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Conserved domains on  [gi|1174927814|ref|WP_081601034|]
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50S ribosomal protein L33 [Streptococcus ferus]

Protein Classification

50S ribosomal protein L33( domain architecture ID 10011480)

50S ribosomal protein L33 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0005840|GO:0006412|GO:0003735
PubMed:  24524803|11733066

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-48 2.19e-19

50S ribosomal protein L33; Validated


:

Pssm-ID: 179075  Cd Length: 53  Bit Score: 71.77  E-value: 2.19e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1174927814  1 MRVKINLKCSSCGSKNYLTSKNKQNHPDKIEVLKYCPKERKVTLHIES 48
Cdd:PRK00595   5 MRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKET 52
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-48 2.19e-19

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 71.77  E-value: 2.19e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1174927814  1 MRVKINLKCSSCGSKNYLTSKNKQNHPDKIEVLKYCPKERKVTLHIES 48
Cdd:PRK00595   5 MRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKET 52
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-48 1.71e-17

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 67.10  E-value: 1.71e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1174927814  1 MRVKINLKCSSCGSKNYLTSKNKQNHPDKIEVLKYCPKERKVTLHIES 48
Cdd:COG0267    4 MREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKET 51
Ribosomal_L33 pfam00471
Ribosomal protein L33;
4-48 1.48e-13

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 57.05  E-value: 1.48e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 1174927814  4 KINLKCSSCGSKNYLTSKNKQNHPDKIEVLKYCPKERKVTLHIES 48
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKET 45
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-47 2.85e-11

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 51.68  E-value: 2.85e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 1174927814  2 RVKINLKCSSCGSKNYLTSKNKQNHPDKIEVLKYCPKERKVTLHIE 47
Cdd:TIGR01023  7 RELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKE 52
 
Name Accession Description Interval E-value
rpmG PRK00595
50S ribosomal protein L33; Validated
 1-48 2.19e-19

50S ribosomal protein L33; Validated


Pssm-ID: 179075  Cd Length: 53  Bit Score: 71.77  E-value: 2.19e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1174927814  1 MRVKINLKCSSCGSKNYLTSKNKQNHPDKIEVLKYCPKERKVTLHIES 48
Cdd:PRK00595   5 MRVKIKLESTEGTGRFYTTTKNKRNTPEKLELKKYDPVLRKHVLHKET 52
RpmG COG0267
Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 ...
 1-48 1.71e-17

Ribosomal protein L33 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L33 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440037  Cd Length: 52  Bit Score: 67.10  E-value: 1.71e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1174927814  1 MRVKINLKCSSCGSKNYLTSKNKQNHPDKIEVLKYCPKERKVTLHIES 48
Cdd:COG0267    4 MREKITLACTECKGRNYTTTKNKRNTPERLELKKYCPKCRKHTLHKET 51
rpmG PRK00504
50S ribosomal protein L33; Validated
 1-48 3.02e-14

50S ribosomal protein L33; Validated


Pssm-ID: 234783  Cd Length: 50  Bit Score: 58.77  E-value: 3.02e-14
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 1174927814  1 MRVKINLKCSSCGSKNYLTSKNKQNHPDKIEVLKYCPKERKVTLHIES 48
Cdd:PRK00504   2 MRKKITLACTECKSRNYTTTKNKKNTPERLELKKFCPRCNKHTLHKET 49
Ribosomal_L33 pfam00471
Ribosomal protein L33;
4-48 1.48e-13

Ribosomal protein L33;


Pssm-ID: 425701  Cd Length: 46  Bit Score: 57.05  E-value: 1.48e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 1174927814  4 KINLKCSSCGSKNYLTSKNKQNHPDKIEVLKYCPKERKVTLHIES 48
Cdd:pfam00471  1 KITLACTECKGRNYTTTKNKKNTPERLELKKYCPKCRKHTLHKET 45
rpmG_bact TIGR01023
ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 ...
 2-47 2.85e-11

ribosomal protein L33, bacterial type; This model describes bacterial ribosomal protein L33 and its chloroplast and mitochondrial equivalents. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273399  Cd Length: 54  Bit Score: 51.68  E-value: 2.85e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 1174927814  2 RVKINLKCSSCGSKNYLTSKNKQNHPDKIEVLKYCPKERKVTLHIE 47
Cdd:TIGR01023  7 RELIRLVCTACTGINYTTTKNRRNKPEKLELRKYCPVCRKHVLHKE 52
rpl33 CHL00104
ribosomal protein L33
 2-47 4.27e-06

ribosomal protein L33


Pssm-ID: 177033  Cd Length: 66  Bit Score: 38.80  E-value: 4.27e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 1174927814  2 RVKINLKCSSCGSKN----------YLTSKNKQNHPDKIEVLKYCPKERKVTLHIE 47
Cdd:CHL00104   8 RVTVILECTSCVRNGvnkestgisrYITQKNRHNTPNRLELKKFCPYCYKHTIHKE 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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