|
Name |
Accession |
Description |
Interval |
E-value |
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
12-568 |
0e+00 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 917.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 12 GFIRRLVEEGLVTAENMQQAIVAARKAETDIVPYLIQQLQISPLTIAEKISYEFGEPIFDLAVYDSRLIVREGLDEKLFT 91
Cdd:TIGR02538 1 GLGRILVKAGLLTETQAQAALEEAQASGQPLVQYLIQNGLLDPKQLAEFLSREFGVPLLDLNAFDPDALPVQLVSEELIQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 92 KYRILPIFRRHNQLYIATSNPTNIEAIDAIRFNSKLNIEVVIVEHDKLERLIEQNFTEDSTFDFD-EDFDLEVGDNAPET 170
Cdd:TIGR02538 81 KHQALPLFKRGNTLFVAVSDPTNISALDDIRFATGLNVEVVIVEEDKLSALIEKYYGGSDSLAKElGDEDIGDLEELDVD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 171 QEDDDEPQ-------GDEAPIVKYINKLLVDAIRMGASDLHFEPYEKSYRVRYRIDGVLRQIANPPLQLATRLASRLKVM 243
Cdd:TIGR02538 161 AIDDEGPDdieqdavDDDAPIVKFVNKILLDAIRKGASDIHFEPYEKSYRVRFRIDGILHEVAQPPLALANRIAARIKVM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 244 SQMDISEKRIPQDGRIKLKLSKNKAIDFRVNSLPTLFGEKIVLRILDPSSAMLGIDALGYEPEQKELFMEALDKPQGMLL 323
Cdd:TIGR02538 241 SRLDIAEKRIPQDGRIKLKLSKSKAIDFRVSTLPTLFGEKVVLRILDSSAAQLDIDKLGFEPDQKALFLEAIHKPQGMVL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 324 ITGPTGSGKTVSLYTGLNILNREDTNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIVMVGEIRDLETA 403
Cdd:TIGR02538 321 VTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 404 EIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCQKCKAPVEIPRQSLLELGFTEEDL 483
Cdd:TIGR02538 401 EIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLIMAQRLARRLCSHCKAPEEVPAEALLELGFTQEDL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 484 nqPEFQLYQPVGCPECR-EGYKGRVGVYEVMKVTPEISRIIMEDGNALQIAAASAKSGFNNLRRSGLIKVMQGVTSLQEV 562
Cdd:TIGR02538 481 --ADLKLYGPVGCDECSnTGYKGRVGIYEVMPMSEEIAELILKGGNALQIAELAQKEGMRTLRRSGLLKVKQGVTSLEEV 558
|
....*.
gi 1126529351 563 NRVTSE 568
Cdd:TIGR02538 559 LRVTVD 564
|
|
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
12-568 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 794.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 12 GFIRRLVEEGLVTAENMQQAIVAARKAETDIVPYLIQQLQISPLTIAEKISYEFGEPIFDLAVYDSRLIVREGLDEKLFT 91
Cdd:COG2804 8 RLGDLLVEAGLISEEQLLAALAEQKKTGKPLGELLVELGLVTEELLAEALAEQLGLPFVDLDELEIDPEVLELLPEELAR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 92 KYRILPIFRRHNQLYIATSNPTNIEAIDAIRFNSKLNIEVVIVEHDKLERLIEQNFTEDSTFDfDEDFDLEVGDNAPETQ 171
Cdd:COG2804 88 RHRVLPLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGSESSIE-ELLEELAEDLTSEEED 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 172 EDDDEPQGDEAPIVKYINKLLVDAIRMGASDLHFEPYEKSYRVRYRIDGVLRQIANPPLQLATRLASRLKVMSQMDISEK 251
Cdd:COG2804 167 LEDLLEEADDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLAPALVSRIKIMANLDIAER 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 252 RIPQDGRIKLKLSkNKAIDFRVNSLPTLFGEKIVLRILDPSSAMLGIDALGYEPEQKELFMEALDKPQGMLLITGPTGSG 331
Cdd:COG2804 247 RLPQDGRIKLRLG-GREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRLIRRPHGIILVTGPTGSG 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 332 KTVSLYTGLNILNREDTNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIVMVGEIRDLETAEIAIKAAQ 411
Cdd:COG2804 326 KTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMVGEIRDLETAEIAVQAAL 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 412 TGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCQKCKAPVEIPRQSLLELGFTEEDLNqpEFQLY 491
Cdd:COG2804 406 TGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPDPEELERLGLPPEELA--PLTFY 483
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1126529351 492 QPVGCPECRE-GYKGRVGVYEVMKVTPEISRIIMEDGNALQIAAASAKSGFNNLRRSGLIKVMQGVTSLQEVNRVTSE 568
Cdd:COG2804 484 RGVGCEHCNGtGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEGMRTLREDGLEKVLQGITTLEEVLRVTGE 561
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
92-566 |
4.77e-171 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 492.91 E-value: 4.77e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 92 KYRILPIFRRHNQLYIATSNPTNIEAIDAIRFNSKLNIEVVIVEHDKLERLIEQnftedstfdfdedfdleVGDNAPETQ 171
Cdd:PRK10436 15 RYQAVLLDSDEETLHVAVVDAPSHELLDALRFATGKRIEIECWPRAQMEQHLQR-----------------TQQTLPVAD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 172 EDDDepqgdeAPIVKYINKLLVDAIRMGASDLHFEPYEKSYRVRYRIDGVLRQIANPPLQLATRLASRLKVMSQMDISEK 251
Cdd:PRK10436 78 QEKD------TPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAER 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 252 RIPQDGRIKLKLSKNkAIDFRVNSLPTLFGEKIVLRILDPSSAMLGIDALGYEPEQKELFMEALDKPQGMLLITGPTGSG 331
Cdd:PRK10436 152 RLPQDGQFTVELAGN-AYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 332 KTVSLYTGLNILNREDTNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIVMVGEIRDLETAEIAIKAAQ 411
Cdd:PRK10436 231 KTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQ 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 412 TGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCQKCK----APVEIPrqsllelgfteEDLNQPE 487
Cdd:PRK10436 311 TGHLVLSTLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRqqasEPIHLP-----------PNIWPGP 379
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1126529351 488 FQLYQPVGCPECREGYKGRVGVYEVMKVTPEISRIIMEDGNALQIAAASAKSGFNNLRRSGLIKVMQGVTSLQEVNRVT 566
Cdd:PRK10436 380 LPHWQAVGCEHCYHGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGMTTLFENGLLAVEQGLTTLEELYRVL 458
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
189-458 |
6.92e-139 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 403.20 E-value: 6.92e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 189 NKLLVDAIRMGASDLHFEPYEKSYRVRYRIDGVLRQIANPPLQLATRLASRLKVMSQMDISEKRIPQDGRIKLKLsKNKA 268
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRI-GGKG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 269 IDFRVNSLPTLFGEKIVLRILDPSSAMLGIDALGYEPEQKELFMEALDKPQGMLLITGPTGSGKTVSLYTGLNILNREDT 348
Cdd:pfam00437 80 VRVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 349 NISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIVMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPET 428
Cdd:pfam00437 160 NIVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGA 239
|
250 260 270
....*....|....*....|....*....|
gi 1126529351 429 LTRLRNMGVPSFNIATSVNLVIAQRLARRL 458
Cdd:pfam00437 240 LTRLQDMGVPPFELASSLLLVIAQRLVRKL 269
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
189-454 |
1.73e-90 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 279.33 E-value: 1.73e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 189 NKLLVDAIRMGASDLHFEPYEKSYRVRYRIDGVLRQIANPPLQLATRLASRLKVMSQMDISEKRIPQDGRIKLKLSKNKa 268
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQ- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 269 IDFRVNSLPTLFG-EKIVLRILDPSSAMLGIDalgYEPEQKELFMEALDKPQGMLLITGPTGSGKTVSLYTGLNILnRED 347
Cdd:NF041000 80 ISLRLSTVGDFLGrESLVIRLLYQLEQIKPQL---FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKL-ALN 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 348 TNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIVMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPE 427
Cdd:NF041000 156 KQVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAG 235
|
250 260
....*....|....*....|....*..
gi 1126529351 428 TLTRLRNMGVPSFNIATSVNLVIAQRL 454
Cdd:NF041000 236 VIYRLLELGISKEELEQTLIGISYQRL 262
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
309-457 |
1.21e-84 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 260.11 E-value: 1.21e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 309 ELFMEALDKPQGMLLITGPTGSGKTVSLYTGLNILNREDTNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQD 388
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1126529351 389 PDIVMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARR 457
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGR 149
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
12-568 |
0e+00 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 917.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 12 GFIRRLVEEGLVTAENMQQAIVAARKAETDIVPYLIQQLQISPLTIAEKISYEFGEPIFDLAVYDSRLIVREGLDEKLFT 91
Cdd:TIGR02538 1 GLGRILVKAGLLTETQAQAALEEAQASGQPLVQYLIQNGLLDPKQLAEFLSREFGVPLLDLNAFDPDALPVQLVSEELIQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 92 KYRILPIFRRHNQLYIATSNPTNIEAIDAIRFNSKLNIEVVIVEHDKLERLIEQNFTEDSTFDFD-EDFDLEVGDNAPET 170
Cdd:TIGR02538 81 KHQALPLFKRGNTLFVAVSDPTNISALDDIRFATGLNVEVVIVEEDKLSALIEKYYGGSDSLAKElGDEDIGDLEELDVD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 171 QEDDDEPQ-------GDEAPIVKYINKLLVDAIRMGASDLHFEPYEKSYRVRYRIDGVLRQIANPPLQLATRLASRLKVM 243
Cdd:TIGR02538 161 AIDDEGPDdieqdavDDDAPIVKFVNKILLDAIRKGASDIHFEPYEKSYRVRFRIDGILHEVAQPPLALANRIAARIKVM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 244 SQMDISEKRIPQDGRIKLKLSKNKAIDFRVNSLPTLFGEKIVLRILDPSSAMLGIDALGYEPEQKELFMEALDKPQGMLL 323
Cdd:TIGR02538 241 SRLDIAEKRIPQDGRIKLKLSKSKAIDFRVSTLPTLFGEKVVLRILDSSAAQLDIDKLGFEPDQKALFLEAIHKPQGMVL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 324 ITGPTGSGKTVSLYTGLNILNREDTNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIVMVGEIRDLETA 403
Cdd:TIGR02538 321 VTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 404 EIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCQKCKAPVEIPRQSLLELGFTEEDL 483
Cdd:TIGR02538 401 EIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLIMAQRLARRLCSHCKAPEEVPAEALLELGFTQEDL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 484 nqPEFQLYQPVGCPECR-EGYKGRVGVYEVMKVTPEISRIIMEDGNALQIAAASAKSGFNNLRRSGLIKVMQGVTSLQEV 562
Cdd:TIGR02538 481 --ADLKLYGPVGCDECSnTGYKGRVGIYEVMPMSEEIAELILKGGNALQIAELAQKEGMRTLRRSGLLKVKQGVTSLEEV 558
|
....*.
gi 1126529351 563 NRVTSE 568
Cdd:TIGR02538 559 LRVTVD 564
|
|
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
12-568 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 794.40 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 12 GFIRRLVEEGLVTAENMQQAIVAARKAETDIVPYLIQQLQISPLTIAEKISYEFGEPIFDLAVYDSRLIVREGLDEKLFT 91
Cdd:COG2804 8 RLGDLLVEAGLISEEQLLAALAEQKKTGKPLGELLVELGLVTEELLAEALAEQLGLPFVDLDELEIDPEVLELLPEELAR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 92 KYRILPIFRRHNQLYIATSNPTNIEAIDAIRFNSKLNIEVVIVEHDKLERLIEQNFTEDSTFDfDEDFDLEVGDNAPETQ 171
Cdd:COG2804 88 RHRVLPLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGSESSIE-ELLEELAEDLTSEEED 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 172 EDDDEPQGDEAPIVKYINKLLVDAIRMGASDLHFEPYEKSYRVRYRIDGVLRQIANPPLQLATRLASRLKVMSQMDISEK 251
Cdd:COG2804 167 LEDLLEEADDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLAPALVSRIKIMANLDIAER 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 252 RIPQDGRIKLKLSkNKAIDFRVNSLPTLFGEKIVLRILDPSSAMLGIDALGYEPEQKELFMEALDKPQGMLLITGPTGSG 331
Cdd:COG2804 247 RLPQDGRIKLRLG-GREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRLIRRPHGIILVTGPTGSG 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 332 KTVSLYTGLNILNREDTNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIVMVGEIRDLETAEIAIKAAQ 411
Cdd:COG2804 326 KTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMVGEIRDLETAEIAVQAAL 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 412 TGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCQKCKAPVEIPRQSLLELGFTEEDLNqpEFQLY 491
Cdd:COG2804 406 TGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPDPEELERLGLPPEELA--PLTFY 483
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1126529351 492 QPVGCPECRE-GYKGRVGVYEVMKVTPEISRIIMEDGNALQIAAASAKSGFNNLRRSGLIKVMQGVTSLQEVNRVTSE 568
Cdd:COG2804 484 RGVGCEHCNGtGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEGMRTLREDGLEKVLQGITTLEEVLRVTGE 561
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
92-566 |
4.07e-176 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 506.53 E-value: 4.07e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 92 KYRILPIFRRHNQLYIATSNPTNIEAIDAIRFNSKLNIEVVIVEHDKLERLIEQNF--TEDSTFDFDEDFDLEVGDNA-- 167
Cdd:TIGR02533 11 QSRVLPLSEHDGTLVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYarTGSAAAQIVEEIEGEDDLSAle 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 168 -PETQEDDDEPQGDEAPIVKYINKLLVDAIRMGASDLHFEPYEKSYRVRYRIDGVLRQIANPPLQLATRLASRLKVMSQM 246
Cdd:TIGR02533 91 lDEPKIEDLLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAALVSRVKIMAKL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 247 DISEKRIPQDGRIKLKLSkNKAIDFRVNSLPTLFGEKIVLRILDPSSAMLGIDALGYEPEQKELFMEALDKPQGMLLITG 326
Cdd:TIGR02533 171 NIAEKRLPQDGRISLRVG-GRDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPHGIILVTG 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 327 PTGSGKTVSLYTGLNILNREDTNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIVMVGEIRDLETAEIA 406
Cdd:TIGR02533 250 PTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIA 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 407 IKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCQKCKAPVEIPRQSLLELGFTEEDlnqp 486
Cdd:TIGR02533 330 IQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFGISPEG---- 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 487 EFQLYQPVGCPEC-REGYKGRVGVYEVMKVTPEISRIIMEDGNALQIAAASAKSGFNNLRRSGLIKVMQGVTSLQEVNRV 565
Cdd:TIGR02533 406 PINLYRPVGCPHCnHTGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARAAGMRTLRDDGLRKVLAGITTIEEVLRV 485
|
.
gi 1126529351 566 T 566
Cdd:TIGR02533 486 T 486
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
92-566 |
4.77e-171 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 492.91 E-value: 4.77e-171
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 92 KYRILPIFRRHNQLYIATSNPTNIEAIDAIRFNSKLNIEVVIVEHDKLERLIEQnftedstfdfdedfdleVGDNAPETQ 171
Cdd:PRK10436 15 RYQAVLLDSDEETLHVAVVDAPSHELLDALRFATGKRIEIECWPRAQMEQHLQR-----------------TQQTLPVAD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 172 EDDDepqgdeAPIVKYINKLLVDAIRMGASDLHFEPYEKSYRVRYRIDGVLRQIANPPLQLATRLASRLKVMSQMDISEK 251
Cdd:PRK10436 78 QEKD------TPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLGNLDIAER 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 252 RIPQDGRIKLKLSKNkAIDFRVNSLPTLFGEKIVLRILDPSSAMLGIDALGYEPEQKELFMEALDKPQGMLLITGPTGSG 331
Cdd:PRK10436 152 RLPQDGQFTVELAGN-AYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 332 KTVSLYTGLNILNREDTNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIVMVGEIRDLETAEIAIKAAQ 411
Cdd:PRK10436 231 KTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKAAQ 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 412 TGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCQKCK----APVEIPrqsllelgfteEDLNQPE 487
Cdd:PRK10436 311 TGHLVLSTLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRqqasEPIHLP-----------PNIWPGP 379
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1126529351 488 FQLYQPVGCPECREGYKGRVGVYEVMKVTPEISRIIMEDGNALQIAAASAKSGFNNLRRSGLIKVMQGVTSLQEVNRVT 566
Cdd:PRK10436 380 LPHWQAVGCEHCYHGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGMTTLFENGLLAVEQGLTTLEELYRVL 458
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
189-458 |
6.92e-139 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 403.20 E-value: 6.92e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 189 NKLLVDAIRMGASDLHFEPYEKSYRVRYRIDGVLRQIANPPLQLATRLASRLKVMSQMDISEKRIPQDGRIKLKLsKNKA 268
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRI-GGKG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 269 IDFRVNSLPTLFGEKIVLRILDPSSAMLGIDALGYEPEQKELFMEALDKPQGMLLITGPTGSGKTVSLYTGLNILNREDT 348
Cdd:pfam00437 80 VRVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 349 NISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIVMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPET 428
Cdd:pfam00437 160 NIVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGA 239
|
250 260 270
....*....|....*....|....*....|
gi 1126529351 429 LTRLRNMGVPSFNIATSVNLVIAQRLARRL 458
Cdd:pfam00437 240 LTRLQDMGVPPFELASSLLLVIAQRLVRKL 269
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
189-454 |
1.73e-90 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 279.33 E-value: 1.73e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 189 NKLLVDAIRMGASDLHFEPYEKSYRVRYRIDGVLRQIANPPLQLATRLASRLKVMSQMDISEKRIPQDGRIKLKLSKNKa 268
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNEQQ- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 269 IDFRVNSLPTLFG-EKIVLRILDPSSAMLGIDalgYEPEQKELFMEALDKPQGMLLITGPTGSGKTVSLYTGLNILnRED 347
Cdd:NF041000 80 ISLRLSTVGDFLGrESLVIRLLYQLEQIKPQL---FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKL-ALN 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 348 TNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIVMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPE 427
Cdd:NF041000 156 KQVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAG 235
|
250 260
....*....|....*....|....*..
gi 1126529351 428 TLTRLRNMGVPSFNIATSVNLVIAQRL 454
Cdd:NF041000 236 VIYRLLELGISKEELEQTLIGISYQRL 262
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
309-457 |
1.21e-84 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 260.11 E-value: 1.21e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 309 ELFMEALDKPQGMLLITGPTGSGKTVSLYTGLNILNREDTNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQD 388
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1126529351 389 PDIVMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARR 457
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGR 149
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
188-550 |
4.21e-65 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 215.73 E-value: 4.21e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 188 INKLLVDAIRMGASDLHFEPyekSYRVRYRIDGVLRQIANPPLQLATrLASRLKVMsqmdisekrIPQDGRIKLKlsKNK 267
Cdd:COG2805 5 LDELLKLAVEQGASDLHLTV---GSPPMLRIDGELVPLDDPPLTPED-LEALLKEI---------LTEEQRERLE--EEG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 268 AID----------FRVNSLPTLFGEKIVLRILdpSSAMLGIDALGYEPEqkelFMEALDKPQGMLLITGPTGSGKTVSLY 337
Cdd:COG2805 70 ELDfsyslpglgrFRVNIFRQRGGVAAVLRLI--PSEIPTLEELGLPPV----LKELAELPRGLVLVTGPTGSGKSTTLA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 338 TGLNILNREDT-NISTAEDPVEINLEG----INQVNVNPKVgLTFAAALKSFLRQDPDIVMVGEIRDLETAEIAIKAAQT 412
Cdd:COG2805 144 AMIDYINETRAkHIITIEDPIEFVHKHkkslINQREVGRDT-PSFANALRAALREDPDVILVGEMRDLETIEAALTAAET 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 413 GHMVMSTLHTNSAPETLTRL------------RNMgvpsfnIATSVNLVIAQRLarrlcqkckapveIPRqsllelgfte 480
Cdd:COG2805 223 GHLVFATLHTNSAAQTIDRIidvfppeeqaqiRSQ------LAESLRGVISQRL-------------LPR---------- 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 481 edlnqpefqlyqpvgcpecREGyKGRVGVYEVMKVTPEISRIIMEdGNALQIAAA---SAKSG---FN----NLRRSGLI 550
Cdd:COG2805 274 -------------------ADG-GGRVAAREILVNTPAVRNLIRE-GKTHQIPSLiqtGKKLGmqtMDqslaELVKEGLI 332
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
188-568 |
3.01e-53 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 184.45 E-value: 3.01e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 188 INKLLVDAIRMGASDLHFEPYEKsyrVRYRIDGVLRQIANPPLQLATRLASRLKVMSqmDISEKRIPQDGRIKLKLSKNK 267
Cdd:TIGR01420 2 LEEILREAVKLGASDIHLTAGAP---PAMRIDGDLVRIEFEPLTPEDTQKLAREILS--EKQREEFEENGELDFSFSLPG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 268 AIDFRVNSLPTLFGEKIVLRILdpSSAMLGIDALGYEPEQKELfmeaLDKPQGMLLITGPTGSGKTVSLYTGLNILNRE- 346
Cdd:TIGR01420 77 VGRFRVNAFYQRGGVALVLRLI--PSKIPTFEELGLPPVLREL----AERPRGLILVTGPTGSGKSTTLASMIDYINKNk 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 347 DTNISTAEDPVEINLEGINQVNVNPKVG---LTFAAALKSFLRQDPDIVMVGEIRDLETAEIAIKAAQTGHMVMSTLHTN 423
Cdd:TIGR01420 151 AYHIITIEDPIEYVHTNKRSLINQREVGedtLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTN 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 424 SAPETLTRL------------RNMgvpsfnIATSVNLVIAQRLarrlcqkckapveiprqsllelgfteedlnqpefqly 491
Cdd:TIGR01420 231 SAAQTIERIidvfpaeeqeqiRTQ------LAESLVAIISQRL------------------------------------- 267
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1126529351 492 qpvgCPecREGYKGRVGVYEVMKVTPEISRIIMEdGNALQIAAASAKSGfnnlrRSGLIKVMQGVTSLQEVNRVTSE 568
Cdd:TIGR01420 268 ----LP--KADGGGRVLAVEILINTPAVRNLIRE-GKTHQIKSLIQTGQ-----QLGMQTFDQHLAQLYKKGLITLE 332
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
295-532 |
3.10e-47 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 164.63 E-value: 3.10e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 295 MLGIDALGYEPEQKELFMealdKPQGMLLITGPTGSGKTVSLYTGLNILNRE-DTNISTAEDPVEINLEG----INQVNV 369
Cdd:cd01131 1 IPTFEELGLPPVLKDLAL----KPRGLVLVTGPTGSGKSTTLAAMIDYINETrSKHIITIEDPIEFVHKHkkslINQREV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 370 NPKVgLTFAAALKSFLRQDPDIVMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMgVPS-------FNI 442
Cdd:cd01131 77 GRDT-ESFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDV-FPPeqqeqvrIQL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 443 ATSVNLVIAQRLARrlcqkckapveiprqsllelgfteedlnqpefqlyqpvgcpecREGYKGRVGVYEVMKVTPEISRI 522
Cdd:cd01131 155 ASSLRGVISQRLLP-------------------------------------------KKDGGGRVAAFEILINTPAIRNL 191
|
250
....*....|
gi 1126529351 523 IMEdGNALQI 532
Cdd:cd01131 192 IRE-GKTHQI 200
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
320-458 |
2.67e-33 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 124.81 E-value: 2.67e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 320 GMLLITGPTGSGKTVSLYTGLNILNREDtNISTAEDPVEINL---EGINQVNVNPKVglTFAAALKSFLRQDPDIVMVGE 396
Cdd:cd19477 11 KNVIVCGGTGSGKTTYIKSILEFIPKEE-RIISIEDTEEIVFkhhKNYTQLFFGGNI--TSADCLKSCLRQRPDRIILGE 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1126529351 397 IRDlETAEIAIKAAQTGH-MVMSTLHTNSAPETLTRLRNMGVPS------------FNIATSVNLVIAQRLARRL 458
Cdd:cd19477 88 LRS-SEAYDFYNVLCSGHkGTLTTLHAGSSEEAFIRLAN*SSSNsaarnikfesliEGFKDLIDGIVHINHHKQC 161
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
188-468 |
1.02e-32 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 129.06 E-value: 1.02e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 188 INKLLVDAIRMGASDL----HFEPYeksyrvrYRIDGVLRQIANPPL--QLATRLASRlkVMS--QMDISEKR------- 252
Cdd:COG5008 3 LEDLLKLMVEKKASDLfitaGAPPS-------IKIDGKLTPLSQQPLtpEQVRELAYS--IMNeeQREEFERTkecnfai 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 253 -IPQDGRiklklsknkaidFRVNslptLFGEK----IVLR-----IldPSsamlgIDALGYEPEQKELFMEaldkPQGML 322
Cdd:COG5008 74 sLPGVGR------------FRVN----AFRQRgsvgMVLRrieteI--PT-----LDELGLPPVLKDLIME----KRGLV 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 323 LITGPTGSGKTVSLYTGLNILNREDTN-ISTAEDPVE--------InlegINQvnvnPKVGL---TFAAALKSFLRQDPD 390
Cdd:COG5008 127 LFVGATGSGKSTTLAAMIDHRNENSSGhILTIEDPIEfvhkhkksI----VTQ----REVGVdteSYEVALKNALRQAPD 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 391 IVMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMgVPSFNIAT-----SVNL--VIAQRLARRLCQKCK 463
Cdd:COG5008 199 VILIGEIRDRETMEHAIAFAETGHLCLATLHANNANQALDRIINF-FPEERRPQllmdlSLNLraIVSQRLVPTKDGGRV 277
|
....*
gi 1126529351 464 APVEI 468
Cdd:COG5008 278 AAVEV 282
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
311-456 |
4.85e-30 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 116.32 E-value: 4.85e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 311 FMEALDKPQGMLLITGPTGSGKTvslyTGLNILNRE-------DTNISTAEDPVEINLEGIN-------QVNVnPKVGLT 376
Cdd:cd19516 3 LVEALFPREGLVYVAGATGSGKS----TLLAAIYRYilendppDRKIITYEDPIEFVYDGIKskhsiivQSQI-PRHFKS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 377 FAAALKSFLRQDPDIVMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLV------I 450
Cdd:cd19516 78 FAKAVREALRRKPSLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLFPPEERDAAAYDLLstlrfiI 157
|
....*.
gi 1126529351 451 AQRLAR 456
Cdd:cd19516 158 VQRLVR 163
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
284-456 |
5.99e-23 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 100.65 E-value: 5.99e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 284 IVLRILdpSSAMLGIDALGYEPEqkeLFmEALDKPQGMLLITGPTGSGKTV---SLYTglNIL-NREDTNISTAEDPVEI 359
Cdd:TIGR02525 120 LTLRVI--PSDIPDLKQMGIEPD---LF-NSLLPAAGLGLICGETGSGKSTlaaSIYQ--HCGeTYPDRKIVTYEDPIEY 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 360 NLEGIN------QVNVNPKVGlTFAAALKSFLRQDPDIVMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLR 433
Cdd:TIGR02525 192 ILGSPDdllppaQSQIGRDVD-SFANGIRLALRRAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISRCL 270
|
170 180
....*....|....*....|....*....
gi 1126529351 434 NMGVP------SFNIATSVNLVIAQRLAR 456
Cdd:TIGR02525 271 QMYPPemreaaAFDLLSILQYIIVQRLLR 299
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
323-450 |
3.31e-19 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 85.28 E-value: 3.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 323 LITGPTGSGKTvslyTGLNILNRE---DTNISTAEDPVEINLEGINQV------NVNPKVGLTFAAALKSFLRQDPDIVM 393
Cdd:cd01130 16 LISGGTGSGKT----TLLNALLSFippDERIVTIEDTRELQLPHPNVVhlltrpGGGEKGEVTMADLLKAALRMRPDRII 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1126529351 394 VGEIRDLETAEiAIKAAQTGHM-VMSTLHTNSAPETLTRLRNMGVPSFN----------IATSVNLVI 450
Cdd:cd01130 92 VGEVRGGEAYD-MLQAMNTGHPgSITTIHANSAEDAIDRLATLVLEAGVnldeealrrlIASAIDVIV 158
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
320-457 |
1.14e-17 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 85.90 E-value: 1.14e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 320 GMLLITGPTGSGKTVSLYTGLNILNREDtNISTAEDPVEINL-------------EGINQVNVnpkvglTFAAALKSFLR 386
Cdd:COG0630 291 KSVLVAGGTASGKTTLLNALLSFIPPDA-KIVTIEDTRELNLphenwislvtresFGGEEGDV------TMFDLLKAALR 363
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1126529351 387 QDPDIVMVGEIRDLEtAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRN--MGVPSFNIaTSVNLVIAQRLARR 457
Cdd:COG0630 364 QRPDYIVVGEVRGEE-AYTLFQAMATGHGVLSTFHADSVESAINRLTSppINVPRTLL-QALDLVVFQKRVRV 434
|
|
| T2SSE_N |
pfam05157 |
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the ... |
46-147 |
3.84e-17 |
|
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the N-terminus of members of the Type II secretion system protein E. Proteins in this subfamily are typically involved in Type 4 pilus biogenesis, though some are involved in other processes; for instance aggregation in Myxococcus xanthus. The structure of this domain is now known.
Pssm-ID: 428339 [Multi-domain] Cd Length: 108 Bit Score: 76.99 E-value: 3.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 46 LIQQLQISPLTIAEKISYEFGEPIFDLAVYDSRLIVREGLDEKLFTKYRILPIFRRHNQLYIATSNPTNIEAIDAIRFNS 125
Cdd:pfam05157 1 LVELGLLSEEQLAQALAEQLGLPFVDLEALEIDPELLRLLPREFARRHRVLPLREDGGTLVVAVADPLDLALLDELRFLT 80
|
90 100
....*....|....*....|..
gi 1126529351 126 KLNIEVVIVEHDKLERLIEQNF 147
Cdd:pfam05157 81 GKRVEPVLATPSDIRRALERLY 102
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
322-456 |
1.30e-14 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 75.59 E-value: 1.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 322 LLITGPTGSGKTvslyTGLNILNRE---DTNISTAEDPVEINLEGINQV-------NVNPKVGLTFAAALKSFLRQDPDI 391
Cdd:COG4962 185 ILVSGGTGSGKT----TLLNALSGFippDERIVTIEDAAELQLQHPHVVrletrppNVEGAGEVTLRDLVRNALRMRPDR 260
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1126529351 392 VMVGEIRDletAEIA--IKAAQTGH-MVMSTLHTNSAPETLTRLRNMG------VPSFN----IATSVNLVIAQRLAR 456
Cdd:COG4962 261 IIVGEVRG---AEALdmLQAMNTGHdGSMSTLHANSARDALARLETLAlmagenLPREAvrrqIASAIDLVVHLERLR 335
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
305-435 |
3.02e-10 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 61.68 E-value: 3.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 305 PEQKELFMEALDKPQGMLLITGpTGSGKTVSLYTGLNILNREDTN--ISTAEDPVEINLEGINQVNVNPKVGLTFAAALK 382
Cdd:PRK13894 135 AAQREAIIAAVRAHRNILVIGG-TGSGKTTLVNAIINEMVIQDPTerVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLK 213
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1126529351 383 SFLRQDPDIVMVGEIRDLETAEIaIKAAQTGHM-VMSTLHTNSAPETLTRLRNM 435
Cdd:PRK13894 214 TTLRMRPDRILVGEVRGPEALDL-LMAWNTGHEgGAATLHANNAKAGLDRLKSL 266
|
|
| VirB11 |
TIGR02788 |
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ... |
322-435 |
1.40e-09 |
|
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Pssm-ID: 274301 Cd Length: 308 Bit Score: 59.67 E-value: 1.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 322 LLITGPTGSGKTvslyTGLNILNRE---DTNISTAEDPVEINLEGINQVN-VNPKVG-----LTFAAALKSFLRQDPDIV 392
Cdd:TIGR02788 147 IIISGGTGSGKT----TFLKSLVDEipkDERIITIEDTREIFLPHPNYVHlFYSKGGqglakVTPKDLLQSCLRMRPDRI 222
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1126529351 393 MVGEIRDLETAEIaIKAAQTGHM-VMSTLHTNSAPETLTRLRNM 435
Cdd:TIGR02788 223 ILGELRGDEAFDF-IRAVNTGHPgSITTLHAGSPEEAFEQLALM 265
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
322-432 |
4.98e-08 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 54.80 E-value: 4.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 322 LLITGPTGSGKTvslyTGLNILNRE------DTNISTAEDPVEINLEGINQVNVNPKVGLTFAAALKSFLRQDPDIVMVG 395
Cdd:PRK13833 147 IVISGGTGSGKT----TLANAVIAEivasapEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVG 222
|
90 100 110
....*....|....*....|....*....|....*...
gi 1126529351 396 EIRDlETAEIAIKAAQTGHM-VMSTLHTNSAPETLTRL 432
Cdd:PRK13833 223 EVRD-GAALTLLKAWNTGHPgGVTTIHSNTAMSALRRL 259
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
309-421 |
2.10e-05 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 46.81 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1126529351 309 ELFMEALDKPQGMLLITGPTGSGKTVSLYTGLNILNREDTNIsTAEDPVEINLEGINQVN-VNPKVGLTFAAA-----LK 382
Cdd:PRK13851 152 EAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLI-TIEDTLELVIPHENHVRlLYSKNGAGLGAVtaehlLQ 230
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1126529351 383 SFLRQDPDIVMVGEIRDlETAEIAIKAAQTGHM-VMSTLH 421
Cdd:PRK13851 231 ASLRMRPDRILLGEMRD-DAAWAYLSEVVSGHPgSISTIH 269
|
|
| |
