NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1125726925|ref|WP_075055225|]
View 

winged helix-turn-helix domain-containing protein [Nitrososphaera viennensis]

Protein Classification

COG3432 family protein( domain architecture ID 10007354)

COG3432 family protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG3432 COG3432
Predicted transcriptional regulator [Transcription];
3-91 2.88e-13

Predicted transcriptional regulator [Transcription];


:

Pssm-ID: 442658 [Multi-domain]  Cd Length: 83  Bit Score: 59.50  E-value: 2.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125726925  3 HEYRDRIYIRKDIILKLTEvGELNQTKLLSYCGLNIVKHKEILDDLEAKGFIEKFAEewgsKSVTKYRVTEKGRQFSKMi 82
Cdd:COG3432    1 MKRRSRLEIIADILEALKN-EGAKKTRIMYKANLSYDRLKKYLDLLEEKGLIEKEDD----GGRRIYRITEKGREFLEK- 74


                 ....*....
gi 1125726925 83 LEPYEEMFP 91
Cdd:COG3432   75 YEEIKELLE 83
 
Name Accession Description Interval E-value
COG3432 COG3432
Predicted transcriptional regulator [Transcription];
3-91 2.88e-13

Predicted transcriptional regulator [Transcription];


Pssm-ID: 442658 [Multi-domain]  Cd Length: 83  Bit Score: 59.50  E-value: 2.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125726925  3 HEYRDRIYIRKDIILKLTEvGELNQTKLLSYCGLNIVKHKEILDDLEAKGFIEKFAEewgsKSVTKYRVTEKGRQFSKMi 82
Cdd:COG3432    1 MKRRSRLEIIADILEALKN-EGAKKTRIMYKANLSYDRLKKYLDLLEEKGLIEKEDD----GGRRIYRITEKGREFLEK- 74


                 ....*....
gi 1125726925 83 LEPYEEMFP 91
Cdd:COG3432   75 YEEIKELLE 83
HTH_45 pfam14947
Winged helix-turn-helix; This winged helix-turn-helix domain contains an extended C-terminal ...
 5-90 1.29e-03

Winged helix-turn-helix; This winged helix-turn-helix domain contains an extended C-terminal alpha helix which is responsible for dimerization of this domain.


Pssm-ID: 405615 [Multi-domain]  Cd Length: 77  Bit Score: 34.50  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125726925  5 YRDRIYIRKDIiLKLTEVGELNQTKLLSYCGLNIVKHKEILDDLEAKGFIEkfaeewgsKSVTKYRVTEKGRQfskmILE 84
Cdd:pfam14947  1 RRSKLEIIADI-LEACSNGGAKKTKIMYNANLSYKLLNKYLDMLVDNGLIK--------NDGGKYVLTEKGLE----LLE 67


                 ....*.
gi 1125726925 85 PYEEMF 90
Cdd:pfam14947 68 KLREFR 73
 
Name Accession Description Interval E-value
COG3432 COG3432
Predicted transcriptional regulator [Transcription];
3-91 2.88e-13

Predicted transcriptional regulator [Transcription];


Pssm-ID: 442658 [Multi-domain]  Cd Length: 83  Bit Score: 59.50  E-value: 2.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125726925  3 HEYRDRIYIRKDIILKLTEvGELNQTKLLSYCGLNIVKHKEILDDLEAKGFIEKFAEewgsKSVTKYRVTEKGRQFSKMi 82
Cdd:COG3432    1 MKRRSRLEIIADILEALKN-EGAKKTRIMYKANLSYDRLKKYLDLLEEKGLIEKEDD----GGRRIYRITEKGREFLEK- 74


                 ....*....
gi 1125726925 83 LEPYEEMFP 91
Cdd:COG3432   75 YEEIKELLE 83
HTH_45 pfam14947
Winged helix-turn-helix; This winged helix-turn-helix domain contains an extended C-terminal ...
 5-90 1.29e-03

Winged helix-turn-helix; This winged helix-turn-helix domain contains an extended C-terminal alpha helix which is responsible for dimerization of this domain.


Pssm-ID: 405615 [Multi-domain]  Cd Length: 77  Bit Score: 34.50  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1125726925  5 YRDRIYIRKDIiLKLTEVGELNQTKLLSYCGLNIVKHKEILDDLEAKGFIEkfaeewgsKSVTKYRVTEKGRQfskmILE 84
Cdd:pfam14947  1 RRSKLEIIADI-LEACSNGGAKKTKIMYNANLSYKLLNKYLDMLVDNGLIK--------NDGGKYVLTEKGLE----LLE 67


                 ....*.
gi 1125726925 85 PYEEMF 90
Cdd:pfam14947 68 KLREFR 73
PadR pfam03551
Transcriptional regulator PadR-like family; Members of this family are transcriptional ...
 44-80 4.22e-03

Transcriptional regulator PadR-like family; Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.


Pssm-ID: 397561  Cd Length: 74  Bit Score: 32.99  E-value: 4.22e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 1125726925 44 ILDDLEAKGFIEKFAEEWGSKSVTK-YRVTEKGRQFSK 80
Cdd:pfam03551 37 ILKRLEKEGLVESEWVDSGGGPPRKyYRLTDAGRRELA 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH