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Conserved domains on  [gi|1173200719|ref|WP_081091329|]
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TIR domain-containing protein [Micrococcus luteus]

Protein Classification

COG4271 family protein( domain architecture ID 11468183)

COG4271 family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG4271 COG4271
Predicted nucleotide-binding protein containing TIR -like domain [General function prediction ...
138-279 7.39e-47

Predicted nucleotide-binding protein containing TIR -like domain [General function prediction only];


:

Pssm-ID: 443412  Cd Length: 153  Bit Score: 153.90  E-value: 7.39e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173200719 138 IFLVHGHDLARRETVRHFLSTvTDRDIIVLANQPNRGQDLLGKLLSHAQQAAFAVVLLTPDDEGKPRESENNRARARQNV 217
Cdd:COG4271    10 VFIVHGRDSLVAEALARLLEK-LGLEPIIWNEQFNAGRTIIEKLEEASDQVDFAIVLMTPDDEGRLRGELVGQPRARQNV 88
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1173200719 218 VFELGLFIGILGRDRVAALNHPSVEIPTDFSGVAYISIEG---EGWQIELARELKAAGIDVSLDK 279
Cdd:COG4271    89 IFELGLFIGRLGRERVLLLKEGGVELPSDLAGVTYIRFDGgriGAWKIELARELKAAGIRIDINK 153
 
Name Accession Description Interval E-value
COG4271 COG4271
Predicted nucleotide-binding protein containing TIR -like domain [General function prediction ...
138-279 7.39e-47

Predicted nucleotide-binding protein containing TIR -like domain [General function prediction only];


Pssm-ID: 443412  Cd Length: 153  Bit Score: 153.90  E-value: 7.39e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173200719 138 IFLVHGHDLARRETVRHFLSTvTDRDIIVLANQPNRGQDLLGKLLSHAQQAAFAVVLLTPDDEGKPRESENNRARARQNV 217
Cdd:COG4271    10 VFIVHGRDSLVAEALARLLEK-LGLEPIIWNEQFNAGRTIIEKLEEASDQVDFAIVLMTPDDEGRLRGELVGQPRARQNV 88
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1173200719 218 VFELGLFIGILGRDRVAALNHPSVEIPTDFSGVAYISIEG---EGWQIELARELKAAGIDVSLDK 279
Cdd:COG4271    89 IFELGLFIGRLGRERVLLLKEGGVELPSDLAGVTYIRFDGgriGAWKIELARELKAAGIRIDINK 153
TIR-like pfam10137
Predicted nucleotide-binding protein containing TIR-like domain; Members of this family of ...
138-257 5.93e-36

Predicted nucleotide-binding protein containing TIR-like domain; Members of this family of bacterial nucleotide-binding proteins contain a TIR-like domain. Their exact function has not, as yet, been defined.


Pssm-ID: 431080  Cd Length: 120  Bit Score: 124.58  E-value: 5.93e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173200719 138 IFLVHGHDLARRETVRHFLSTVtDRDIIVLANQPNRGQDLLG-KLLSHAQQAAFAVVLLTPDDEGKpRESENNRARARQN 216
Cdd:pfam10137   2 VFIVHGEDLDAALEVKRFLEKL-GLEPIIWHEGTFKGSPTIIeKLEEASSQVDFAIVLFTPDDIVR-SRGEELQPRARDN 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1173200719 217 VVFELGLFIGILGRDRVAALNHPSVEIPTDFSGVAYISIEG 257
Cdd:pfam10137  80 VIFELGLFIGKLGRNRVIILRKGGVELPSDLAGITYIRFDD 120
 
Name Accession Description Interval E-value
COG4271 COG4271
Predicted nucleotide-binding protein containing TIR -like domain [General function prediction ...
138-279 7.39e-47

Predicted nucleotide-binding protein containing TIR -like domain [General function prediction only];


Pssm-ID: 443412  Cd Length: 153  Bit Score: 153.90  E-value: 7.39e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173200719 138 IFLVHGHDLARRETVRHFLSTvTDRDIIVLANQPNRGQDLLGKLLSHAQQAAFAVVLLTPDDEGKPRESENNRARARQNV 217
Cdd:COG4271    10 VFIVHGRDSLVAEALARLLEK-LGLEPIIWNEQFNAGRTIIEKLEEASDQVDFAIVLMTPDDEGRLRGELVGQPRARQNV 88
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1173200719 218 VFELGLFIGILGRDRVAALNHPSVEIPTDFSGVAYISIEG---EGWQIELARELKAAGIDVSLDK 279
Cdd:COG4271    89 IFELGLFIGRLGRERVLLLKEGGVELPSDLAGVTYIRFDGgriGAWKIELARELKAAGIRIDINK 153
TIR-like pfam10137
Predicted nucleotide-binding protein containing TIR-like domain; Members of this family of ...
138-257 5.93e-36

Predicted nucleotide-binding protein containing TIR-like domain; Members of this family of bacterial nucleotide-binding proteins contain a TIR-like domain. Their exact function has not, as yet, been defined.


Pssm-ID: 431080  Cd Length: 120  Bit Score: 124.58  E-value: 5.93e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1173200719 138 IFLVHGHDLARRETVRHFLSTVtDRDIIVLANQPNRGQDLLG-KLLSHAQQAAFAVVLLTPDDEGKpRESENNRARARQN 216
Cdd:pfam10137   2 VFIVHGEDLDAALEVKRFLEKL-GLEPIIWHEGTFKGSPTIIeKLEEASSQVDFAIVLFTPDDIVR-SRGEELQPRARDN 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1173200719 217 VVFELGLFIGILGRDRVAALNHPSVEIPTDFSGVAYISIEG 257
Cdd:pfam10137  80 VIFELGLFIGKLGRNRVIILRKGGVELPSDLAGITYIRFDD 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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