|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09409 |
PRK09409 |
IS2 transposase TnpB; Reviewed |
110-398 |
1.33e-127 |
|
IS2 transposase TnpB; Reviewed
Pssm-ID: 181829 [Multi-domain] Cd Length: 301 Bit Score: 369.81 E-value: 1.33e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 110 MDSARALVAKGRGIALVSRTMGVSRAQLSLRINRSADWQDKRCNRRNDEADeeILSAILDIISDMPSYGYRRVWGILRKQ 189
Cdd:PRK09409 1 MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTD--VLLRIHHVIGELPTYGYRRVWALLRRQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 190 RRTEGQPPVNAKRLYRIMSEhNLLLLHDKPERP--KREHKGKIAVAESDMRWCSDGFEFGCDNGEKLRVTFALDCCDREA 267
Cdd:PRK09409 79 AELDGMPAINAKRVYRIMRQ-NALLLERKPAVPpsKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 268 IDWAASTGGYDSSTVQDVMLRSVEKRFGDRLPDTAVQWLTDNGSAYTAYETWRFARELNLEPCTTAVSSPQSNGMAERFV 347
Cdd:PRK09409 158 LHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFV 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1194622906 348 KTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSALGYHSPREYRRQR 398
Cdd:PRK09409 238 KTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQR 288
|
|
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
17-395 |
1.74e-87 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 269.82 E-value: 1.74e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 17 QEKIAIIQQTMEPGMNVSHVARLHGIQPSLLFKWKKQYQEGSLTAVAAgeevVPASELTAALKQVRELQRLLGKKTMEVE 96
Cdd:NF033516 1 EFKLEAVREVLEGGKSVAEVARELGISPSTLYRWRKKYRGGGEAADAG----RLKELLTPEEEENRRLKRELAELRLENE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 97 ILKEAVEYGQSPKMdsaRALVAKGRG---IALVSRTMGVSRAqlSLRinrsaDWQDKRCNRRNDEaDEEILSAILDIISD 173
Cdd:NF033516 77 ILKKARKLLRPAVK---YALIDALRGeysVRRACRVLGVSRS--TYY-----YWRKRPPSRRAPD-DAELRARIREIFEE 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 174 MP-SYGYRRVWGILRKQRRtegqpPVNAKRLYRIMSEHNLLLLHDKPERPKREHKGKIA------------VAESDMRWC 240
Cdd:NF033516 146 SRgRYGYRRITALLRREGI-----RVNHKRVYRLMRELGLLARRRRKRRPYTTDSGHVHpvapnllnrqftATRPNQVWV 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 241 SDGFEFGCDNGeKLRVTFALDCCDREAIDWAASTGgYDSSTVQDVMLRSVEKRfgdRLPDTAVqWLTDNGSAYTAYETWR 320
Cdd:NF033516 221 TDITYIRTAEG-WLYLAVVLDLFSREIVGWSVSTS-MSAELVLDALEMAIEWR---GKPEGLI-LHSDNGSQYTSKAYRE 294
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1194622906 321 FARELNLEPCTTAVSSPQSNGMAERFVKTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSALGYHSPREYR 395
Cdd:NF033516 295 WLKEHGITQSMSRPGNCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
96-397 |
9.75e-50 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 170.33 E-value: 9.75e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 96 EILKEAVEYGQSPKMDSARALVAKGRGIALVSRTMGVSRAQLSLRINRSADWQDKRCNRR----NDEADEEILSAILDII 171
Cdd:COG2801 2 LAEEEELRKEEELLRRLLLLLRLLLLRRRVLRRVSRRRRRLLRLLRRRRARSRRRRRLRRprsyRADEDAELLERIKEIF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 172 SDMPSYGYRRVWGILRKQRRtegqpPVNAKRLYRIMSEHNLLLLHDKPERP--KREHKGKIA------VAESDMRWCSDG 243
Cdd:COG2801 82 AESPRYGYRRITAELRREGI-----AVNRKRVRRLMRELGLQARRRRKKKYttYSGHGGPIApnllftATAPNQVWVTDI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 244 FEFGCDNGeKLRVTFALDCCDREAIDWAASTGGyDSSTVQDVMLRSVEKRfGDRLPdtaVQWLTDNGSAYTAYETWRFAR 323
Cdd:COG2801 157 TYIPTAEG-WLYLAAVIDLFSREIVGWSVSDSM-DAELVVDALEMAIERR-GPPKP---LILHSDNGSQYTSKAYQELLK 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1194622906 324 ELNLEPCTTAVSSPQSNGMAERFVKTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSALGYHSPREYRRQ 397
Cdd:COG2801 231 KLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQ 304
|
|
| PRK09413 |
PRK09413 |
IS2 repressor TnpA; Reviewed |
5-109 |
4.74e-46 |
|
IS2 repressor TnpA; Reviewed
Pssm-ID: 181833 Cd Length: 121 Bit Score: 154.58 E-value: 4.74e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 5 LLGQEARKRKTPQEKIAIIQQTMEPGMNVSHVARLHGIQPSLLFKWKKQYQEGSLTAVAAGEEVVPASELTAALKQVREL 84
Cdd:PRK09413 4 VLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKEL 83
|
90 100
....*....|....*....|....*
gi 1194622906 85 QRLLGKKTMEVEILKEAVEYGQSPK 109
Cdd:PRK09413 84 QRLLGKKTMENELLKEAVEYGRAKK 108
|
|
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
113-391 |
3.04e-21 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 92.65 E-value: 3.04e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 113 ARALVAKGRGIALVSRTMGVSRAQLSlRINRSADWQ-----------DKRCNRRNDEADEEIlsaILDIISDMpSYGYRR 181
Cdd:NF033577 6 VRLVLEDGWSVREAARRFGISRKTVY-KWLKRYRAGgeeglidrsrrPHRSPRRTSPETEAR---ILALRREL-RLGPRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 182 VWGILRKQRrtegqPPVNAKRLYRIMSEHNLLLLHDKpERPKREHKgKIAVAESDMRWCSDGFEFG--CDNGeKLRVTFA 259
Cdd:NF033577 81 IAYELERQG-----PGVSRSTVHRILRRHGLSRLRAL-DRKTGKVK-RYERAHPGELWHIDIKKLGriPDVG-RLYLHTA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 260 LDCCDREAIdwaasTGGYDSSTVQDVM--LRSVEKRFGdrLPDTAVqwLTDNGSAYTAYETW--RFARELNLEPCTTAVS 335
Cdd:NF033577 153 IDDHSRFAY-----AELYPDETAETAAdfLRRAFAEHG--IPIRRV--LTDNGSEFRSRAHGfeLALAELGIEHRRTRPY 223
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1194622906 336 SPQSNGMAERFVKTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSALGYHSP 391
Cdd:NF033577 224 HPQTNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTP 279
|
|
| InsE |
COG2963 |
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
11-104 |
2.15e-19 |
|
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 82.28 E-value: 2.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 11 RKRKTPQEKIAIIQQTMEPGMNVSHVARLHGIQPSLLFKWKKQYQEGSLTAVAAGEEVVPASEltaalkQVRELQRLLGK 90
Cdd:COG2963 5 RRRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRTTPEQA------EIRRLRKELRR 78
|
90
....*....|....
gi 1194622906 91 KTMEVEILKEAVEY 104
Cdd:COG2963 79 LEMENDILKKAAAL 92
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
238-337 |
5.14e-18 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 78.51 E-value: 5.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 238 RWCSDGFEFGCDNGE-KLRVTFALDCCDREAIDWAASTGGyDSSTVQDVMLRSVEKRFGdrLPDTavqWLTDNGSAYTAY 316
Cdd:pfam00665 4 LWQGDFTYIRIPGGGgKLYLLVIVDDFSREILAWALSSEM-DAELVLDALERAIAFRGG--VPLI---IHSDNGSEYTSK 77
|
90 100
....*....|....*....|.
gi 1194622906 317 ETWRFARELNLEPCTTAVSSP 337
Cdd:pfam00665 78 AFREFLKDLGIKPSFSRPGNP 98
|
|
| HTH_Tnp_1 |
pfam01527 |
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ... |
9-88 |
1.77e-14 |
|
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.
Pssm-ID: 426308 [Multi-domain] Cd Length: 75 Bit Score: 68.15 E-value: 1.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 9 EARKRKTPQEKIAIIQQTMEPGMNVSHVARLHGIQPSLLFKWKKQYQEgsltavaaGEEVVPAS-ELTAALKQVRELQRL 87
Cdd:pfam01527 2 KKRRRFSEEFKLRAVKEVLEPGRTVKEVARRHGVSPNTLYQWRRQYEG--------GMGASPARpRLTALEEENRRLKRE 73
|
.
gi 1194622906 88 L 88
Cdd:pfam01527 74 L 74
|
|
| IS66_access_TnpA |
NF038385 |
IS66-like element accessory protein TnpA; |
8-60 |
4.22e-12 |
|
IS66-like element accessory protein TnpA;
Pssm-ID: 439678 [Multi-domain] Cd Length: 190 Bit Score: 64.35 E-value: 4.22e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1194622906 8 QEARKRKTPQEKIAIIQQTMEPGMNVSHVARLHGIQPSLLFKWKKQYQEGSLT 60
Cdd:NF038385 83 KIRRPNFSREFKIRLVEQTLQPGACVAQIARENGINDNLLFNWRHLYRNGLLQ 135
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09409 |
PRK09409 |
IS2 transposase TnpB; Reviewed |
110-398 |
1.33e-127 |
|
IS2 transposase TnpB; Reviewed
Pssm-ID: 181829 [Multi-domain] Cd Length: 301 Bit Score: 369.81 E-value: 1.33e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 110 MDSARALVAKGRGIALVSRTMGVSRAQLSLRINRSADWQDKRCNRRNDEADeeILSAILDIISDMPSYGYRRVWGILRKQ 189
Cdd:PRK09409 1 MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTD--VLLRIHHVIGELPTYGYRRVWALLRRQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 190 RRTEGQPPVNAKRLYRIMSEhNLLLLHDKPERP--KREHKGKIAVAESDMRWCSDGFEFGCDNGEKLRVTFALDCCDREA 267
Cdd:PRK09409 79 AELDGMPAINAKRVYRIMRQ-NALLLERKPAVPpsKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 268 IDWAASTGGYDSSTVQDVMLRSVEKRFGDRLPDTAVQWLTDNGSAYTAYETWRFARELNLEPCTTAVSSPQSNGMAERFV 347
Cdd:PRK09409 158 LHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFV 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1194622906 348 KTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSALGYHSPREYRRQR 398
Cdd:PRK09409 238 KTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQR 288
|
|
| PRK14702 |
PRK14702 |
insertion element IS2 transposase InsD; Provisional |
149-398 |
6.02e-110 |
|
insertion element IS2 transposase InsD; Provisional
Pssm-ID: 237792 [Multi-domain] Cd Length: 262 Bit Score: 323.22 E-value: 6.02e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 149 DKRCNRRNDEADeeILSAILDIISDMPSYGYRRVWGILRKQRRTEGQPPVNAKRLYRIMSEhNLLLLHDKPERP--KREH 226
Cdd:PRK14702 1 DGRRSRHTDDTD--VLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQ-NALLLERKPAVPpsKRAH 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 227 KGKIAVAESDMRWCSDGFEFGCDNGEKLRVTFALDCCDREAIDWAASTGGYDSSTVQDVMLRSVEKRFGDRLPDTAVQWL 306
Cdd:PRK14702 78 TGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 307 TDNGSAYTAYETWRFARELNLEPCTTAVSSPQSNGMAERFVKTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSAL 386
Cdd:PRK14702 158 TDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL 237
|
250
....*....|..
gi 1194622906 387 GYHSPREYRRQR 398
Cdd:PRK14702 238 GYRSPREYLRQR 249
|
|
| transpos_IS3 |
NF033516 |
IS3 family transposase; |
17-395 |
1.74e-87 |
|
IS3 family transposase;
Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 269.82 E-value: 1.74e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 17 QEKIAIIQQTMEPGMNVSHVARLHGIQPSLLFKWKKQYQEGSLTAVAAgeevVPASELTAALKQVRELQRLLGKKTMEVE 96
Cdd:NF033516 1 EFKLEAVREVLEGGKSVAEVARELGISPSTLYRWRKKYRGGGEAADAG----RLKELLTPEEEENRRLKRELAELRLENE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 97 ILKEAVEYGQSPKMdsaRALVAKGRG---IALVSRTMGVSRAqlSLRinrsaDWQDKRCNRRNDEaDEEILSAILDIISD 173
Cdd:NF033516 77 ILKKARKLLRPAVK---YALIDALRGeysVRRACRVLGVSRS--TYY-----YWRKRPPSRRAPD-DAELRARIREIFEE 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 174 MP-SYGYRRVWGILRKQRRtegqpPVNAKRLYRIMSEHNLLLLHDKPERPKREHKGKIA------------VAESDMRWC 240
Cdd:NF033516 146 SRgRYGYRRITALLRREGI-----RVNHKRVYRLMRELGLLARRRRKRRPYTTDSGHVHpvapnllnrqftATRPNQVWV 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 241 SDGFEFGCDNGeKLRVTFALDCCDREAIDWAASTGgYDSSTVQDVMLRSVEKRfgdRLPDTAVqWLTDNGSAYTAYETWR 320
Cdd:NF033516 221 TDITYIRTAEG-WLYLAVVLDLFSREIVGWSVSTS-MSAELVLDALEMAIEWR---GKPEGLI-LHSDNGSQYTSKAYRE 294
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1194622906 321 FARELNLEPCTTAVSSPQSNGMAERFVKTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSALGYHSPREYR 395
Cdd:NF033516 295 WLKEHGITQSMSRPGNCWDNAVAESFFGTLKRECLYRRRFRTLEEARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
|
|
| Tra5 |
COG2801 |
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
96-397 |
9.75e-50 |
|
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 170.33 E-value: 9.75e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 96 EILKEAVEYGQSPKMDSARALVAKGRGIALVSRTMGVSRAQLSLRINRSADWQDKRCNRR----NDEADEEILSAILDII 171
Cdd:COG2801 2 LAEEEELRKEEELLRRLLLLLRLLLLRRRVLRRVSRRRRRLLRLLRRRRARSRRRRRLRRprsyRADEDAELLERIKEIF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 172 SDMPSYGYRRVWGILRKQRRtegqpPVNAKRLYRIMSEHNLLLLHDKPERP--KREHKGKIA------VAESDMRWCSDG 243
Cdd:COG2801 82 AESPRYGYRRITAELRREGI-----AVNRKRVRRLMRELGLQARRRRKKKYttYSGHGGPIApnllftATAPNQVWVTDI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 244 FEFGCDNGeKLRVTFALDCCDREAIDWAASTGGyDSSTVQDVMLRSVEKRfGDRLPdtaVQWLTDNGSAYTAYETWRFAR 323
Cdd:COG2801 157 TYIPTAEG-WLYLAAVIDLFSREIVGWSVSDSM-DAELVVDALEMAIERR-GPPKP---LILHSDNGSQYTSKAYQELLK 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1194622906 324 ELNLEPCTTAVSSPQSNGMAERFVKTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSALGYHSPREYRRQ 397
Cdd:COG2801 231 KLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEEYIEFYNHERPHSSLGYLTPAEYEKQ 304
|
|
| PRK09413 |
PRK09413 |
IS2 repressor TnpA; Reviewed |
5-109 |
4.74e-46 |
|
IS2 repressor TnpA; Reviewed
Pssm-ID: 181833 Cd Length: 121 Bit Score: 154.58 E-value: 4.74e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 5 LLGQEARKRKTPQEKIAIIQQTMEPGMNVSHVARLHGIQPSLLFKWKKQYQEGSLTAVAAGEEVVPASELTAALKQVREL 84
Cdd:PRK09413 4 VLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKEL 83
|
90 100
....*....|....*....|....*
gi 1194622906 85 QRLLGKKTMEVEILKEAVEYGQSPK 109
Cdd:PRK09413 84 QRLLGKKTMENELLKEAVEYGRAKK 108
|
|
| transpos_IS481 |
NF033577 |
IS481 family transposase; null |
113-391 |
3.04e-21 |
|
IS481 family transposase; null
Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 92.65 E-value: 3.04e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 113 ARALVAKGRGIALVSRTMGVSRAQLSlRINRSADWQ-----------DKRCNRRNDEADEEIlsaILDIISDMpSYGYRR 181
Cdd:NF033577 6 VRLVLEDGWSVREAARRFGISRKTVY-KWLKRYRAGgeeglidrsrrPHRSPRRTSPETEAR---ILALRREL-RLGPRR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 182 VWGILRKQRrtegqPPVNAKRLYRIMSEHNLLLLHDKpERPKREHKgKIAVAESDMRWCSDGFEFG--CDNGeKLRVTFA 259
Cdd:NF033577 81 IAYELERQG-----PGVSRSTVHRILRRHGLSRLRAL-DRKTGKVK-RYERAHPGELWHIDIKKLGriPDVG-RLYLHTA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 260 LDCCDREAIdwaasTGGYDSSTVQDVM--LRSVEKRFGdrLPDTAVqwLTDNGSAYTAYETW--RFARELNLEPCTTAVS 335
Cdd:NF033577 153 IDDHSRFAY-----AELYPDETAETAAdfLRRAFAEHG--IPIRRV--LTDNGSEFRSRAHGfeLALAELGIEHRRTRPY 223
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1194622906 336 SPQSNGMAERFVKTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSALGYHSP 391
Cdd:NF033577 224 HPQTNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTP 279
|
|
| InsE |
COG2963 |
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
11-104 |
2.15e-19 |
|
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons];
Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 82.28 E-value: 2.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 11 RKRKTPQEKIAIIQQTMEPGMNVSHVARLHGIQPSLLFKWKKQYQEGSLTAVAAGEEVVPASEltaalkQVRELQRLLGK 90
Cdd:COG2963 5 RRRYSPEFKAEAVRLVLEGGASVAEVARELGISPSTLYRWVRQYREGGLGGFPGDGRTTPEQA------EIRRLRKELRR 78
|
90
....*....|....
gi 1194622906 91 KTMEVEILKEAVEY 104
Cdd:COG2963 79 LEMENDILKKAAAL 92
|
|
| rve |
pfam00665 |
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
238-337 |
5.14e-18 |
|
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.
Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 78.51 E-value: 5.14e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 238 RWCSDGFEFGCDNGE-KLRVTFALDCCDREAIDWAASTGGyDSSTVQDVMLRSVEKRFGdrLPDTavqWLTDNGSAYTAY 316
Cdd:pfam00665 4 LWQGDFTYIRIPGGGgKLYLLVIVDDFSREILAWALSSEM-DAELVLDALERAIAFRGG--VPLI---IHSDNGSEYTSK 77
|
90 100
....*....|....*....|.
gi 1194622906 317 ETWRFARELNLEPCTTAVSSP 337
Cdd:pfam00665 78 AFREFLKDLGIKPSFSRPGNP 98
|
|
| HTH_Tnp_1 |
pfam01527 |
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ... |
9-88 |
1.77e-14 |
|
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.
Pssm-ID: 426308 [Multi-domain] Cd Length: 75 Bit Score: 68.15 E-value: 1.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 9 EARKRKTPQEKIAIIQQTMEPGMNVSHVARLHGIQPSLLFKWKKQYQEgsltavaaGEEVVPAS-ELTAALKQVRELQRL 87
Cdd:pfam01527 2 KKRRRFSEEFKLRAVKEVLEPGRTVKEVARRHGVSPNTLYQWRRQYEG--------GMGASPARpRLTALEEENRRLKRE 73
|
.
gi 1194622906 88 L 88
Cdd:pfam01527 74 L 74
|
|
| rve_3 |
pfam13683 |
Integrase core domain; |
332-391 |
4.91e-14 |
|
Integrase core domain;
Pssm-ID: 433402 [Multi-domain] Cd Length: 67 Bit Score: 66.47 E-value: 4.91e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 332 TAVSSPQSNGMAERFVKTMKEDYIAFMPKPDVRTALRNLAVAFTHYNENHPHSALGYHSP 391
Cdd:pfam13683 8 IAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
|
|
| PHA02517 |
PHA02517 |
putative transposase OrfB; Reviewed |
130-393 |
1.54e-12 |
|
putative transposase OrfB; Reviewed
Pssm-ID: 222853 [Multi-domain] Cd Length: 277 Bit Score: 67.58 E-value: 1.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 130 MGVSRAQLSLRINRSADwQDKRCNRRNDeaDEEILSAILDIISD-MPSYGYRRVWGILRKQRRTEGqpPVNAKRLYRIMS 208
Cdd:PHA02517 1 LGIAPSTYYRCQQQRHH-PDKRRARAQH--DDWLKSEILRVYDEnHQVYGVRKVWRQLNREGIRVA--RCTVGRLMKELG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 209 EHNLL--------LLHDKPERPKREHKgKIAVAESDMRWCSDgFEFGCDNGEKLRVTFALDCCDREAIDWAAStggydSS 280
Cdd:PHA02517 76 LAGVLrgkkvrttISRKAVAAPDRVNR-QFVATRPNQLWVAD-FTYVSTWQGWVYVAFIIDVFARRIVGWRVS-----SS 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1194622906 281 TVQDVMLRSVEKRFGDRLPDTAVQWLTDNGSAYTAYETWRFARELNLEPCTTAVSSPQSNGMAERFVKTMKEDYIAFMPK 360
Cdd:PHA02517 149 MDTDFVLDALEQALWARGRPGGLIHHSDKGSQYVSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSW 228
|
250 260 270
....*....|....*....|....*....|...
gi 1194622906 361 PDVRTALRNLAVAFTHYNENHPHSALGYHSPRE 393
Cdd:PHA02517 229 KNREEVELATLEWVAWYNNRRLHERLGYTPPAE 261
|
|
| IS66_access_TnpA |
NF038385 |
IS66-like element accessory protein TnpA; |
8-60 |
4.22e-12 |
|
IS66-like element accessory protein TnpA;
Pssm-ID: 439678 [Multi-domain] Cd Length: 190 Bit Score: 64.35 E-value: 4.22e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1194622906 8 QEARKRKTPQEKIAIIQQTMEPGMNVSHVARLHGIQPSLLFKWKKQYQEGSLT 60
Cdd:NF038385 83 KIRRPNFSREFKIRLVEQTLQPGACVAQIARENGINDNLLFNWRHLYRNGLLQ 135
|
|
| HTH_21 |
pfam13276 |
HTH-like domain; This domain contains a predicted helix-turn-helix suggesting a DNA-binding ... |
158-213 |
1.95e-07 |
|
HTH-like domain; This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.
Pssm-ID: 463824 [Multi-domain] Cd Length: 60 Bit Score: 47.56 E-value: 1.95e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1194622906 158 EADEEILSAILDIISD-MPSYGYRRVWGILRKQrrteGQPPVNAKRLYRIMSEHNLL 213
Cdd:pfam13276 1 ELEDELLEAIREIFEEsRGTYGYRRITAELRRE----GGIRVNRKRVARLMRELGLR 53
|
|
| HTH_28 |
pfam13518 |
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ... |
18-61 |
1.93e-03 |
|
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.
Pssm-ID: 463908 [Multi-domain] Cd Length: 52 Bit Score: 36.03 E-value: 1.93e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1194622906 18 EKIAIIQQTMEpGMNVSHVARLHGIQPSLLFKWKKQYQEGSLTA 61
Cdd:pfam13518 1 ERLKIVLLALE-GESIKEAARLFGISRSTVYRWIRRYREGGLEG 43
|
|
| |
