NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1140884022|ref|WP_076736267|]
View 

phage tail protein [Cronobacter sakazakii]

Protein Classification

phage tail protein( domain architecture ID 10536432)

phage tail protein such as Escherichia virus P2 tail completion protein R (GpR), which is essential for stable head joining

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
P2_Phage_GpR pfam06891
P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion ...
 1-126 1.35e-56

P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion protein R (GpR) like sequences. GpR is thought to be a tail completion protein which is essential for stable head joining.


:

Pssm-ID: 429177  Cd Length: 131  Bit Score: 173.22  E-value: 1.35e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140884022   1 MKKPESLRKALTDALPVLRTNPDMLRLFIDNGQIAATLAASLSFENRYTLNVVVTDYTGDINLLLVPVAAWLRENQPDIM 80
Cdd:pfam06891   1 MLKPQSLRAALTAALPQLAANPDKLDVFVDEGSIVATGAGSLSFEYRYTLVLIIEDYPGDPDLLMAPVLAWLRENQPDLL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1140884022  81 TTDDGMKKGFTWYADINNDSSVDVSISLLISERTLVKE-SDGALYVT 126
Cdd:pfam06891  81 ANPDLRLKGITFDADILDDDTADLSISLQLTERVIVKEdEDGELTVT 127
 
Name Accession Description Interval E-value
P2_Phage_GpR pfam06891
P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion ...
 1-126 1.35e-56

P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion protein R (GpR) like sequences. GpR is thought to be a tail completion protein which is essential for stable head joining.


Pssm-ID: 429177  Cd Length: 131  Bit Score: 173.22  E-value: 1.35e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140884022   1 MKKPESLRKALTDALPVLRTNPDMLRLFIDNGQIAATLAASLSFENRYTLNVVVTDYTGDINLLLVPVAAWLRENQPDIM 80
Cdd:pfam06891   1 MLKPQSLRAALTAALPQLAANPDKLDVFVDEGSIVATGAGSLSFEYRYTLVLIIEDYPGDPDLLMAPVLAWLRENQPDLL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1140884022  81 TTDDGMKKGFTWYADINNDSSVDVSISLLISERTLVKE-SDGALYVT 126
Cdd:pfam06891  81 ANPDLRLKGITFDADILDDDTADLSISLQLTERVIVKEdEDGELTVT 127
 
Name Accession Description Interval E-value
P2_Phage_GpR pfam06891
P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion ...
 1-126 1.35e-56

P2 phage tail completion protein R (GpR); This family consists of P2 phage tail completion protein R (GpR) like sequences. GpR is thought to be a tail completion protein which is essential for stable head joining.


Pssm-ID: 429177  Cd Length: 131  Bit Score: 173.22  E-value: 1.35e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1140884022   1 MKKPESLRKALTDALPVLRTNPDMLRLFIDNGQIAATLAASLSFENRYTLNVVVTDYTGDINLLLVPVAAWLRENQPDIM 80
Cdd:pfam06891   1 MLKPQSLRAALTAALPQLAANPDKLDVFVDEGSIVATGAGSLSFEYRYTLVLIIEDYPGDPDLLMAPVLAWLRENQPDLL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1140884022  81 TTDDGMKKGFTWYADINNDSSVDVSISLLISERTLVKE-SDGALYVT 126
Cdd:pfam06891  81 ANPDLRLKGITFDADILDDDTADLSISLQLTERVIVKEdEDGELTVT 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH