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Conserved domains on  [gi|1180694383|ref|WP_084179553|]
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HupE/UreJ family protein [Pseudohalioglobus lutimaris]

Protein Classification

HupE/UreJ family protein( domain architecture ID 10619078)

HupE/UreJ family protein may be a hydrogenase/urease accessory protein containing conserved histidines that are likely to be involved in nickel binding

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HupE_UreJ_2 pfam13795
HupE / UreJ protein; These proteins contain many conserved histidines that may be involved in ...
160-294 1.45e-36

HupE / UreJ protein; These proteins contain many conserved histidines that may be involved in nickel binding.


:

Pssm-ID: 433484  Cd Length: 154  Bit Score: 129.20  E-value: 1.45e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180694383 160 YFTLGVEHILSGWDHLAFVLALCLIA--SGRHLVALVTAFTVGHSLTLALAVIGWVNVPIPAVEACIALSIAFVAREVL- 236
Cdd:pfam13795   1 YVYLGAKHILTGYDHLLFLLGLIFPFltRLKKVLLLVTAFTIGHSITLALAVLGVVTVPARLVEALIALSIVYVALDNLg 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1180694383 237 ---RPSPGKNRGVPIALLFGLLHGLGFASALNEIGFRQGELLAGLVAFNIGVEAGQLLFVC 294
Cdd:pfam13795  81 gkrRFGKKPPNRWAAAFGFGLIHGLGFATVLQDLGLPQDQLLLALLAFNVGVELGQLLVVA 141
 
Name Accession Description Interval E-value
HupE_UreJ_2 pfam13795
HupE / UreJ protein; These proteins contain many conserved histidines that may be involved in ...
160-294 1.45e-36

HupE / UreJ protein; These proteins contain many conserved histidines that may be involved in nickel binding.


Pssm-ID: 433484  Cd Length: 154  Bit Score: 129.20  E-value: 1.45e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180694383 160 YFTLGVEHILSGWDHLAFVLALCLIA--SGRHLVALVTAFTVGHSLTLALAVIGWVNVPIPAVEACIALSIAFVAREVL- 236
Cdd:pfam13795   1 YVYLGAKHILTGYDHLLFLLGLIFPFltRLKKVLLLVTAFTIGHSITLALAVLGVVTVPARLVEALIALSIVYVALDNLg 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1180694383 237 ---RPSPGKNRGVPIALLFGLLHGLGFASALNEIGFRQGELLAGLVAFNIGVEAGQLLFVC 294
Cdd:pfam13795  81 gkrRFGKKPPNRWAAAFGFGLIHGLGFATVLQDLGLPQDQLLLALLAFNVGVELGQLLVVA 141
HupE COG2370
Hydrogenase/urease accessory protein HupE [Posttranslational modification, protein turnover, ...
161-228 5.91e-07

Hydrogenase/urease accessory protein HupE [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441937  Cd Length: 196  Bit Score: 49.08  E-value: 5.91e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1180694383 161 FTLGVEHILSGWDHLAFVLALCLIAS---GRHLVALVTAFTVGHSLTlalAVIGWVNVPIPAVEACIALSI 228
Cdd:COG2370    32 FLSGLAHPLTGLDHLLAMVAVGLWAAllgGRAGWLLPLAFVAAMLLG---ALLGLAGLALPGVETGIAASV 99
 
Name Accession Description Interval E-value
HupE_UreJ_2 pfam13795
HupE / UreJ protein; These proteins contain many conserved histidines that may be involved in ...
160-294 1.45e-36

HupE / UreJ protein; These proteins contain many conserved histidines that may be involved in nickel binding.


Pssm-ID: 433484  Cd Length: 154  Bit Score: 129.20  E-value: 1.45e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1180694383 160 YFTLGVEHILSGWDHLAFVLALCLIA--SGRHLVALVTAFTVGHSLTLALAVIGWVNVPIPAVEACIALSIAFVAREVL- 236
Cdd:pfam13795   1 YVYLGAKHILTGYDHLLFLLGLIFPFltRLKKVLLLVTAFTIGHSITLALAVLGVVTVPARLVEALIALSIVYVALDNLg 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1180694383 237 ---RPSPGKNRGVPIALLFGLLHGLGFASALNEIGFRQGELLAGLVAFNIGVEAGQLLFVC 294
Cdd:pfam13795  81 gkrRFGKKPPNRWAAAFGFGLIHGLGFATVLQDLGLPQDQLLLALLAFNVGVELGQLLVVA 141
HupE COG2370
Hydrogenase/urease accessory protein HupE [Posttranslational modification, protein turnover, ...
161-228 5.91e-07

Hydrogenase/urease accessory protein HupE [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441937  Cd Length: 196  Bit Score: 49.08  E-value: 5.91e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1180694383 161 FTLGVEHILSGWDHLAFVLALCLIAS---GRHLVALVTAFTVGHSLTlalAVIGWVNVPIPAVEACIALSI 228
Cdd:COG2370    32 FLSGLAHPLTGLDHLLAMVAVGLWAAllgGRAGWLLPLAFVAAMLLG---ALLGLAGLALPGVETGIAASV 99
HupE_UreJ pfam04955
HupE / UreJ protein; This family of proteins are hydrogenase / urease accessory proteins. The ...
161-228 8.59e-06

HupE / UreJ protein; This family of proteins are hydrogenase / urease accessory proteins. The alignment contains many conserved histidines that are likely to be involved in nickel binding. The members usually have five membrane-spanning regions.


Pssm-ID: 428218  Cd Length: 179  Bit Score: 45.67  E-value: 8.59e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1180694383 161 FTLGVEHILSGWDHLAFVLALCLIAS---GRHLVALVTAFTvghSLTLALAVIGWVNVPIPAVEACIALSI 228
Cdd:pfam04955  22 FLAGLAHPLTGLDHLLAMVAVGLWAAqlgGRARWLLPLAFV---AAMLVGALLGLAGVPLPAVEPGIAASV 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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