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Conserved domains on  [gi|1174463157|ref|WP_081479899|]
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OmpA family protein [Verminephrobacter aporrectodeae]

Protein Classification

OmpA family protein( domain architecture ID 11458388)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395|22986056
SCOP:  4001470
TCDB:  1.B.6

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
138-240 6.76e-18

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 76.82  E-value: 6.76e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 138 IVQVSFPTGSTALKPSA-----EIAQVLIAAGKAAnvVNVRGRTDSKvaGALYAKIALG--RAMAARKFLIDHGISTDKI 210
Cdd:cd07185     1 LITIYFDFGSAELTPEAkplldKLAEVLKKNPDAK--IRIEGHTDSR--GSDAYNQELSerRAEAVADYLVSKGVDASRI 76
                          90       100       110
                  ....*....|....*....|....*....|
gi 1174463157 211 KVSSQADGDFAATNNTTQGRAFNRRVEFEF 240
Cdd:cd07185    77 TAVGYGESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
31-243 2.97e-13

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 68.27  E-value: 2.97e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157  31 GASPDYGNTTTTRVFSTPATKAPTQAPPSTNGGDVVKRATDEITAAKPKPGDDDVVALLKLCESQLEKTRYLFDAASKNP 110
Cdd:COG2885    79 SATAAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAA 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 111 QSTGEELFNVYQRLDGIEDRMVTASAAIVQVSFPTGSTALKPSA-----EIAQVLIAAGKAanVVNVRGRTDSKVAGALY 185
Cdd:COG2885   159 ALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAkaaldELAALLKENPDL--RIEIEGHTDSRGSDAYN 236
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1174463157 186 AKIALGRAMAARKFLIDHGISTDKIKVSSQADGDFAATNNTTQGRAFNRRVEFEFVNT 243
Cdd:COG2885   237 LALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
138-240 6.76e-18

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 76.82  E-value: 6.76e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 138 IVQVSFPTGSTALKPSA-----EIAQVLIAAGKAAnvVNVRGRTDSKvaGALYAKIALG--RAMAARKFLIDHGISTDKI 210
Cdd:cd07185     1 LITIYFDFGSAELTPEAkplldKLAEVLKKNPDAK--IRIEGHTDSR--GSDAYNQELSerRAEAVADYLVSKGVDASRI 76
                          90       100       110
                  ....*....|....*....|....*....|
gi 1174463157 211 KVSSQADGDFAATNNTTQGRAFNRRVEFEF 240
Cdd:cd07185    77 TAVGYGESRPIASNDTEEGRAKNRRVEIVI 106
MotB COG1360
Flagellar motor protein MotB [Cell motility];
140-238 1.18e-15

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 72.57  E-value: 1.18e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 140 QVSFPTGSTALKPSA-----EIAQVLiaaGKAANVVNVRGRTDSK-VAGALYA---KIALGRAMAARKFLIDHGISTDKI 210
Cdd:COG1360    60 RVLFDSGSAELTPEGrelldKIAAVL---AEVPNRIRVEGHTDNVpISTARFPsnwELSAARAAAVVRYLIEGGVPPERL 136
                          90       100
                  ....*....|....*....|....*...
gi 1174463157 211 KVSSQADGDFAATNNTTQGRAFNRRVEF 238
Cdd:COG1360   137 SAVGYGDTRPLAPNDTPEGRARNRRVEI 164
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
31-243 2.97e-13

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 68.27  E-value: 2.97e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157  31 GASPDYGNTTTTRVFSTPATKAPTQAPPSTNGGDVVKRATDEITAAKPKPGDDDVVALLKLCESQLEKTRYLFDAASKNP 110
Cdd:COG2885    79 SATAAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAA 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 111 QSTGEELFNVYQRLDGIEDRMVTASAAIVQVSFPTGSTALKPSA-----EIAQVLIAAGKAanVVNVRGRTDSKVAGALY 185
Cdd:COG2885   159 ALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAkaaldELAALLKENPDL--RIEIEGHTDSRGSDAYN 236
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1174463157 186 AKIALGRAMAARKFLIDHGISTDKIKVSSQADGDFAATNNTTQGRAFNRRVEFEFVNT 243
Cdd:COG2885   237 LALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
143-233 6.70e-11

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 57.37  E-value: 6.70e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 143 FPTGSTALKPSAEIAQVLIAA----GKAANVVNVRGRTDSKVAGALYAKIALGRAMAARKFLIDHGISTDKIKVSSQADG 218
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADllkfPELKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80
                          90
                  ....*....|....*
gi 1174463157 219 DFAATNNTTQGRAFN 233
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
PRK10510 PRK10510
OmpA family lipoprotein;
141-237 2.86e-09

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 55.65  E-value: 2.86e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 141 VSFPTGSTALKPSAE-----IAQVLIAAGKAAnvVNVRGRTDSKVAGALYAKIALGRAMAARKFLIDHGISTDKIKVSSQ 215
Cdd:PRK10510  114 VTFDSSSATLKPAGAntltgVAMVLKEYPKTA--VNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGM 191
                          90       100
                  ....*....|....*....|..
gi 1174463157 216 ADGDFAATNNTTQGRAFNRRVE 237
Cdd:PRK10510  192 GPANPIASNSTAEGKAQNRRVE 213
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
143-237 1.64e-06

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 46.53  E-value: 1.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 143 FPTGSTALKPS-----AEIAQVLIAAGKAANVVnvrGRTDSK-VAGALYA---KIALGRAMAARKFLIDHGISTDKIKVS 213
Cdd:TIGR03350  34 FASGSAEVRAEfepllLRIAKALAAVPGRITVV---GHTDNVpIRTARFPsnwHLSEARAKAVADVLAQAGGPAGRVRAE 110
                          90       100
                  ....*....|....*....|....
gi 1174463157 214 SQADGDFAATNNTTQGRAFNRRVE 237
Cdd:TIGR03350 111 GRGDSEPIASNATAAGRARNRRVE 134
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
138-240 6.76e-18

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 76.82  E-value: 6.76e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 138 IVQVSFPTGSTALKPSA-----EIAQVLIAAGKAAnvVNVRGRTDSKvaGALYAKIALG--RAMAARKFLIDHGISTDKI 210
Cdd:cd07185     1 LITIYFDFGSAELTPEAkplldKLAEVLKKNPDAK--IRIEGHTDSR--GSDAYNQELSerRAEAVADYLVSKGVDASRI 76
                          90       100       110
                  ....*....|....*....|....*....|
gi 1174463157 211 KVSSQADGDFAATNNTTQGRAFNRRVEFEF 240
Cdd:cd07185    77 TAVGYGESRPIASNDTEEGRAKNRRVEIVI 106
MotB COG1360
Flagellar motor protein MotB [Cell motility];
140-238 1.18e-15

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 72.57  E-value: 1.18e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 140 QVSFPTGSTALKPSA-----EIAQVLiaaGKAANVVNVRGRTDSK-VAGALYA---KIALGRAMAARKFLIDHGISTDKI 210
Cdd:COG1360    60 RVLFDSGSAELTPEGrelldKIAAVL---AEVPNRIRVEGHTDNVpISTARFPsnwELSAARAAAVVRYLIEGGVPPERL 136
                          90       100
                  ....*....|....*....|....*...
gi 1174463157 211 KVSSQADGDFAATNNTTQGRAFNRRVEF 238
Cdd:COG1360   137 SAVGYGDTRPLAPNDTPEGRARNRRVEI 164
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
31-243 2.97e-13

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 68.27  E-value: 2.97e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157  31 GASPDYGNTTTTRVFSTPATKAPTQAPPSTNGGDVVKRATDEITAAKPKPGDDDVVALLKLCESQLEKTRYLFDAASKNP 110
Cdd:COG2885    79 SATAAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAA 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 111 QSTGEELFNVYQRLDGIEDRMVTASAAIVQVSFPTGSTALKPSA-----EIAQVLIAAGKAanVVNVRGRTDSKVAGALY 185
Cdd:COG2885   159 ALDAAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAkaaldELAALLKENPDL--RIEIEGHTDSRGSDAYN 236
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1174463157 186 AKIALGRAMAARKFLIDHGISTDKIKVSSQADGDFAATNNTTQGRAFNRRVEFEFVNT 243
Cdd:COG2885   237 LALSERRAEAVKDYLVSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVLKK 294
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
143-233 6.70e-11

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 57.37  E-value: 6.70e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 143 FPTGSTALKPSAEIAQVLIAA----GKAANVVNVRGRTDSKVAGALYAKIALGRAMAARKFLIDHGISTDKIKVSSQADG 218
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADllkfPELKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80
                          90
                  ....*....|....*
gi 1174463157 219 DFAATNNTTQGRAFN 233
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
PRK10510 PRK10510
OmpA family lipoprotein;
141-237 2.86e-09

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 55.65  E-value: 2.86e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 141 VSFPTGSTALKPSAE-----IAQVLIAAGKAAnvVNVRGRTDSKVAGALYAKIALGRAMAARKFLIDHGISTDKIKVSSQ 215
Cdd:PRK10510  114 VTFDSSSATLKPAGAntltgVAMVLKEYPKTA--VNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGM 191
                          90       100
                  ....*....|....*....|..
gi 1174463157 216 ADGDFAATNNTTQGRAFNRRVE 237
Cdd:PRK10510  192 GPANPIASNSTAEGKAQNRRVE 213
motB PRK08457
flagellar motor protein MotB; Reviewed
67-240 8.39e-08

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 51.64  E-value: 8.39e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157  67 KRATDEITAAKPKPGDDDVVallklcESQLEKTRYLFDAASKNPQSTGEELFNVYQRLDGIEDRM---VTASAAIVQVSF 143
Cdd:PRK08457   62 PEVKQPVKVIPPDSGDAEEE------MDELKSLKASQNTQQETIERRKGEGGALDQIDNGIALKLpskLLFENGSAEIIN 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 144 PTGSTALKPSAEIAQVLiaagkAANV-VNVRGRTD-SKVAGALYAK---IALGRAMAARKFLIDHGISTDKIKVSSQADG 218
Cdd:PRK08457  136 ADMMDYLKRIAKIITKL-----PKQVkINVRGYTDnSPLNKSRYKDhyeLAAARAYNVMKVLIQYGINPNRLSFSSYGSN 210
                         170       180
                  ....*....|....*....|..
gi 1174463157 219 DFAATNNTTQGRAFNRRVEFEF 240
Cdd:PRK08457  211 NPIAPNDSLENRLKNNRVEIFF 232
PRK07033 PRK07033
DotU family type VI secretion system protein;
143-237 2.25e-07

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 51.20  E-value: 2.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 143 FPTGSTALKPSAE--IAQVLIAAGKAANVVNVRGRTDSK-VAGALYA---KIALGRAMAARKFLIDHGISTDKIKVSSQA 216
Cdd:PRK07033  318 FASASTSVRDRYQpvLARVADALNQVKGNVLVTGYSDNVpIRTARFPsnwELSQARAQAVRALLAARLGQPERVTAEGRG 397
                          90       100
                  ....*....|....*....|.
gi 1174463157 217 DGDFAATNNTTQGRAFNRRVE 237
Cdd:PRK07033  398 DSDPVAPNDSAENRARNRRVE 418
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
143-237 1.64e-06

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 46.53  E-value: 1.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 143 FPTGSTALKPS-----AEIAQVLIAAGKAANVVnvrGRTDSK-VAGALYA---KIALGRAMAARKFLIDHGISTDKIKVS 213
Cdd:TIGR03350  34 FASGSAEVRAEfepllLRIAKALAAVPGRITVV---GHTDNVpIRTARFPsnwHLSEARAKAVADVLAQAGGPAGRVRAE 110
                          90       100
                  ....*....|....*....|....
gi 1174463157 214 SQADGDFAATNNTTQGRAFNRRVE 237
Cdd:TIGR03350 111 GRGDSEPIASNATAAGRARNRRVE 134
PRK08126 PRK08126
hypothetical protein; Provisional
143-237 1.38e-05

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 45.84  E-value: 1.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 143 FPTGSTALKPSAE--IAQVliaAGKAANV---VNVRGRTDSK-VAGALYA-KIALG--RAMAARKFLIDHGISTDKIKVS 213
Cdd:PRK08126  327 FVPGQATVNPAMGplIAKI---AREIARVggkVTVTGHTDNQpIRSAQFAsNLVLSekRAAQVAQMLQSAGVPASRLEAV 403
                          90       100
                  ....*....|....*....|....
gi 1174463157 214 SQADGDFAATNNTTQGRAFNRRVE 237
Cdd:PRK08126  404 GKGDAQPVADNRTPQGRAQNRRVE 427
motB PRK08944
flagellar motor protein MotB; Reviewed
142-237 1.40e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 45.39  E-value: 1.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 142 SFPTGSTALKPS-----AEIAQVLiaagkaANV---VNVRGRTD-SKVAGALYA---KIALGRAMA-ARKFLIDHGISTD 208
Cdd:PRK08944  182 SFPSGSAFLQPKfkpvvRKIGELL------KDVpgiITVSGHTDnVPISSELYRsnwDLSSARAVAvAHELLKVKGFDPQ 255
                          90       100
                  ....*....|....*....|....*....
gi 1174463157 209 KIKVSSQADGDFAATNNTTQGRAFNRRVE 237
Cdd:PRK08944  256 RLKVVGMADTQPLVPNDTAENRARNRRVE 284
PRK09039 PRK09039
peptidoglycan -binding protein;
129-240 1.68e-05

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 45.34  E-value: 1.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 129 DRMVTASaaivQVSFPTGSTALKPS--AEIAQVL-----IAAGKAAN---VVNVRGRTDSK--VAGALYA---KIALGRA 193
Cdd:PRK09039  218 DRFVFQS----EVLFPTGSAELNPEgqAEIAKLAaalieLAKEIPPEinwVLRVDGHTDNVplSGTGRFRdnwELSSARA 293
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1174463157 194 MAARKFLIDHGISTDKikVSSQADGDFA--ATNNTTQGRAFNRRVEFEF 240
Cdd:PRK09039  294 ISVVKFLIALGVPADR--LAAAGFGEFQplDPGDTPEARARNRRIELKL 340
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
143-236 7.41e-03

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 36.91  E-value: 7.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1174463157 143 FPTGSTALKPSAE-----IAQVLiaaGKAANVVNVRGRTDS-KVAGALYA---KIALGRAMAARKFLIDHGISTDKIKVS 213
Cdd:PRK09038  137 FGSGDAMLSDQAFailekVAEVL---KPAPNPIHVEGFTDNvPIATAQFPsnwELSAARAASVVRLLADDGVAPSRLAAV 213
                          90       100
                  ....*....|....*....|...
gi 1174463157 214 SQADGDFAATNNTTQGRAFNRRV 236
Cdd:PRK09038  214 GYGEFQPVADNDTAEGRARNRRV 236
motB PRK06667
flagellar motor protein MotB; Validated
192-237 7.83e-03

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 36.70  E-value: 7.83e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1174463157 192 RAMAARKFLIDHG-ISTDKIKVSSQADGDFAATNNTTQGRAFNRRVE 237
Cdd:PRK06667  189 RAVNMLEYILNYGdQSESWFQVSGFAGSRPLATEDTPEGRAYNRRID 235
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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