEKKGLGRT--IELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEV 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 306 QKEAYEARSWAQQFKDILRDLEKVEKELEANQVREADYRSKAEQEQKILGEVKKREQDLDQKASEFEEKGKGIEELTRTI 385
Cdd:TIGR00606 504 KSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKS 583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 386 TQAEQAEKLIwqkKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEILDESILQEEKDALSRLKLDFHQ---QLSPLA- 461
Cdd:TIGR00606 584 KEINQTRDRL---AKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKsskQRAMLAg 660
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 462 ------EYLERLKQENQ----VAQKELNfAEENIAKMEQDFMLKQESYQEKRKLRQSLmIAQLQKELEDGLPCKVCGATE 531
Cdd:TIGR00606 661 atavysQFITQLTDENQsccpVCQRVFQ-TEAELQEFISDLQSKLRLAPDKLKSTESE-LKKKEKRRDEMLGLAPGRQSI 738
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 532 HPLSHVELDVSDDDLKAAMQQVDEAQEAFAAAEERQEKAQSELEMAQKQATEKA--ETLQEMEQKFDQVYSQFCQAHEGS 609
Cdd:TIGR00606 739 IDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTimERFQMELKDVERKIAQQAAKLQGS 818
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 610 fPKVFSCQELNIIFQAREDSYRQKSTaqkerslEKEKLRVLVENLEAERQGLFQESDKVKAQLEIVAQSLAEfgqlqpSQ 689
Cdd:TIGR00606 819 -DLDRTVQQVNQEKQEKQHELDTVVS-------KIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQR------RQ 884
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1246783639 690 ALKEQKVILRQEVDNYYTECQEVREKIIALEKRYAEQKAKHEERLMRIEEQKLKLQEGQRIIQNAL 755
Cdd:TIGR00606 885 QFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKV 950
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
296-871 |
1.67e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 296 IAEQAAFYEQQKEAYEARSWAQQFKDILR---DLEKVEKELEANQVREADyrskaeqEQKILGEVKKR-EQDLDQKASEF 371
Cdd:pfam12128 227 IRDIQAIAGIMKIRPEFTKLQQEFNTLESaelRLSHLHFGYKSDETLIAS-------RQEERQETSAElNQLLRTLDDQW 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 372 EEKgkgIEELTRTITQAEQAekliWQKKDLEKKIVHLQLKQSEtDVPLKEAQVKLDQLQKEILDESILQEEKDALS---- 447
Cdd:pfam12128 300 KEK---RDELNGELSAADAA----VAKDRSELEALEDQHGAFL-DADIETAAADQEQLPSWQSELENLEERLKALTgkhq 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 448 -------RLKLDFHQQLSPLAEYLERlKQENQVAQKELNFAEENIAKMEQDFMLKQESYQEKRKLRqslmIAQLQKELED 520
Cdd:pfam12128 372 dvtakynRRRSKIKEQNNRDIAGIKD-KLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFN----EEEYRLKSRL 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 521 G-LPCKVCGATEHPLSHVELDVSDDDLKAAmqqvdeaQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEMEQKFDQVY 599
Cdd:pfam12128 447 GeLKLRLNQATATPELLLQLENFDERIERA-------REEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQ 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 600 SQFCQAHEGSFPKVFScqelniifqaredsyrqkstaqkerslekeklrvLVENLEAERQGLFQESDKVKAQLEIVAQSL 679
Cdd:pfam12128 520 SALDELELQLFPQAGT----------------------------------LLHFLRKEAPDWEQSIGKVISPELLHRTDL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 680 -AEFGQLQPSQALKEQKVIL---RQEVDNYYTECQEVREKIIALEKRYAEQKAKH---EERLM----RIEEQKLKLQEGQ 748
Cdd:pfam12128 566 dPEVWDGSVGGELNLYGVKLdlkRIDVPEWAASEEELRERLDKAEEALQSAREKQaaaEEQLVqangELEKASREETFAR 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 749 RIIQNALAAPNAWANDLVTLKNWLTEDKLPEISKF---INTYELEEKRLNRALakyeQKLSGKQRPDLTELREEKQAlse 825
Cdd:pfam12128 646 TALKNARLDLRRLFDEKQSEKDKKNKALAERKDSAnerLNSLEAQLKQLDKKH----QAWLEEQKEQKREARTEKQA--- 718
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1246783639 826 sfsQAQKTVIELSNTRQQLETIVAKIEQTLETQGKAADK--AREMTKL 871
Cdd:pfam12128 719 ---YWQVVEGALDAQLALLKAAIAARRSGAKAELKALETwyKRDLASL 763
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
401-519 |
2.45e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 401 LEKKIVHLQLKQSETDVP--LKEAQVKLDQLQKEILdesilQEEKDALSRLKLDFHQQLSPLAEYLErlKQENQVAQKE- 477
Cdd:PRK12704 24 VRKKIAEAKIKEAEEEAKriLEEAKKEAEAIKKEAL-----LEAKEEIHKLRNEFEKELRERRNELQ--KLEKRLLQKEe 96
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1246783639 478 -LNFAEENIAKMEQDFMLKQESYQ------EKRKLRQSLMIAQLQKELE 519
Cdd:PRK12704 97 nLDRKLELLEKREEELEKKEKELEqkqqelEKKEEELEELIEEQLQELE 145
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
325-520 |
3.39e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 325 DLEKVEKELEANQVREADYRSKAEQEQKILGEVKKREQDLDQKASEFEEKGKGIE--------ELTRTITQAEQAEKLIW 396
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEqelaaleaELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 397 QKKDLEKKIVHLQLKQSETDVPL--------KEAQVKLDQLQ------KEILDEsiLQEEKDALSRLKLDFHQQLSPLAE 462
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLAlllspedfLDAVRRLQYLKylaparREQAEE--LRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 463 YLERLKQENQVAQKELNFAEENIAKMEQDFMLKQESYQEKRKLRQSL--MIAQLQKELED 520
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELeaLIARLEAEAAA 238
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
251-1045 |
3.62e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 251 ESKARDLAKIAQQQVETIDKAYEDALLLER--EFLE-AEKTQKEYQEKiAEQAAFYEQQKEAyeARSWAQQfkdilRDLE 327
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREqiELLEpIRELAERYAAA-RERLAELEYLRAA--LRLWFAQ-----RRLE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 328 KVEKELEANQvreadyrskaeqeqkilGEVKKREQDLDQKASEFEEKGKGIEELTRTITQAEQAekliwQKKDLEKKIVH 407
Cdd:COG4913 292 LLEAELEELR-----------------AELARLEAELERLEARLDALREELDELEAQIRGNGGD-----RLEQLEREIER 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 408 LQLKQSETDVPLKEAQVKLDQLQ-KEILDESILQEEKDALSRLKLDFHQQLSPLAEYLERLKQENQVAQKELNFAEENIA 486
Cdd:COG4913 350 LERELEERERRRARLEALLAALGlPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 487 KMEQdfmlkqesyqekrklRQSLM---IAQLQKELedglpCKVCGATEHPLSHV-EL-DVSDDD---------------- 545
Cdd:COG4913 430 SLER---------------RKSNIparLLALRDAL-----AEALGLDEAELPFVgELiEVRPEEerwrgaiervlggfal 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 546 --------LKAAMQQVDEA-----------QEAFAAAEERQEKAQS----------------ELEMAQKQATEKAETLQE 590
Cdd:COG4913 490 tllvppehYAAALRWVNRLhlrgrlvyervRTGLPDPERPRLDPDSlagkldfkphpfrawlEAELGRRFDYVCVDSPEE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 591 MEQkFDQVYSQFCQAHEGsfpkvFSCQELNIIFQAREDSYRQKSTAQKERSLEKEklrvlVENLEAERQGLFQESDKVKA 670
Cdd:COG4913 570 LRR-HPRAITRAGQVKGN-----GTRHEKDDRRRIRSRYVLGFDNRAKLAALEAE-----LAELEEELAEAEERLEALEA 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 671 QLEIVAQSLAEFGQLQPS--------------QALKEQKVILRQEVDnyytECQEVREKIIALEKRYAEQKAKHEERLMR 736
Cdd:COG4913 639 ELDALQERREALQRLAEYswdeidvasaereiAELEAELERLDASSD----DLAALEEQLEELEAELEELEEELDELKGE 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 737 IEEQKLKLQEGQRIIQNALAAPNAWANDLVTLKNWLTEDKLPEISKFINTYELEE------KRLNRALAKYEQKLSGKQR 810
Cdd:COG4913 715 IGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELREnleeriDALRARLNRAEEELERAMR 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 811 -----------------PDLTELREEKQALSES--------FSQAQKtvielSNTRQQLETIVAKIEQtletqgkAADKA 865
Cdd:COG4913 795 afnrewpaetadldadlESLPEYLALLDRLEEDglpeyeerFKELLN-----ENSIEFVADLLSKLRR-------AIREI 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 866 REMTKLYNAIAGK----TGDKLKLETFV-----VQHYLEKVLIYANQHFINQLSNNRYRFELAKE------SANKRHDHG 930
Cdd:COG4913 863 KERIDPLNDSLKRipfgPGRYLRLEARPrpdpeVREFRQELRAVTSGASLFDEELSEARFAALKRlierlrSEEEESDRR 942
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 931 -------------LDISIYDNETGA----SRSSNTLSGGET-----FI--AALSIALALSEVVQNSAQGVqiealFVDEG 986
Cdd:COG4913 943 wrarvldvrnhleFDAEEIDREDGEevetYSSSGGKSGGEKqklayFIlaAALAYQLGLEGRGRPSFRTV-----VLDEA 1017
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1246783639 987 FGSLDQETLQKAMTALEQIGENRLVG----LISHVEEmknSIAQQLRVEKVGDGRSQVKLFSK 1045
Cdd:COG4913 1018 FSKMDEEFARRALRLFKELGLQLLIAtpldKIQAIEP---YVGSVLVVHKDDGRRSRVRELTI 1077
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
222-965 |
4.11e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 222 EEEAKALEECPDKEKFDKATEFLEQKQMQESKARDLAKIAQQQVETIDKAYEDALLLEREFLEAEKTQKEYQEKIAEQAA 301
Cdd:pfam02463 358 EEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEE 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 302 FYEQQKEAYEARSWAQQFKDILRDLEKVEKELEANQVREADYRSKAEQEQKILGEVKKREQDLDQKASEFEEKGKGIE-- 379
Cdd:pfam02463 438 SIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALik 517
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 380 --ELTRTITQAEQAEKLIWQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEILDESILQEEKDALSRLKLDFHQQL 457
Cdd:pfam02463 518 dgVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVL 597
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 458 SPLAEYLERLKQENQVAQKELNFAEENIAKMEQDFMLKQESYQEKRKLRQSLMIAQLQKELEDGLPCKVCGATEHPLSHV 537
Cdd:pfam02463 598 EIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLE 677
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 538 ELDVSDDD------LKAAMQQVDEAQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEMEQKFDQVYSQFCQAHEGSFP 611
Cdd:pfam02463 678 IQELQEKAeselakEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRL 757
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 612 KVFSCQELNIIFQAREDSYRQKSTAQKERSLEKEKLRVLVENLEAERQGLFQESDKVKAQLEIVAQSLAEFGQLQPSQAL 691
Cdd:pfam02463 758 KKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEE 837
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 692 KEQKVILRQEVDNYYTECQEVREKIIALEKRYAEQKAKheERLMRIEEQKLKLQEGQRIIQNALAAPNAWANDLVTLKNw 771
Cdd:pfam02463 838 LALELKEEQKLEKLAEEELERLEEEITKEELLQELLLK--EEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEE- 914
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 772 lTEDKLPEISKFINTYELEEKRLNRALAKYEQKLSGKQRPDLTELREEKQALSESFSQAQKTVIElsntrqQLETIVAKI 851
Cdd:pfam02463 915 -KENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLM------AIEEFEEKE 987
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 852 EQTLETQGKAADKAREMTKLYNAIAGKTGDKLKLETFvvqhylEKVLIYANQHFINQLSNNRYRFELAKESANKRHDHGL 931
Cdd:pfam02463 988 ERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLE------LFVSINKGWNKVFFYLELGGSAELRLEDPDDPFSGGI 1061
|
730 740 750
....*....|....*....|....*....|....
gi 1246783639 932 DISIYDNETGAsRSSNTLSGGETFIAALSIALAL 965
Cdd:pfam02463 1062 EISARPPGKGV-KNLDLLSGGEKTLVALALIFAI 1094
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
259-451 |
5.05e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 5.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 259 KIAQQQVETIDKAYEDALLLEREFLEAEKTQKEYQEKIAEQAAFYEQQKEAYEARSWAQQFKDILRDLEKVEKELEANQV 338
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 339 R-------EADYRSKAEQEQKILGEVKKREQDLDQKASEFeekgkgieeltrTITQAEQAEKLIWQKKDLEKKIVHLQLK 411
Cdd:COG4717 147 RleeleerLEELRELEEELEELEAELAELQEELEELLEQL------------SLATEEELQDLAEELEELQQRLAELEEE 214
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1246783639 412 QSETDVPLKEAQVKLDQLQKEILDESILQEEKDALSRLKL 451
Cdd:COG4717 215 LEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLI 254
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
629-745 |
6.83e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 40.43 E-value: 6.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 629 SYRQKSTAQKERSLEKEKLRVLVENLEAERQGLFQESDKVKAQLEIVAQSLA----EFGQLQPSQALKEQKVILRQEVDN 704
Cdd:pfam05911 675 SNDLKTEENKRLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAelrsELASLKESNSLAETQLKCMAESYE 754
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1246783639 705 --------YYTECQEVREKIIALEKRYAEQKAKHEERLMRIEEQKLKLQ 745
Cdd:pfam05911 755 dletrlteLEAELNELRQKFEALEVELEEEKNCHEELEAKCLELQEQLE 803
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
149-471 |
6.96e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.22 E-value: 6.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 149 EQFKKIILLPQNDFSRFLKSATNEKEEILKKI----FGTAIFTVFSEE----VRNQYTKNNQENATLDSILQSQYSSsvW 220
Cdd:PLN03229 439 EKLKEQILKAKESSSKPSELALNEMIEKLKKEidleYTEAVIAMGLQErlenLREEFSKANSQDQLMHPVLMEKIEK--L 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 221 TEEEAKALEECPD----KEKFDKATEFLEQKQMQESKARdlakiAQQQVETIDKAYEDALllerefleaekTQKEYQEKI 296
Cdd:PLN03229 517 KDEFNKRLSRAPNylslKYKLDMLNEFSRAKALSEKKSK-----AEKLKAEINKKFKEVM-----------DRPEIKEKM 580
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 297 AEQAAFYEQQKeayeARSWAQQFKDILRDLEKVEKELE---ANQVREADYRSKAEQEQKILGEVKKREQDLDQKASEF-E 372
Cdd:PLN03229 581 EALKAEVASSG----ASSGDELDDDLKEKVEKMKKEIElelAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLnE 656
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 373 EKGKGIEELTRTitqaeqaekliwqkKDLEKKIVHLQL---KQSET-DVPLKEAQVKLDQLQKEILDESIlqeekdALSR 448
Cdd:PLN03229 657 EINKKIERVIRS--------------SDLKSKIELLKLevaKASKTpDVTEKEKIEALEQQIKQKIAEAL------NSSE 716
|
330 340
....*....|....*....|...
gi 1246783639 449 LKLDFHQQLSPLAEYLERLKQEN 471
Cdd:PLN03229 717 LKEKFEELEAELAAARETAAESN 739
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
246-405 |
7.70e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 39.79 E-value: 7.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 246 QKQMQESKARDLAKIAQQQVETIDKAYEDALLLEREFLEAEKTQKEyQEKIAEQAAfyEQQKEAYEARSWAQQFKDILRD 325
Cdd:PRK09510 74 AKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQ-AEEAAKQAA--LKQKQAEEAAAKAAAAAKAKAE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 326 LEKVEKELEANQVR-EADYRSKAEQEQKILGEVKKREQDLDQKASEFEEKGKGIEEltrtitQAEQAEKLIWQKKDLEKK 404
Cdd:PRK09510 151 AEAKRAAAAAKKAAaEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAE------AKKKAAAEAKKKAAAEAK 224
|
.
gi 1246783639 405 I 405
Cdd:PRK09510 225 A 225
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
362-597 |
7.80e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 7.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 362 QDLDQKASEFEEKGKGIEELTRTITQAE-QAEKLIWQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEIldesilq 440
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKkEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI------- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 441 eekdalSRLKLDFHQQLSPLAEYLERLKQENQVAQKELNFAEENIAKMEQDFMLKQESYQEKRKLRQSLmiAQLQKELED 520
Cdd:COG4942 93 ------AELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEEL--RADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1246783639 521 glpckvcgatehplSHVELDVSDDDLKAAMQQVDEAQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEMEQKFDQ 597
Cdd:COG4942 165 --------------LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
24-55 |
8.69e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 38.11 E-value: 8.69e-03
10 20 30
....*....|....*....|....*....|..
gi 1246783639 24 LDEAPLFLISGDTGAGKSTIFDAMTYALFDKT 55
Cdd:cd03227 18 FGEGSLTIITGPNGSGKSTILDAIGLALGGAQ 49
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
222-753 |
9.73e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 40.12 E-value: 9.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 222 EEEAKALEECPDKEKFDkatefLEQKQMQESKARDLAKIAQQQVETIDKAYEDALLLEREFLEA-----EKTQKEYQEKI 296
Cdd:pfam07111 79 EEEVRLLRETSLQQKMR-----LEAQAMELDALAVAEKAGQAEAEGLRAALAGAEMVRKNLEEGsqrelEEIQRLHQEQL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 297 AEQAAFYEQQKEAYEARSwaqqfkdilRDLEKVEKELEANQVREADYRSKAEQEQKIL-GEVKKREQDLDQKASEFEEKG 375
Cdd:pfam07111 154 SSLTQAHEEALSSLTSKA---------EGLEKSLNSLETKRAGEAKQLAEAQKEAELLrKQLSKTQEELEAQVTLVESLR 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 376 KGIEELTRTITQAEQAEKliwQKKDLEKKIVHLQLKQSETDVPLKEAQVKLDQLQKEI-LDESILQEEKDALSRLKLDFH 454
Cdd:pfam07111 225 KYVGEQVPPEVHSQTWEL---ERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLaLQEEELTRKIQPSDSLEPEFP 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 455 QQLSPLaeyLERLKQENQVAQKELNFAEENIAKMEQDFMLKQESYQEKrKLRQSLMIAQLQKELEDGLPCKVCGATEHPL 534
Cdd:pfam07111 302 KKCRSL---LNRWREKVFALMVQLKAQDLEHRDSVKQLRGQVAELQEQ-VTSQSQEQAILQRALQDKAAEVEVERMSAKG 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 535 SHVELDVSDDDLKAAMQQVDEAQEAFAAAEERQEKAQSELEMAQKQATEKAETLQEMEQKFD------------------ 596
Cdd:pfam07111 378 LQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSyavrkvhtikglmarkva 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 597 --QVYSQFCQAHEGSfPKVFSCQELNIIfQAREDSYRQKSTAQKERSLEKEKLRVLVENLEAERQGLFQESDKVKAQLEI 674
Cdd:pfam07111 458 laQLRQESCPPPPPA-PPVDADLSLELE-QLREERNRLDAELQLSAHLIQQEVGRAREQGEAERQQLSEVAQQLEQELQR 535
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1246783639 675 VAQSLAEFGQ-----LQPSQALKEQKVILRQEVdnyyTECQEV-----REKIIALEKRYAEQKAKHEERLMRIEEQKLKL 744
Cdd:pfam07111 536 AQESLASVGQqlevaRQGQQESTEEAASLRQEL----TQQQEIygqalQEKVAEVETRLREQLSDTKRRLNEARREQAKA 611
|
....*....
gi 1246783639 745 QEGQRIIQN 753
Cdd:pfam07111 612 VVSLRQIQH 620
|
|
| |
