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Conserved domains on  [gi|1207740000|ref|WP_088095961|]
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MULTISPECIES: PadR family transcriptional regulator [Bacillus]

Protein Classification

PadR family transcriptional regulator( domain architecture ID 11447737)

PadR family transcriptional regulator similar to the phenolic acid decarboxylation repressor, which is a transcription factor that represses genes associated with the phenolic acid stress response in gram-positive bacteria

Gene Ontology:  GO:0003677|GO:0003700
PubMed:  10679470|10908318|10473770|15808743|8831795

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
6-85 5.17e-22

DNA-binding transcriptional regulator, PadR family [Transcription];


:

Pssm-ID: 441301  Cd Length: 102  Bit Score: 84.99  E-value: 5.17e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207740000   6 VVLGLLMEKELSGYDIKIVFEDVFTHFFDGSFGMIYPTLRQLEKEGKIKKEVIMQEGKPNKKMYFITDEGREEFYQYMQT 85
Cdd:COG1695    13 LILALLAEGPMYGYEIIKELEERSGGFWKVSEGTLYPALKRLEKEGLVESEWEESEGGPRRKYYRLTEAGREELAEWLEE 92
 
Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
6-85 5.17e-22

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 84.99  E-value: 5.17e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207740000   6 VVLGLLMEKELSGYDIKIVFEDVFTHFFDGSFGMIYPTLRQLEKEGKIKKEVIMQEGKPNKKMYFITDEGREEFYQYMQT 85
Cdd:COG1695    13 LILALLAEGPMYGYEIIKELEERSGGFWKVSEGTLYPALKRLEKEGLVESEWEESEGGPRRKYYRLTEAGREELAEWLEE 92
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 7-79 3.29e-12

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


Pssm-ID: 397561  Cd Length: 74  Bit Score: 58.80  E-value: 3.29e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207740000   7 VLGLLMEKELSGYDIKIVFEDVFTHFFDGSFGMIYPTLRQLEKEGKIKKEVIMQEGKPNKKMYFITDEGREEF 79
Cdd:pfam03551   1 VLAVLGEQPRYGYEIIKELEELSGGFWRPSEGTLYPILKRLEKEGLVESEWVDSGGGPPRKYYRLTDAGRREL 73
 
Name Accession Description Interval E-value
PadR COG1695
DNA-binding transcriptional regulator, PadR family [Transcription];
6-85 5.17e-22

DNA-binding transcriptional regulator, PadR family [Transcription];


Pssm-ID: 441301  Cd Length: 102  Bit Score: 84.99  E-value: 5.17e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207740000   6 VVLGLLMEKELSGYDIKIVFEDVFTHFFDGSFGMIYPTLRQLEKEGKIKKEVIMQEGKPNKKMYFITDEGREEFYQYMQT 85
Cdd:COG1695    13 LILALLAEGPMYGYEIIKELEERSGGFWKVSEGTLYPALKRLEKEGLVESEWEESEGGPRRKYYRLTEAGREELAEWLEE 92
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 7-79 3.29e-12

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


Pssm-ID: 397561  Cd Length: 74  Bit Score: 58.80  E-value: 3.29e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1207740000   7 VLGLLMEKELSGYDIKIVFEDVFTHFFDGSFGMIYPTLRQLEKEGKIKKEVIMQEGKPNKKMYFITDEGREEF 79
Cdd:pfam03551   1 VLAVLGEQPRYGYEIIKELEELSGGFWRPSEGTLYPILKRLEKEGLVESEWVDSGGGPPRKYYRLTDAGRREL 73
HTH_34 pfam13601
Winged helix DNA-binding domain;
38-83 3.69e-03

Winged helix DNA-binding domain;


Pssm-ID: 463932 [Multi-domain]  Cd Length: 80  Bit Score: 34.92  E-value: 3.69e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1207740000  38 GMIYPTLRQLEKEGKIKKEVIMQEGKPNKkMYFITDEGREEFYQYM 83
Cdd:pfam13601  29 GNLSVHLRKLEKAGYIECDKSFVGRKPRT-LYRITPEGREAFEDYV 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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