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Conserved domains on  [gi|1225570926|ref|WP_093575716|]
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ParA family protein [Amycolatopsis rubida]

Protein Classification

ParA family protein( domain architecture ID 11439703)

ParA (plasmid partition protein A) family protein similar to ParA, which is essential for plasmid partition, ensuring the proper distribution of newly replicated plasmids to daughter cells during cell division

CATH:  3.40.50.300
Gene Ontology:  GO:0005524|GO:0016887
PubMed:  17161598|2149583|26339031|11522360
SCOP:  4003982

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ParA COG1192
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ...
 40-167 7.90e-09

ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];


:

Pssm-ID: 440805 [Multi-domain]  Cd Length: 253  Bit Score: 55.25  E-value: 7.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1225570926  40 TVACVSRRGGLGRSSMLREFGAAWARQGKRVLLADLDP---------------VQSLKRMLAGNARAAAVVPWSGVHGEL 104
Cdd:COG1192     3 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPqgnltsglgldpddlDPTLYDLLLDDAPLEDAIVPTEIPGLD 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1225570926 105 VI--HRAENGGELRLLTGLRGATAtdLRSALDAARAQADVVLLDTAPADtGPETWFAEEVADAVI 167
Cdd:COG1192    83 LIpaNIDLAGAEIELVSRPGRELR--LKRALAPLADDYDYILIDCPPSL-GLLTLNALAAADSVL 144
 
Name Accession Description Interval E-value
ParA COG1192
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ...
 40-167 7.90e-09

ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440805 [Multi-domain]  Cd Length: 253  Bit Score: 55.25  E-value: 7.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1225570926  40 TVACVSRRGGLGRSSMLREFGAAWARQGKRVLLADLDP---------------VQSLKRMLAGNARAAAVVPWSGVHGEL 104
Cdd:COG1192     3 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPqgnltsglgldpddlDPTLYDLLLDDAPLEDAIVPTEIPGLD 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1225570926 105 VI--HRAENGGELRLLTGLRGATAtdLRSALDAARAQADVVLLDTAPADtGPETWFAEEVADAVI 167
Cdd:COG1192    83 LIpaNIDLAGAEIELVSRPGRELR--LKRALAPLADDYDYILIDCPPSL-GLLTLNALAAADSVL 144
CbiA pfam01656
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ...
 48-149 2.00e-06

CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.


Pssm-ID: 426369 [Multi-domain]  Cd Length: 228  Bit Score: 48.11  E-value: 2.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1225570926  48 GGLGRSSMLREFGAAWARQGKRVLLADLDPvQSLKRMLAG---------NARAAAVVPWSGVHGELVIHRAENGGeLRLL 118
Cdd:pfam01656   8 GGVGKTTLAANLARALARRGLRVLLIDLDP-QSNNSSVEGlegdiapalQALAEGLKGRVNLDPILLKEKSDEGG-LDLI 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1225570926 119 TG-----------LRGATATDLRSALDAARAQADVVLLDTAP 149
Cdd:pfam01656  86 PGnidlekfekelLGPRKEERLREALEALKEDYDYVIIDGAP 127
ParAB_family cd02042
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ...
 40-81 7.58e-06

partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.


Pssm-ID: 349760 [Multi-domain]  Cd Length: 130  Bit Score: 44.45  E-value: 7.58e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1225570926  40 TVACVSRRGGLGRSSMLREFGAAWARQGKRVLLADLDPVQSL 81
Cdd:cd02042     2 VIAVANQKGGVGKTTLAVNLAAALALRGKRVLLIDLDPQGSL 43
CpaE_hom_Actino TIGR03815
helicase/secretion neighborhood CpaE-like protein; Members of this protein family belong to ...
 27-167 1.45e-03

helicase/secretion neighborhood CpaE-like protein; Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see ). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.


Pssm-ID: 274798 [Multi-domain]  Cd Length: 322  Bit Score: 39.63  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1225570926  27 ALMDAGLSRP-RGVTVACVSRRGGLGRSSMLREFGAAWARQGKRVLLADLDPVQS-LKRMLAGN----------ARAAAV 94
Cdd:TIGR03815  81 LLADLDQSPPaRGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGgLDLLLGAEdvpglrwpdlSQARGR 160

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1225570926  95 VPWSGVHGELvihraENGGELRLLTGLRGA----TATDLRSALDAARAQADVVLLDTaPADTGPETWFAEEVADAVI 167
Cdd:TIGR03815 161 LPAGALRDAL-----PRRGGLSVLSWGRAVgaalPPAAVRAVLDAARRGGDLVVVDL-PRRLTPAAETALESADLVL 231
 
Name Accession Description Interval E-value
ParA COG1192
ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein ...
 40-167 7.90e-09

ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440805 [Multi-domain]  Cd Length: 253  Bit Score: 55.25  E-value: 7.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1225570926  40 TVACVSRRGGLGRSSMLREFGAAWARQGKRVLLADLDP---------------VQSLKRMLAGNARAAAVVPWSGVHGEL 104
Cdd:COG1192     3 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPqgnltsglgldpddlDPTLYDLLLDDAPLEDAIVPTEIPGLD 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1225570926 105 VI--HRAENGGELRLLTGLRGATAtdLRSALDAARAQADVVLLDTAPADtGPETWFAEEVADAVI 167
Cdd:COG1192    83 LIpaNIDLAGAEIELVSRPGRELR--LKRALAPLADDYDYILIDCPPSL-GLLTLNALAAADSVL 144
FlhG COG0455
MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell ...
 59-167 5.94e-08

MinD-like ATPase FlhG/YlxH, activator of the FlhF-type GTPase [Cell cycle control, cell division, chromosome partitioning, Cell motility];


Pssm-ID: 440223 [Multi-domain]  Cd Length: 230  Bit Score: 52.58  E-value: 5.94e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1225570926  59 FGAAWARQGKRVLLADLD-------------PVQSLKRMLAGNARAAAvvpwsgvhgelVIHRAENGgeLRLLTGLRGAT 125
Cdd:COG0455     6 LAAALARLGKRVLLVDADlglanldvllglePKATLADVLAGEADLED-----------AIVQGPGG--LDVLPGGSGPA 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1225570926 126 -------ATDLRSALDAARAQADVVLLDTaPADTGPETWFAEEVADAVI 167
Cdd:COG0455    73 elaeldpEERLIRVLEELERFYDVVLVDT-GAGISDSVLLFLAAADEVV 120
Mrp COG0489
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ...
 27-167 5.04e-07

Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440255 [Multi-domain]  Cd Length: 289  Bit Score: 50.19  E-value: 5.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1225570926  27 ALMDAGLSRPRGVTVACVSRRGGLGRSSMLREFGAAWARQGKRVLLADLD---PVQSlkRMLAGNARAAAVVPWSG-VHG 102
Cdd:COG0489    81 LLLLLLLLRLLLEVIAVTSGKGGEGKSTVAANLALALAQSGKRVLLIDADlrgPSLH--RMLGLENRPGLSDVLAGeASL 158

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1225570926 103 ELVIHRAENGGeLRLLT-GLRGATATDLRSA------LDAARAQADVVLLDTAPADTGPETWFAEEVADAVI 167
Cdd:COG0489   159 EDVIQPTEVEG-LDVLPaGPLPPNPSELLASkrlkqlLEELRGRYDYVIIDTPPGLGVADATLLASLVDGVL 229
CbiA pfam01656
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ...
 48-149 2.00e-06

CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.


Pssm-ID: 426369 [Multi-domain]  Cd Length: 228  Bit Score: 48.11  E-value: 2.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1225570926  48 GGLGRSSMLREFGAAWARQGKRVLLADLDPvQSLKRMLAG---------NARAAAVVPWSGVHGELVIHRAENGGeLRLL 118
Cdd:pfam01656   8 GGVGKTTLAANLARALARRGLRVLLIDLDP-QSNNSSVEGlegdiapalQALAEGLKGRVNLDPILLKEKSDEGG-LDLI 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1225570926 119 TG-----------LRGATATDLRSALDAARAQADVVLLDTAP 149
Cdd:pfam01656  86 PGnidlekfekelLGPRKEERLREALEALKEDYDYVIIDGAP 127
ParAB_family cd02042
partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved ...
 40-81 7.58e-06

partition proteins ParAB family; ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.


Pssm-ID: 349760 [Multi-domain]  Cd Length: 130  Bit Score: 44.45  E-value: 7.58e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1225570926  40 TVACVSRRGGLGRSSMLREFGAAWARQGKRVLLADLDPVQSL 81
Cdd:cd02042     2 VIAVANQKGGVGKTTLAVNLAAALALRGKRVLLIDLDPQGSL 43
FlhG-like cd02038
MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) ...
 40-149 6.16e-05

MinD-like ATPase FlhG; FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.


Pssm-ID: 349758 [Multi-domain]  Cd Length: 230  Bit Score: 43.33  E-value: 6.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1225570926  40 TVACVSRRGGLGRSSMLREFGAAWARQGKRVLLADLD-------------PVQSLKRMLAGNARAaavvpwsgvhgELVI 106
Cdd:cd02038     2 IIAVTSGKGGVGKTNVSANLALALSKLGKRVLLLDADlglanldillglaPKKTLGDVLKGRVSL-----------EDII 70

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1225570926 107 HRAENGgeLRLLTGLRGATA---------TDLRSALDAARAQADVVLLDTAP 149
Cdd:cd02038    71 VEGPEG--LDIIPGGSGMEElanldpeqkAKLIEELSSLESNYDYLLIDTGA 120
CpaE COG4963
Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular ...
 34-150 6.78e-04

Flp pilus assembly ATPase CpaE/TadZ, contains N-terminal REC/TadZ_N domain [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443989 [Multi-domain]  Cd Length: 358  Bit Score: 40.87  E-value: 6.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1225570926  34 SRPRGVTVACVSRRGGLGRSSMLREFGAAWARQ-GKRVLLADLD-------------PVQSLKRMLAGNAR--AAAVvpw 97
Cdd:COG4963    98 AARRGRVIAVVGAKGGVGATTLAVNLAWALAREsGRRVLLVDLDlqfgdvalyldlePRRGLADALRNPDRldETLL--- 174

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1225570926  98 sgvhGELVIHRAENggeLRLLTG------LRGATATDLRSALDAARAQADVVLLDTAPA 150
Cdd:COG4963   175 ----DRALTRHSSG---LSVLAApadlerAEEVSPEAVERLLDLLRRHFDYVVVDLPRG 226
CpaE_hom_Actino TIGR03815
helicase/secretion neighborhood CpaE-like protein; Members of this protein family belong to ...
 27-167 1.45e-03

helicase/secretion neighborhood CpaE-like protein; Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see ). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.


Pssm-ID: 274798 [Multi-domain]  Cd Length: 322  Bit Score: 39.63  E-value: 1.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1225570926  27 ALMDAGLSRP-RGVTVACVSRRGGLGRSSMLREFGAAWARQGKRVLLADLDPVQS-LKRMLAGN----------ARAAAV 94
Cdd:TIGR03815  81 LLADLDQSPPaRGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGgLDLLLGAEdvpglrwpdlSQARGR 160

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1225570926  95 VPWSGVHGELvihraENGGELRLLTGLRGA----TATDLRSALDAARAQADVVLLDTaPADTGPETWFAEEVADAVI 167
Cdd:TIGR03815 161 LPAGALRDAL-----PRRGGLSVLSWGRAVgaalPPAAVRAVLDAARRGGDLVVVDL-PRRLTPAAETALESADLVL 231
CBP_BcsQ pfam06564
Cellulose biosynthesis protein BcsQ; This is a family of bacterial proteins involved in ...
 47-168 1.47e-03

Cellulose biosynthesis protein BcsQ; This is a family of bacterial proteins involved in cellulose biosynthesis. (Roemling U. and Galperin M.Y. "Bacterial cellulose biosynthesis. Diversity of operons and subunits" (manuscript in preparation)). A second component of the extracellular matrix of the multicellular morphotype (rdar) of Salmonella typhimurium and Escherichia coli is cellulose. The family does contain a P-loop sequence motif suggesting a nucleotide binding function, but this has not been confirmed.


Pssm-ID: 429004 [Multi-domain]  Cd Length: 234  Bit Score: 39.28  E-value: 1.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1225570926  47 RGGLGRSSMLREFGAAWARQGKRVLLADLDPVQSLK-------RMLAGNARAAA-VVPWSGVHGELVIHRA------ENG 112
Cdd:pfam06564  10 RGGVGTTSILAALAWALQRLGERVLLIDLSPDNLLRlhfnvpfEHRQGWARAELdGADWRDAALEYTPGLDllpfgrLSV 89

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1225570926 113 GELRLLTGLRgATATDLRSALDAARAQADVVLLDTaPADTGPETWFAEEVADAVIA 168
Cdd:pfam06564  90 EEQENLQQLQ-PDPGAWCRRLQQLKGRYDWVLFDL-PAGPSPLTRQLLSLADLSLL 143
BY-kinase cd05387
bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on ...
 51-149 2.75e-03

bacterial tyrosine-kinase; Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.


Pssm-ID: 349772 [Multi-domain]  Cd Length: 190  Bit Score: 38.32  E-value: 2.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1225570926  51 GRSSMLREFGAAWARQGKRVLLADLD---PVQS----------LKRMLAGNARAAAVVPWSGVHGELVI---HRAENGGE 114
Cdd:cd05387    32 GKSTVAANLAVALAQSGKRVLLIDADlrrPSLHrllglpnepgLSEVLSGQASLEDVIQSTNIPNLDVLpagTVPPNPSE 111

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1225570926 115 LrlltgLRGATATDLrsaLDAARAQADVVLLDTAP 149
Cdd:cd05387   112 L-----LSSPRFAEL---LEELKEQYDYVIIDTPP 138
eps_transp_fam TIGR01005
exopolysaccharide transport protein family; The model describes the exopolysaccharide ...
 41-149 6.53e-03

exopolysaccharide transport protein family; The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]


Pssm-ID: 273391 [Multi-domain]  Cd Length: 764  Bit Score: 38.16  E-value: 6.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1225570926  41 VACVSRRGGLGRSSMLREFGAAWARQGKRVLLADLD-------------PVQSLKRMLAGNARAAAVVPWSGVHGELVI- 106
Cdd:TIGR01005 556 IAIAGALPDEGKSFIAANFAALIAAGGKRTLLIDADirkgglhqmfgkaPKPGLLDLLAGEASIEAGIHRDQRPGLAFIa 635

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1225570926 107 -----HRAENGGELRLltglrgatATDLRSALDAARAQADVVLLDTAP 149
Cdd:TIGR01005 636 aggasHFPHNPNELLA--------NPAMAELIDNARNAFDLVLVDLAA 675
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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