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Conserved domains on  [gi|1128821533|ref|WP_075262240|]
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MULTISPECIES: Hok/Gef family protein [Photorhabdus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HOK_GEF super family cl27487
Hok/gef family;
3-46 1.49e-15

Hok/gef family;


The actual alignment was detected with superfamily member PRK09759:

Pssm-ID: 452751  Cd Length: 50  Bit Score: 62.64  E-value: 1.49e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1128821533  3 PQKIVIFSLIVICVTLLLFTWITRGSLCKLHIKRGNTEVAAIMA 46
Cdd:PRK09759   2 PQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLA 45
 
Name Accession Description Interval E-value
PRK09759 PRK09759
type I toxin-antitoxin system toxin HokA;
3-46 1.49e-15

type I toxin-antitoxin system toxin HokA;


Pssm-ID: 182063  Cd Length: 50  Bit Score: 62.64  E-value: 1.49e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1128821533  3 PQKIVIFSLIVICVTLLLFTWITRGSLCKLHIKRGNTEVAAIMA 46
Cdd:PRK09759   2 PQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLA 45
HOK_GEF pfam01848
Hok/gef family;
8-47 1.00e-11

Hok/gef family;


Pssm-ID: 426473  Cd Length: 41  Bit Score: 52.76  E-value: 1.00e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 1128821533  8 IFSLIVICVTLLLFTWITRGSLCKLHIKRGNTEVAAIMAY 47
Cdd:pfam01848  2 LVALIVICITVLLFTLVTRKSLCELRIRQGQTEVAAFLAC 41
 
Name Accession Description Interval E-value
PRK09759 PRK09759
type I toxin-antitoxin system toxin HokA;
3-46 1.49e-15

type I toxin-antitoxin system toxin HokA;


Pssm-ID: 182063  Cd Length: 50  Bit Score: 62.64  E-value: 1.49e-15
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1128821533  3 PQKIVIFSLIVICVTLLLFTWITRGSLCKLHIKRGNTEVAAIMA 46
Cdd:PRK09759   2 PQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQGSYELAAFLA 45
PRK09738 PRK09738
small toxic polypeptide; Provisional
 3-49 5.72e-13

small toxic polypeptide; Provisional


Pssm-ID: 182055  Cd Length: 52  Bit Score: 55.95  E-value: 5.72e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 1128821533  3 PQKIVIFSLIVICVTLLLFTWITRGSLCKLHIKRGNTEVAAIMAYES 49
Cdd:PRK09738   4 PRSPLVWCVLIVCLTLLIFTYLTRKSLCELRYRDGDREVAAFMAYES 50
HOK_GEF pfam01848
Hok/gef family;
8-47 1.00e-11

Hok/gef family;


Pssm-ID: 426473  Cd Length: 41  Bit Score: 52.76  E-value: 1.00e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 1128821533  8 IFSLIVICVTLLLFTWITRGSLCKLHIKRGNTEVAAIMAY 47
Cdd:pfam01848  2 LVALIVICITVLLFTLVTRKSLCELRIRQGQTEVAAFLAC 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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