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Conserved domains on  [gi|1184523218|ref|WP_085093227|]
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ferredoxin [Mycobacterium paraense]

Protein Classification

ferredoxin( domain architecture ID 10003036)

ferredoxin is an iron-sulfur protein transferring electrons in a wide variety of metabolic reactions

CATH:  3.30.70.20
Gene Ontology:  GO:0051536|GO:0005506|GO:0009055
PubMed:  34698119|35941298
SCOP:  4001234

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fer COG1141
Ferredoxin [Energy production and conversion];
1-60 1.02e-19

Ferredoxin [Energy production and conversion];


:

Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 73.76  E-value: 1.02e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184523218  1 MKVTVDDQRCRGHGVCTTLCPEVFSLTDDGYAEAITSEVPAQFEAATQEAIQCCPEQAIS 60
Cdd:COG1141    1 MKVTVDRDTCIGCGLCVALAPEVFELDDDGKAVVLDEEVPEELEEDVREAADACPVGAIT 60
 
Name Accession Description Interval E-value
Fer COG1141
Ferredoxin [Energy production and conversion];
1-60 1.02e-19

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 73.76  E-value: 1.02e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184523218  1 MKVTVDDQRCRGHGVCTTLCPEVFSLTDDGYAEAITSEVPAQFEAATQEAIQCCPEQAIS 60
Cdd:COG1141    1 MKVTVDRDTCIGCGLCVALAPEVFELDDDGKAVVLDEEVPEELEEDVREAADACPVGAIT 60
Fer4_15 pfam13459
4Fe-4S single cluster domain;
3-60 5.38e-11

4Fe-4S single cluster domain;


Pssm-ID: 404359 [Multi-domain]  Cd Length: 66  Bit Score: 51.98  E-value: 5.38e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1184523218  3 VTVDDQRCRGHGVCTTLCPEVFSLTDDGYAEAITS-------EVPAQFEAATQEAIQCCPEQAIS 60
Cdd:pfam13459  1 VEVDRDRCIGCGLCVALDPELFELDDDGKASVLLDdgeigegEVPDDDEEAAQEAARACPVDAIR 65
 
Name Accession Description Interval E-value
Fer COG1141
Ferredoxin [Energy production and conversion];
1-60 1.02e-19

Ferredoxin [Energy production and conversion];


Pssm-ID: 440756 [Multi-domain]  Cd Length: 63  Bit Score: 73.76  E-value: 1.02e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1184523218  1 MKVTVDDQRCRGHGVCTTLCPEVFSLTDDGYAEAITSEVPAQFEAATQEAIQCCPEQAIS 60
Cdd:COG1141    1 MKVTVDRDTCIGCGLCVALAPEVFELDDDGKAVVLDEEVPEELEEDVREAADACPVGAIT 60
Fer4_15 pfam13459
4Fe-4S single cluster domain;
3-60 5.38e-11

4Fe-4S single cluster domain;


Pssm-ID: 404359 [Multi-domain]  Cd Length: 66  Bit Score: 51.98  E-value: 5.38e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1184523218  3 VTVDDQRCRGHGVCTTLCPEVFSLTDDGYAEAITS-------EVPAQFEAATQEAIQCCPEQAIS 60
Cdd:pfam13459  1 VEVDRDRCIGCGLCVALDPELFELDDDGKASVLLDdgeigegEVPDDDEEAAQEAARACPVDAIR 65
Fer4_13 pfam13370
4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing ...
 5-60 4.44e-07

4Fe-4S single cluster domain of Ferredoxin I; Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteriztic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.


Pssm-ID: 433153 [Multi-domain]  Cd Length: 58  Bit Score: 41.91  E-value: 4.44e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 1184523218  5 VDDQRCRGHGVCTTLCPEVFSLTDDGYAEAITS-EVPAQFEAATQEAIQCCPEQAIS 60
Cdd:pfam13370  1 VDEDTCIDCGTCRELAPEVFKYDDDGGASFVHDqPVNEEEEDLAEEALDSCPVEAIG 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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