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Conserved domains on  [gi|1120538799|ref|WP_073396980|]
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phage tail tape measure protein, partial [Staphylococcus aureus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YqbO COG5280
Phage-related minor tail protein [Mobilome: prophages, transposons];
129-756 2.42e-108

Phage-related minor tail protein [Mobilome: prophages, transposons];


:

Pssm-ID: 444091 [Multi-domain]  Cd Length: 962  Bit Score: 352.69  E-value: 2.42e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 129 KALNSAMGKLGNNFNNFGPKLQEIGNSMKNVGRNMTMYVTAPVVAGFAVAAKKGIEFDDSMRKVKATSGATGEEFEALKK 208
Cdd:COG5280    17 SGLTKEIKGFGKKFERAGEKMDRAGKKMKSIGAALTAGVTAALVAAGAAAVKAAADFEKAMSTVQAVTGATGEELEALEQ 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 209 KAREMGATTKFSASDSAEALNYMALAGWDSKQMMEGLSGVMDLAAASGEDLGAVSDIVTDGLTAFGLKAKDSGHFADVLA 288
Cdd:COG5280    97 LAKELGATTGESAAEVAEALGSVAQAGLSGDELIAVTEGALVLAAATGVDLNEAAEIVASAMNAFGLSADEASRVADLLA 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 289 QTSSKANTDVRGLGEAFKYVAPVAGALGYTIEDTSIAIGLMSNAGIKGEKAGTALRTMFTNLSSPTRAMGNEMERLGISI 368
Cdd:COG5280   177 AGAQAGNTTSDELADALKEYAPLAAALGFSLEETLAALALLANAGIKGSDAGTALKEFLIRLADPSKTAAEALEELGINV 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 369 TDSNGEMIPMRKLLDQLREKFKHLSKDQQASSAATIFGKEAMSGALAIINASDEDYQKLTRSIDSSTGASKRMADTMESG 448
Cdd:COG5280   257 FDASGKLKGLSEILGELAKKFAGLGEAARAAVLAAIFGDDAGRAAIALLLFGTDWYAKLTAALKNSAGAADEAAATMQDN 336

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 449 LGGKLRTLRSQLEELALTIYDRIEPALKIIVSAFSKVVTWVTKLPTSIQLAVVGFGLFAAVLGPLVFMFGLFISVMGNAM 528
Cdd:COG5280   337 LAGALESLKSALEGLAITIGETLLPALRDAVEALTGLADWFNELSPAVQELIIAIAGLVAALGPLLLILGALITGIGALA 416

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 529 TVLGPLLINVNKAGGifaflrtkiaslvklfpilgmsiSSLTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGV 608
Cdd:COG5280   417 GAFGILSTALAKAKG-----------------------ALLAGPIGIVIAAIAALAAALVLLYKNWDTIKEFLTGLWNSI 473

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 609 ANAFKAAKLALQGFFDLFKGDSKGAVtlekifppETVAGIQNVVNTIRTTFFKVVDEIVGFAKEIGAQLASFWKENGSEI 688
Cdd:COG5280   474 KEAIGGVWDGIKTSVEGLKGAAGAAL--------SAAAGKAIEALAGISVDALKQGVILSGTISMLWGAAGTEVSLKGGA 545

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1120538799 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGVIQGAINIILGIIK 756
Cdd:COG5280   546 AQDNVSDAASSAGDGALAIINSAEQAIIGLAAALKTASTSSALQASTKAAAATKAEKTILAIAMATVK 613
46 super family cl33686
endonuclease subunit; Provisional
 49-166 5.20e-05

endonuclease subunit; Provisional


The actual alignment was detected with superfamily member PHA02562:

Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 46.55  E-value: 5.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799  49 NSLEKSKIKV-----EGLS-KKQKVQAQItKELKDSYDKLSKETGENSAKTQAaaaKYNEAYAKLNQYERELNQATQELK 122
Cdd:PHA02562  169 DKLNKDKIRElnqqiQTLDmKIDHIQQQI-KTYNKNIEEQRKKNGENIARKQN---KYDELVEEAKTIKAEIEELTDELL 244

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1120538799 123 DMQREQKALNSAMGKLGNnfnnfgpKLQEIGNSMKNVGRNMTMY 166
Cdd:PHA02562  245 NLVMDIEDPSAALNKLNT-------AAAKIKSKIEQFQKVIKMY 281
 
Name Accession Description Interval E-value
YqbO COG5280
Phage-related minor tail protein [Mobilome: prophages, transposons];
129-756 2.42e-108

Phage-related minor tail protein [Mobilome: prophages, transposons];


Pssm-ID: 444091 [Multi-domain]  Cd Length: 962  Bit Score: 352.69  E-value: 2.42e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 129 KALNSAMGKLGNNFNNFGPKLQEIGNSMKNVGRNMTMYVTAPVVAGFAVAAKKGIEFDDSMRKVKATSGATGEEFEALKK 208
Cdd:COG5280    17 SGLTKEIKGFGKKFERAGEKMDRAGKKMKSIGAALTAGVTAALVAAGAAAVKAAADFEKAMSTVQAVTGATGEELEALEQ 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 209 KAREMGATTKFSASDSAEALNYMALAGWDSKQMMEGLSGVMDLAAASGEDLGAVSDIVTDGLTAFGLKAKDSGHFADVLA 288
Cdd:COG5280    97 LAKELGATTGESAAEVAEALGSVAQAGLSGDELIAVTEGALVLAAATGVDLNEAAEIVASAMNAFGLSADEASRVADLLA 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 289 QTSSKANTDVRGLGEAFKYVAPVAGALGYTIEDTSIAIGLMSNAGIKGEKAGTALRTMFTNLSSPTRAMGNEMERLGISI 368
Cdd:COG5280   177 AGAQAGNTTSDELADALKEYAPLAAALGFSLEETLAALALLANAGIKGSDAGTALKEFLIRLADPSKTAAEALEELGINV 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 369 TDSNGEMIPMRKLLDQLREKFKHLSKDQQASSAATIFGKEAMSGALAIINASDEDYQKLTRSIDSSTGASKRMADTMESG 448
Cdd:COG5280   257 FDASGKLKGLSEILGELAKKFAGLGEAARAAVLAAIFGDDAGRAAIALLLFGTDWYAKLTAALKNSAGAADEAAATMQDN 336

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 449 LGGKLRTLRSQLEELALTIYDRIEPALKIIVSAFSKVVTWVTKLPTSIQLAVVGFGLFAAVLGPLVFMFGLFISVMGNAM 528
Cdd:COG5280   337 LAGALESLKSALEGLAITIGETLLPALRDAVEALTGLADWFNELSPAVQELIIAIAGLVAALGPLLLILGALITGIGALA 416

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 529 TVLGPLLINVNKAGGifaflrtkiaslvklfpilgmsiSSLTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGV 608
Cdd:COG5280   417 GAFGILSTALAKAKG-----------------------ALLAGPIGIVIAAIAALAAALVLLYKNWDTIKEFLTGLWNSI 473

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 609 ANAFKAAKLALQGFFDLFKGDSKGAVtlekifppETVAGIQNVVNTIRTTFFKVVDEIVGFAKEIGAQLASFWKENGSEI 688
Cdd:COG5280   474 KEAIGGVWDGIKTSVEGLKGAAGAAL--------SAAAGKAIEALAGISVDALKQGVILSGTISMLWGAAGTEVSLKGGA 545

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1120538799 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGVIQGAINIILGIIK 756
Cdd:COG5280   546 AQDNVSDAASSAGDGALAIINSAEQAIIGLAAALKTASTSSALQASTKAAAATKAEKTILAIAMATVK 613
tape_meas_TP901 TIGR01760
phage tail tape measure protein, TP901 family, core region; This model represents a reasonably ...
 168-515 2.87e-76

phage tail tape measure protein, TP901 family, core region; This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273790 [Multi-domain]  Cd Length: 350  Bit Score: 249.97  E-value: 2.87e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 168 TAPVVAGFAVAAKKGIEFDDSMRKVKATSGATG-EEFEALKKKAREMGATTKFSASDSAEALNYMALAGWDSKQMMEGLS 246
Cdd:TIGR01760   1 SAALGGGLVAAVKAAIEFEDAMSGVRAVVDGSRtKEFEDLSNQARDLGDETPFSAAQIAGAMTALARAGISAKDLLGATP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 247 GVMDLAAASGEDLGAVSDIVTDGLTAFGLKAKDSGHFADVLAQTSSKANTDVRGLGEAFKYVAPVAGALGYTIEDTSIAI 326
Cdd:TIGR01760  81 TALKLAAASDLTAEEAASILAKIMNAFGLTAKDSEKVADVLNYTANNSAATTRDMGDALQYAGPVAKSLGVSLEETAAAT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 327 GLMSNAGIKGEKAGTALRTMFTNLSSPTRAMGNEMERLGISITDSNGEMIPMRKLLDQLREKFKHLSKDQQASSAATIFG 406
Cdd:TIGR01760 161 AALASAGIEGEIAGTALKAMLSRLAAPTGKAAKALKKLGIQTRDAKGNMKGLLDVLKELQKLTKGMGTEQQAAKLKTIFG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 407 KEAMSGALAIINASDED-YQKLTRSIDSSTGASKRMADTMESGLGGKLRTLRSQLEELALTIYDRIEPALKIIVSAFSKV 485
Cdd:TIGR01760 241 VEASSALATLLTAGSKLsLAKNAKSLANSNGSAKKEADKMLDTLKGQLKLLQNAVENAFIELGEALLPALRELAQALTKL 320

                         330       340       350
                  ....*....|....*....|....*....|
gi 1120538799 486 VTWVTKLPTSIQLAVVGFGLFAAVLGPLVF 515
Cdd:TIGR01760 321 INAINGLAKGNPQLAVTLAAVAAAILALTA 350
PhageMin_Tail pfam10145
Phage-related minor tail protein; Members of this family are found in putative phage tail tape ...
 208-406 2.84e-57

Phage-related minor tail protein; Members of this family are found in putative phage tail tape measure proteins.


Pssm-ID: 462962 [Multi-domain]  Cd Length: 201  Bit Score: 193.67  E-value: 2.84e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 208 KKAREMGATTKFSASDSAEALNYMALAGWDSKQMMEGLSGVMDLAAASG-EDLGAVSDIVTDGLTAFGLKAKDSGHFADV 286
Cdd:pfam10145   2 DAALELGETTGFSATDAAEAMAALASAGLSAEELLSATEGALKLAVAGGaTDAAEAAEALAAAMNAFGLSADDAEEAADV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 287 LAQTSSKANTDVRGLGEAFKYVAPVAGALGYTIEDTSIAIGLMSNAGIKGEKAGTALRTMFTNLSSPTRAMGNEMERLGI 366
Cdd:pfam10145  82 LAAAANNGATEVGDLADALKEVGPVAKAAGLSGEETAAALALLAAAGISGSEAGTALKNFLTRLAAPTKEAAKALKKLGI 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1120538799 367 SITDSNGEMIPMRKLLDQLREKFKHLSKDQQASSAATIFG 406
Cdd:pfam10145 162 SAKDANGKMKSLSEILEELAQALKGLTDAQRAAALSALFG 201
46 PHA02562
endonuclease subunit; Provisional
 49-166 5.20e-05

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 46.55  E-value: 5.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799  49 NSLEKSKIKV-----EGLS-KKQKVQAQItKELKDSYDKLSKETGENSAKTQAaaaKYNEAYAKLNQYERELNQATQELK 122
Cdd:PHA02562  169 DKLNKDKIRElnqqiQTLDmKIDHIQQQI-KTYNKNIEEQRKKNGENIARKQN---KYDELVEEAKTIKAEIEELTDELL 244

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1120538799 123 DMQREQKALNSAMGKLGNnfnnfgpKLQEIGNSMKNVGRNMTMY 166
Cdd:PHA02562  245 NLVMDIEDPSAALNKLNT-------AAAKIKSKIEQFQKVIKMY 281
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
33-138 1.73e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 41.43  E-value: 1.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799  33 VSRELSANLSQFSRYDNSLEKSKIKVEGLSK-KQKVQAQITKElKDSYDKLSKETGENSAKTQAAAAKYNEAYAKLNQYE 111
Cdd:COG4372    29 LSEQLRKALFELDKLQEELEQLREELEQAREeLEQLEEELEQA-RSELEQLEEELEELNEQLQAAQAELAQAQEELESLQ 107

                          90       100
                  ....*....|....*....|....*..
gi 1120538799 112 RELNQATQELKDMQREQKALNSAMGKL 138
Cdd:COG4372   108 EEAEELQEELEELQKERQDLEQQRKQL 134
 
Name Accession Description Interval E-value
YqbO COG5280
Phage-related minor tail protein [Mobilome: prophages, transposons];
129-756 2.42e-108

Phage-related minor tail protein [Mobilome: prophages, transposons];


Pssm-ID: 444091 [Multi-domain]  Cd Length: 962  Bit Score: 352.69  E-value: 2.42e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 129 KALNSAMGKLGNNFNNFGPKLQEIGNSMKNVGRNMTMYVTAPVVAGFAVAAKKGIEFDDSMRKVKATSGATGEEFEALKK 208
Cdd:COG5280    17 SGLTKEIKGFGKKFERAGEKMDRAGKKMKSIGAALTAGVTAALVAAGAAAVKAAADFEKAMSTVQAVTGATGEELEALEQ 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 209 KAREMGATTKFSASDSAEALNYMALAGWDSKQMMEGLSGVMDLAAASGEDLGAVSDIVTDGLTAFGLKAKDSGHFADVLA 288
Cdd:COG5280    97 LAKELGATTGESAAEVAEALGSVAQAGLSGDELIAVTEGALVLAAATGVDLNEAAEIVASAMNAFGLSADEASRVADLLA 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 289 QTSSKANTDVRGLGEAFKYVAPVAGALGYTIEDTSIAIGLMSNAGIKGEKAGTALRTMFTNLSSPTRAMGNEMERLGISI 368
Cdd:COG5280   177 AGAQAGNTTSDELADALKEYAPLAAALGFSLEETLAALALLANAGIKGSDAGTALKEFLIRLADPSKTAAEALEELGINV 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 369 TDSNGEMIPMRKLLDQLREKFKHLSKDQQASSAATIFGKEAMSGALAIINASDEDYQKLTRSIDSSTGASKRMADTMESG 448
Cdd:COG5280   257 FDASGKLKGLSEILGELAKKFAGLGEAARAAVLAAIFGDDAGRAAIALLLFGTDWYAKLTAALKNSAGAADEAAATMQDN 336

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 449 LGGKLRTLRSQLEELALTIYDRIEPALKIIVSAFSKVVTWVTKLPTSIQLAVVGFGLFAAVLGPLVFMFGLFISVMGNAM 528
Cdd:COG5280   337 LAGALESLKSALEGLAITIGETLLPALRDAVEALTGLADWFNELSPAVQELIIAIAGLVAALGPLLLILGALITGIGALA 416

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 529 TVLGPLLINVNKAGGifaflrtkiaslvklfpilgmsiSSLTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGV 608
Cdd:COG5280   417 GAFGILSTALAKAKG-----------------------ALLAGPIGIVIAAIAALAAALVLLYKNWDTIKEFLTGLWNSI 473

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 609 ANAFKAAKLALQGFFDLFKGDSKGAVtlekifppETVAGIQNVVNTIRTTFFKVVDEIVGFAKEIGAQLASFWKENGSEI 688
Cdd:COG5280   474 KEAIGGVWDGIKTSVEGLKGAAGAAL--------SAAAGKAIEALAGISVDALKQGVILSGTISMLWGAAGTEVSLKGGA 545

                         570       580       590       600       610       620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1120538799 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGVIQGAINIILGIIK 756
Cdd:COG5280   546 AQDNVSDAASSAGDGALAIINSAEQAIIGLAAALKTASTSSALQASTKAAAATKAEKTILAIAMATVK 613
COG5283 COG5283
Phage-related tail protein [Mobilome: prophages, transposons];
42-726 5.77e-80

Phage-related tail protein [Mobilome: prophages, transposons];


Pssm-ID: 444094 [Multi-domain]  Cd Length: 747  Bit Score: 271.34  E-value: 5.77e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799  42 SQFSRYDNSLEKSKIKVEGLSKKQKVQA-------QITKELKDSYDKLSKETGENSAKTQAAAAKYNEAYAKLNQYEREL 114
Cdd:COG5283    14 SALESAKQRVAALAQALKALEAPTRALAralerakQAAARLQTKYNKLRQSLQRLRQALDQAGIDTRQLSAAQRRLRSSL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 115 NQATQELKDMQREQKALNSAMGKLgnnfNNFGPKLQEIGnsmknvgrnMTMYVTAPVVAGFAVAAKKGIEFDDSMRKVKA 194
Cdd:COG5283    94 EQTNRQLERQQQRLARLGARQDRL----KAARARLQRLA---------GAGAAAAAIGAALAASVKPAIDFEDAMADVAA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 195 T--SGATGEEFEALKKKAREMGATTKFSASDSAEALNYMALAGWDSKQMMEGLSGVMDLAAASGEDLGAVSDIVTDGLTA 272
Cdd:COG5283   161 TvdLDKSSEQFKALGKQARELSAQTPQSADDIAAGQAALAQAGVSAEDILAFTPTAAKLATAFDTDAEEAAEIAAKILNA 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 273 FGLKAKDSGHFADVLAQTSSKANTDVRGLGEAFKYVAPVAGALGYTIEDTSIAIGLMSNAGIKGEKAGTALRTMFTNLSS 352
Cdd:COG5283   241 FKLPADDVERLGDALNYAGNNGATSLADLADALPYVGPVAKALGVSGKEAAALGAALADAGIEGEEAGTALRNMLTRLTS 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 353 PTRAMGNEMERLGISITDSNGEMIPM------------RKLLDQLREKFKHLSKDQQASSAATIFGKEAMSGALAIINAS 420
Cdd:COG5283   321 PTKAAAKALKKLGIDTQDSKGNLRGLakilakqmqkdaQGALAELLKALKKLDAAKRAAALKQLFGEEAVSALAPLLQNG 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 421 DE-DYQKLTRSIDSSTGASKRMADTMESGLGGKLRTLRSQLEELALTIYDRIEPALKIIVSAFSKVVTWVTK-------L 492
Cdd:COG5283   401 DElRKQLAVAEAAAAQGSMDKEAAKRTDTLAGQLKLLKNALENLGISIGEALLPALRELAQALTPVVGKLADwakanpgL 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 493 PTSIQLAVVGFGLFAAVLGPLVFMFGLFIS----VMGNAMTVLGPLLINVNKAGGIFAFLRTKIASLVKLFPILGMSISS 568
Cdd:COG5283   481 IKTIVKVAAALAGLKAALGALRLALALLLSplaaLKAAAALLGGGGLGGAGRGAGALAALGGAKGLKLAGGAVLWLGRAL 560

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 569 LTLPITLIVGALVGIGIAfyqAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKGDS-KGAVTLEKIFPPETVAG 647
Cdd:COG5283   561 LANPIGLVIAAIAAAAYL---IYKYWEPIKAFFKGVWEGIKAAFSPAWEAIKALISNWLGPVwDGLAIAGAGAGEAAAAA 637

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 648 IQNVVNTIRTTFFKVVDEIVGFAKEIGAQLASF--WKENGSEITQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFI 725
Cdd:COG5283   638 AVAGAQAAAGGAVTAAQLGAGAKNGAGATGGGGalLGLAGTGRALFAAGGGAAAVGGDGGGAIAGSALSRSAGIAAFGAQ 717


                  .
gi 1120538799 726 W 726
Cdd:COG5283   718 A 718
tape_meas_TP901 TIGR01760
phage tail tape measure protein, TP901 family, core region; This model represents a reasonably ...
 168-515 2.87e-76

phage tail tape measure protein, TP901 family, core region; This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273790 [Multi-domain]  Cd Length: 350  Bit Score: 249.97  E-value: 2.87e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 168 TAPVVAGFAVAAKKGIEFDDSMRKVKATSGATG-EEFEALKKKAREMGATTKFSASDSAEALNYMALAGWDSKQMMEGLS 246
Cdd:TIGR01760   1 SAALGGGLVAAVKAAIEFEDAMSGVRAVVDGSRtKEFEDLSNQARDLGDETPFSAAQIAGAMTALARAGISAKDLLGATP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 247 GVMDLAAASGEDLGAVSDIVTDGLTAFGLKAKDSGHFADVLAQTSSKANTDVRGLGEAFKYVAPVAGALGYTIEDTSIAI 326
Cdd:TIGR01760  81 TALKLAAASDLTAEEAASILAKIMNAFGLTAKDSEKVADVLNYTANNSAATTRDMGDALQYAGPVAKSLGVSLEETAAAT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 327 GLMSNAGIKGEKAGTALRTMFTNLSSPTRAMGNEMERLGISITDSNGEMIPMRKLLDQLREKFKHLSKDQQASSAATIFG 406
Cdd:TIGR01760 161 AALASAGIEGEIAGTALKAMLSRLAAPTGKAAKALKKLGIQTRDAKGNMKGLLDVLKELQKLTKGMGTEQQAAKLKTIFG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 407 KEAMSGALAIINASDED-YQKLTRSIDSSTGASKRMADTMESGLGGKLRTLRSQLEELALTIYDRIEPALKIIVSAFSKV 485
Cdd:TIGR01760 241 VEASSALATLLTAGSKLsLAKNAKSLANSNGSAKKEADKMLDTLKGQLKLLQNAVENAFIELGEALLPALRELAQALTKL 320

                         330       340       350
                  ....*....|....*....|....*....|
gi 1120538799 486 VTWVTKLPTSIQLAVVGFGLFAAVLGPLVF 515
Cdd:TIGR01760 321 INAINGLAKGNPQLAVTLAAVAAAILALTA 350
PhageMin_Tail pfam10145
Phage-related minor tail protein; Members of this family are found in putative phage tail tape ...
 208-406 2.84e-57

Phage-related minor tail protein; Members of this family are found in putative phage tail tape measure proteins.


Pssm-ID: 462962 [Multi-domain]  Cd Length: 201  Bit Score: 193.67  E-value: 2.84e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 208 KKAREMGATTKFSASDSAEALNYMALAGWDSKQMMEGLSGVMDLAAASG-EDLGAVSDIVTDGLTAFGLKAKDSGHFADV 286
Cdd:pfam10145   2 DAALELGETTGFSATDAAEAMAALASAGLSAEELLSATEGALKLAVAGGaTDAAEAAEALAAAMNAFGLSADDAEEAADV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 287 LAQTSSKANTDVRGLGEAFKYVAPVAGALGYTIEDTSIAIGLMSNAGIKGEKAGTALRTMFTNLSSPTRAMGNEMERLGI 366
Cdd:pfam10145  82 LAAAANNGATEVGDLADALKEVGPVAKAAGLSGEETAAALALLAAAGISGSEAGTALKNFLTRLAAPTKEAAKALKKLGI 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1120538799 367 SITDSNGEMIPMRKLLDQLREKFKHLSKDQQASSAATIFG 406
Cdd:pfam10145 162 SAKDANGKMKSLSEILEELAQALKGLTDAQRAAALSALFG 201
COG5412 COG5412
Phage-related protein [Mobilome: prophages, transposons];
198-757 2.22e-16

Phage-related protein [Mobilome: prophages, transposons];


Pssm-ID: 444167 [Multi-domain]  Cd Length: 704  Bit Score: 83.59  E-value: 2.22e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 198 ATGEEFEALKKKAREMGATTKFSASDSAEALNYMALAGWDSKQMMEGLSGVMDLAAASGEDLGAVSDIVTDGLTAFGLKA 277
Cdd:COG5412     4 ADASAKEAASAALLLAQAKAADSELTAASGGVVSAAAKAQGSIAQLGKIGAAAGAEAALADSSLAFATLAAALGATVAGA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 278 KDSGHFADVLAQTSSKANTDVRGLGEAFKYVAPVAGALGYTIEDTSIAIGLMSNAGIKGEKAGTALRTMFTNLSSP---T 354
Cdd:COG5412    84 SLLLAAGGARAKGSAAAAAALGAVAAAAKVLNGALAAAGAALAATQALAAAATGAKGEANAAAKAGGAAALASAGLaaaG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 355 RAMGNEMERLGISITDSNGEMipMRKLLDQLREKFKHLSKDQQASSAATIFGKEAMSGALAIINASDEDYQKLT--RSID 432
Cdd:COG5412   164 AAAAASALAAAGAIAKAILSA--SKLSGQALAGQSAAAGGALEAAAAAAAGAAAAGAAAAAATAASALLALAALqgLAAG 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 433 SSTGASKRMADTMESGLGGKLRTLRSQLEELALTIYDRIEPALKIIVSAFSKVVTWVTKLPTSIQLAVVGFGLFAAVLGP 512
Cdd:COG5412   242 AATGAAAGAAGAAGLGAAGAGAGQAAALLGLVAGAEASGGTAGGAVAGLAAGLAAAAGASANLGAAAAASFGASLAASAG 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 513 LVFMF----GLFISVMGNAMTVLGPLLINVNKAGGIFAFLRTKIASLvKLFPILGMSISSLTLPITLIVGALVGIGIAFY 588
Cdd:COG5412   322 VDTAAaalaAAEAIADGSLVAGLGSAGTVLSTLSGAVGGLEGAIGQL-GAAGGLGSALGGLTGPIGIVIAAIAALIAAFV 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 589 QAYKRSETFRNIVNQAISGvanafkaaklalqgffdlfkgdskgavtlekifppetvagiqnvvNTIRTTFFKVVDEIVG 668
Cdd:COG5412   401 ALWKNSETFRNLVQGVWEL---------------------------------------------NAIKTAIEGVVSAIVT 435

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 669 FAKEIGAQLASFWKENGSEITQALQNIAGFIKATFEFIFNFIikpimfaiWQVMQFIWPAVKALIVSTWENIKGVIQGAI 748
Cdd:COG5412   436 FISALWEAIKALLTAIGGALPQLIAAVWNGIVQFISAIITNL--------PLILQAALQLIKALIKGLWTAIKGVIQGAI 507


                  ....*....
gi 1120538799 749 NIILGIIKV 757
Cdd:COG5412   508 EIITGIIQF 516
46 PHA02562
endonuclease subunit; Provisional
 49-166 5.20e-05

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 46.55  E-value: 5.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799  49 NSLEKSKIKV-----EGLS-KKQKVQAQItKELKDSYDKLSKETGENSAKTQAaaaKYNEAYAKLNQYERELNQATQELK 122
Cdd:PHA02562  169 DKLNKDKIRElnqqiQTLDmKIDHIQQQI-KTYNKNIEEQRKKNGENIARKQN---KYDELVEEAKTIKAEIEELTDELL 244

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1120538799 123 DMQREQKALNSAMGKLGNnfnnfgpKLQEIGNSMKNVGRNMTMY 166
Cdd:PHA02562  245 NLVMDIEDPSAALNKLNT-------AAAKIKSKIEQFQKVIKMY 281
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
33-138 1.73e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 41.43  E-value: 1.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799  33 VSRELSANLSQFSRYDNSLEKSKIKVEGLSK-KQKVQAQITKElKDSYDKLSKETGENSAKTQAAAAKYNEAYAKLNQYE 111
Cdd:COG4372    29 LSEQLRKALFELDKLQEELEQLREELEQAREeLEQLEEELEQA-RSELEQLEEELEELNEQLQAAQAELAQAQEELESLQ 107

                          90       100
                  ....*....|....*....|....*..
gi 1120538799 112 RELNQATQELKDMQREQKALNSAMGKL 138
Cdd:COG4372   108 EEAEELQEELEELQKERQDLEQQRKQL 134
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 62-154 2.44e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.90  E-value: 2.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799  62 SKKQKVQAQItKELKDSYDKLSKETGENSAKTQAAAAKYNEAYAKLNQYERELNQATQELKDMQREQKALNSAMGKLGNN 141
Cdd:COG4942    27 AELEQLQQEI-AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105

                          90
                  ....*....|...
gi 1120538799 142 FNNFGPKLQEIGN 154
Cdd:COG4942   106 LAELLRALYRLGR 118
TMP_2 pfam06791
Prophage tail length tape measure protein; This family represents a conserved region located ...
 136-259 2.70e-03

Prophage tail length tape measure protein; This family represents a conserved region located towards the N-terminal end of prophage tail length tape measure protein (TMP). TMP is important for assembly of phage tails and involved in tail length determination. Mutated forms TMP cause tail fibres to be shortened.


Pssm-ID: 429120  Cd Length: 205  Bit Score: 40.01  E-value: 2.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799 136 GKLGNNFNNFGPKLQEIGNSMKNVGRNMTMYVTAPVVAGFAVAAKKG----IEFDDSMRKVKATSGATGEEFEALKKKAR 211
Cdd:pfam06791  44 GQIKDMFGGIGPALKALGGYVLGLINPLTLAAAAAAVGALALAYYKGaeeaDAFNKALILTGNAAGTTASQLAAMAEAIA 123

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1120538799 212 EMGATTkfsaSDSAEALNYMALAGWDSKQMMEGLSGV-MDLAAASGEDL 259
Cdd:pfam06791 124 AAGGTQ----GAAAEALAALASTGKIGGEQLEGVIRAaARMEKATGQSV 168
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
29-158 4.24e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 40.27  E-value: 4.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799  29 QMKMVSRELSANLSQFSRYDNSLEKSKIKvegLSKKQKVQAQITKELKDSYDKLSketgENSAKTQAAAAKYNEAYAKLN 108
Cdd:COG4372    39 ELDKLQEELEQLREELEQAREELEQLEEE---LEQARSELEQLEEELEELNEQLQ----AAQAELAQAQEELESLQEEAE 111

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1120538799 109 QYERELNQATQELKDMQREQKALNSAMGKLGNNFNNFGPKLQEIGNSMKN 158
Cdd:COG4372   112 ELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLES 161
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 77-165 7.96e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 39.43  E-value: 7.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1120538799  77 DSYDKLSKETGENSAKTQAAAAKYNEAYAKLNQYERELNQATQELKDMQREQKALNSAMGKLGNNFNNFGPKLQEIGNSM 156
Cdd:COG3883    16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL 95


                  ....*....
gi 1120538799 157 KNVGRNMTM 165
Cdd:COG3883    96 YRSGGSVSY 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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