type VI secretion system (T6SS) contractile sheath large subunit forms a long contractile organelle in V. cholerae and in E. coli, suggesting that sheath contraction powers the secretion
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family ...
2-433
0e+00
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family [Intracellular trafficking, secretion, and vesicular transport];
:
Pssm-ID: 442739 [Multi-domain] Cd Length: 474 Bit Score: 783.59 E-value: 0e+00
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family ...
2-433
0e+00
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442739 [Multi-domain] Cd Length: 474 Bit Score: 783.59 E-value: 0e+00
type VI secretion protein, EvpB/VC_A0108 family; Work by Mougous, et al. (2006), describes ...
1-432
0e+00
type VI secretion protein, EvpB/VC_A0108 family; Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274538 [Multi-domain] Cd Length: 473 Bit Score: 743.72 E-value: 0e+00
EvpB/VC_A0108, tail sheath N-terminal domain; EvpB is a family of Gram-negative probable type ...
11-311
4.05e-180
EvpB/VC_A0108, tail sheath N-terminal domain; EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell.
Pssm-ID: 428683 Cd Length: 301 Bit Score: 504.35 E-value: 4.05e-180
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family ...
2-433
0e+00
Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442739 [Multi-domain] Cd Length: 474 Bit Score: 783.59 E-value: 0e+00
type VI secretion protein, EvpB/VC_A0108 family; Work by Mougous, et al. (2006), describes ...
1-432
0e+00
type VI secretion protein, EvpB/VC_A0108 family; Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274538 [Multi-domain] Cd Length: 473 Bit Score: 743.72 E-value: 0e+00
EvpB/VC_A0108, tail sheath N-terminal domain; EvpB is a family of Gram-negative probable type ...
11-311
4.05e-180
EvpB/VC_A0108, tail sheath N-terminal domain; EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell.
Pssm-ID: 428683 Cd Length: 301 Bit Score: 504.35 E-value: 4.05e-180
EvpB/VC_A0108, tail sheath gpW/gp25-like domain; EvpB is a family of Gram-negative probable ...
321-431
3.74e-56
EvpB/VC_A0108, tail sheath gpW/gp25-like domain; EvpB is a family of Gram-negative probable type VI secretion system components of the tail sheath. They have been known as COG:COG3517. These sheath-components, of which there are many copies in the sheath, are also variously referred to as VipA/VipB and TssB/TssC. On contact with another bacterial cell the sheath contracts and pushes the puncturing device and tube through the cell envelope and punches the target bacterial cell. This entry represents the gpW/gp25-like domain.
Pssm-ID: 436852 [Multi-domain] Cd Length: 111 Bit Score: 181.15 E-value: 3.74e-56
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.
The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
Click on the domain model's accession number to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.
To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page,
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
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specific hits meet or exceed a domain-specific e-value threshold
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Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool
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