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Conserved domains on  [gi|1117971842|ref|WP_072165042|]
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MULTISPECIES: colicin release lysis protein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Lysis_col super family cl03573
Lysis protein; These small bacterial proteins are required for colicin release and partial ...
 2-40 7.18e-09

Lysis protein; These small bacterial proteins are required for colicin release and partial cell lysis. This family contains lysis proteins for several different forms of colicin. Swiss:Q02112 has been included in this family, the similarity is not highly significant, however it is also a short protein, that is involved in secretion of other proteins (Bateman A pers. obs.). This family includes a signal peptide motif and a lipid attachment site.


The actual alignment was detected with superfamily member pfam02402:

Pssm-ID: 367072  Cd Length: 49  Bit Score: 45.10  E-value: 7.18e-09
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1117971842  2 ILVLAVLCLTACQANYVRDVQGGTIAPSSSSKLIGVAVQ 40
Cdd:pfam02402 11 AIIFGGFLLAACQANNIRDTGGGSVAPSSSSELTGIAMG 49
 
Name Accession Description Interval E-value
Lysis_col pfam02402
Lysis protein; These small bacterial proteins are required for colicin release and partial ...
 2-40 7.18e-09

Lysis protein; These small bacterial proteins are required for colicin release and partial cell lysis. This family contains lysis proteins for several different forms of colicin. Swiss:Q02112 has been included in this family, the similarity is not highly significant, however it is also a short protein, that is involved in secretion of other proteins (Bateman A pers. obs.). This family includes a signal peptide motif and a lipid attachment site.


Pssm-ID: 367072  Cd Length: 49  Bit Score: 45.10  E-value: 7.18e-09
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1117971842  2 ILVLAVLCLTACQANYVRDVQGGTIAPSSSSKLIGVAVQ 40
Cdd:pfam02402 11 AIIFGGFLLAACQANNIRDTGGGSVAPSSSSELTGIAMG 49
 
Name Accession Description Interval E-value
Lysis_col pfam02402
Lysis protein; These small bacterial proteins are required for colicin release and partial ...
 2-40 7.18e-09

Lysis protein; These small bacterial proteins are required for colicin release and partial cell lysis. This family contains lysis proteins for several different forms of colicin. Swiss:Q02112 has been included in this family, the similarity is not highly significant, however it is also a short protein, that is involved in secretion of other proteins (Bateman A pers. obs.). This family includes a signal peptide motif and a lipid attachment site.


Pssm-ID: 367072  Cd Length: 49  Bit Score: 45.10  E-value: 7.18e-09
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1117971842  2 ILVLAVLCLTACQANYVRDVQGGTIAPSSSSKLIGVAVQ 40
Cdd:pfam02402 11 AIIFGGFLLAACQANNIRDTGGGSVAPSSSSELTGIAMG 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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