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Conserved domains on  [gi|1104815437|ref|WP_071785632|]
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MULTISPECIES: DUF3696 domain-containing protein [Klebsiella]

Protein Classification

AAA family ATPase( domain architecture ID 19843168)

AAA family ATPase containing an AAA (ATPases Associated with various cellular Activities) domain, may function as an ATP-dependent endonuclease or the ATPase component of an ABC-type transporter

CATH:  3.40.50.300
Gene Ontology:  GO:0005524|GO:0016887
PubMed:  15037234|18208389|17897320|18466635|16072036|11916378|15037233
SCOP:  2000039

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
COG4938 COG4938
Predicted ATPase [General function prediction only];
376-623 8.32e-46

Predicted ATPase [General function prediction only];


:

Pssm-ID: 443965 [Multi-domain]  Cd Length: 277  Bit Score: 163.60  E-value: 8.32e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 376 GIKYLGPLRNAPGPFYDTNQYDDESVGLRGEFTAALLYKKKNMmisynfpilfnkeqnIKFEERRDTLYDACISWLSYLG 455
Cdd:COG4938    47 NFIYLPAERSGPARLYPSLVRELSDLGSRGEYTADFLAELENL---------------EILDDKSKELLEQVEEWLEKIF 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 456 vLTEIEVgDRGELGYNLQVKNVNDKKLQGLSHVGVGVSQVLPIIVMML-LSEKNDILILEQPELHLHPKSQSRLCDLIIA 534
Cdd:COG4938   112 -PGKVEV-DASSDLVRLVFRPSGNGKRIPLSNVGSGVSELLPILLALLsAAKPGSLLIIEEPEAHLHPKAQSALAELLAE 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 535 CSTTERQCIIETHSEYIINRLRLRIAQSPDsnLINSNF-LYFVNKAQNFSFFEKVDINRFGAIPNWPEGFFDQTDKEIEK 613
Cdd:COG4938   190 LANSGVQVIIETHSDYILNGLRNLIKEGKL--LDPDDVaVYFFERDGGGSELRRIEIDENGIISDWPDGFFDEVSEDLAE 267

                         250
                  ....*....|
gi 1104815437 614 ILIAASNKSK 623
Cdd:COG4938   268 LFEALLEKED 277
COG4637 super family cl34796
Predicted ATPase [General function prediction only];
1-102 3.32e-07

Predicted ATPase [General function prediction only];


The actual alignment was detected with superfamily member COG4637:

Pssm-ID: 443675 [Multi-domain]  Cd Length: 371  Bit Score: 53.01  E-value: 3.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437   1 MINNISIHNFKSLNTSDpIEMGSCLFLCGPNSSGKSSFIQAILMIAQTFSRNYKDGrVVLNGGfiklgvFENILSYS--T 78
Cdd:COG4637     1 MITRIRIKNFKSLRDLE-LPLGPLTVLIGANGSGKSNLLDALRFLSDAARGGLQDA-LARRGG------LEELLWRGprT 72

                          90       100
                  ....*....|....*....|....
gi 1104815437  79 DSNEILISFELFPENEFLKKYGIQ 102
Cdd:COG4637    73 ITEPIRLELEFAEEDERDLRYELE 96
AAA_21 super family cl37854
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ...
 29-264 4.99e-05

AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.


The actual alignment was detected with superfamily member pfam13304:

Pssm-ID: 433102 [Multi-domain]  Cd Length: 303  Bit Score: 45.84  E-value: 4.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437  29 GPNSSGKSSFIQAILMIAQTFsrNYKDGRVVLNGGFIKLGVFENILSYSTDSNEILISFELFPENEFLKKYGIQKIY--L 106
Cdd:pfam13304   6 GPNGSGKSNLLEALRFLADFD--ALVIGLTDERSRNGGIGGIPSLLNGIDPKEPIEFEISEFLEDGVRYRYGLDLERedV 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 107 EFSFGAIDSDVDKRQYNPELNRVKVIAFSNNGGlanLNHKLSFEVEKSSLIRLDLYGED-IADLEKVYPGYVFTGVSKFD 185
Cdd:pfam13304  84 EEKLSSKPTLLEKRLLLREDSEEREPKFPPEAE---ELRLGLDVEERIELSLSELSDLIsGLLLLSIISPLSFLLLLDEG 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1104815437 186 GFIPTKIQLNYQVSKKISQDLIPLMinEEKFLFKKNIFKDVEKKELSNIFIPEVFAIRIVELISDKLNNLKRELNIPSE 264
Cdd:pfam13304 161 LLLEDWAVLDLAADLALFPDLKELL--QRLVRGLKLADLNLSDLGEGIEKSLLVDDRLRERGLILLENGGGGELPAFEL 237
 
Name Accession Description Interval E-value
COG4938 COG4938
Predicted ATPase [General function prediction only];
376-623 8.32e-46

Predicted ATPase [General function prediction only];


Pssm-ID: 443965 [Multi-domain]  Cd Length: 277  Bit Score: 163.60  E-value: 8.32e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 376 GIKYLGPLRNAPGPFYDTNQYDDESVGLRGEFTAALLYKKKNMmisynfpilfnkeqnIKFEERRDTLYDACISWLSYLG 455
Cdd:COG4938    47 NFIYLPAERSGPARLYPSLVRELSDLGSRGEYTADFLAELENL---------------EILDDKSKELLEQVEEWLEKIF 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 456 vLTEIEVgDRGELGYNLQVKNVNDKKLQGLSHVGVGVSQVLPIIVMML-LSEKNDILILEQPELHLHPKSQSRLCDLIIA 534
Cdd:COG4938   112 -PGKVEV-DASSDLVRLVFRPSGNGKRIPLSNVGSGVSELLPILLALLsAAKPGSLLIIEEPEAHLHPKAQSALAELLAE 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 535 CSTTERQCIIETHSEYIINRLRLRIAQSPDsnLINSNF-LYFVNKAQNFSFFEKVDINRFGAIPNWPEGFFDQTDKEIEK 613
Cdd:COG4938   190 LANSGVQVIIETHSDYILNGLRNLIKEGKL--LDPDDVaVYFFERDGGGSELRRIEIDENGIISDWPDGFFDEVSEDLAE 267

                         250
                  ....*....|
gi 1104815437 614 ILIAASNKSK 623
Cdd:COG4938   268 LFEALLEKED 277
AAA_21 pfam13304
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ...
 459-553 1.25e-08

AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.


Pssm-ID: 433102 [Multi-domain]  Cd Length: 303  Bit Score: 57.01  E-value: 1.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 459 EIEVGDRGELGYNLQVKNVNDKKLQGLSHVGVGVSQVLPIIVMML-LSEKNDILILEQPELHLHPKSQSRLCDLIIACST 537
Cdd:pfam13304 208 KSLLVDDRLRERGLILLENGGGGELPAFELSDGTKRLLALLAALLsALPKGGLLLIDEPESGLHPKLLRRLLELLKELSR 287

                          90
                  ....*....|....*.
gi 1104815437 538 TERQCIIETHSEYIIN 553
Cdd:pfam13304 288 NGAQLILTTHSPLLLD 303
COG4637 COG4637
Predicted ATPase [General function prediction only];
1-102 3.32e-07

Predicted ATPase [General function prediction only];


Pssm-ID: 443675 [Multi-domain]  Cd Length: 371  Bit Score: 53.01  E-value: 3.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437   1 MINNISIHNFKSLNTSDpIEMGSCLFLCGPNSSGKSSFIQAILMIAQTFSRNYKDGrVVLNGGfiklgvFENILSYS--T 78
Cdd:COG4637     1 MITRIRIKNFKSLRDLE-LPLGPLTVLIGANGSGKSNLLDALRFLSDAARGGLQDA-LARRGG------LEELLWRGprT 72

                          90       100
                  ....*....|....*....|....
gi 1104815437  79 DSNEILISFELFPENEFLKKYGIQ 102
Cdd:COG4637    73 ITEPIRLELEFAEEDERDLRYELE 96
AAA_21 pfam13304
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ...
 29-264 4.99e-05

AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.


Pssm-ID: 433102 [Multi-domain]  Cd Length: 303  Bit Score: 45.84  E-value: 4.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437  29 GPNSSGKSSFIQAILMIAQTFsrNYKDGRVVLNGGFIKLGVFENILSYSTDSNEILISFELFPENEFLKKYGIQKIY--L 106
Cdd:pfam13304   6 GPNGSGKSNLLEALRFLADFD--ALVIGLTDERSRNGGIGGIPSLLNGIDPKEPIEFEISEFLEDGVRYRYGLDLERedV 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 107 EFSFGAIDSDVDKRQYNPELNRVKVIAFSNNGGlanLNHKLSFEVEKSSLIRLDLYGED-IADLEKVYPGYVFTGVSKFD 185
Cdd:pfam13304  84 EEKLSSKPTLLEKRLLLREDSEEREPKFPPEAE---ELRLGLDVEERIELSLSELSDLIsGLLLLSIISPLSFLLLLDEG 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1104815437 186 GFIPTKIQLNYQVSKKISQDLIPLMinEEKFLFKKNIFKDVEKKELSNIFIPEVFAIRIVELISDKLNNLKRELNIPSE 264
Cdd:pfam13304 161 LLLEDWAVLDLAADLALFPDLKELL--QRLVRGLKLADLNLSDLGEGIEKSLLVDDRLRERGLILLENGGGGELPAFEL 237
 
Name Accession Description Interval E-value
COG4938 COG4938
Predicted ATPase [General function prediction only];
376-623 8.32e-46

Predicted ATPase [General function prediction only];


Pssm-ID: 443965 [Multi-domain]  Cd Length: 277  Bit Score: 163.60  E-value: 8.32e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 376 GIKYLGPLRNAPGPFYDTNQYDDESVGLRGEFTAALLYKKKNMmisynfpilfnkeqnIKFEERRDTLYDACISWLSYLG 455
Cdd:COG4938    47 NFIYLPAERSGPARLYPSLVRELSDLGSRGEYTADFLAELENL---------------EILDDKSKELLEQVEEWLEKIF 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 456 vLTEIEVgDRGELGYNLQVKNVNDKKLQGLSHVGVGVSQVLPIIVMML-LSEKNDILILEQPELHLHPKSQSRLCDLIIA 534
Cdd:COG4938   112 -PGKVEV-DASSDLVRLVFRPSGNGKRIPLSNVGSGVSELLPILLALLsAAKPGSLLIIEEPEAHLHPKAQSALAELLAE 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 535 CSTTERQCIIETHSEYIINRLRLRIAQSPDsnLINSNF-LYFVNKAQNFSFFEKVDINRFGAIPNWPEGFFDQTDKEIEK 613
Cdd:COG4938   190 LANSGVQVIIETHSDYILNGLRNLIKEGKL--LDPDDVaVYFFERDGGGSELRRIEIDENGIISDWPDGFFDEVSEDLAE 267

                         250
                  ....*....|
gi 1104815437 614 ILIAASNKSK 623
Cdd:COG4938   268 LFEALLEKED 277
AAA_21 pfam13304
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ...
 459-553 1.25e-08

AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.


Pssm-ID: 433102 [Multi-domain]  Cd Length: 303  Bit Score: 57.01  E-value: 1.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 459 EIEVGDRGELGYNLQVKNVNDKKLQGLSHVGVGVSQVLPIIVMML-LSEKNDILILEQPELHLHPKSQSRLCDLIIACST 537
Cdd:pfam13304 208 KSLLVDDRLRERGLILLENGGGGELPAFELSDGTKRLLALLAALLsALPKGGLLLIDEPESGLHPKLLRRLLELLKELSR 287

                          90
                  ....*....|....*.
gi 1104815437 538 TERQCIIETHSEYIIN 553
Cdd:pfam13304 288 NGAQLILTTHSPLLLD 303
YbjD COG3593
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ...
 485-558 1.62e-08

Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];


Pssm-ID: 442812 [Multi-domain]  Cd Length: 359  Bit Score: 56.93  E-value: 1.62e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1104815437 485 LSHVGVGVSQVLPIIVMMLLSE-----KNDILILEQPELHLHPKSQSRLCDLIIACSTTERQCIIETHSEYIINRLRLR 558
Cdd:COG3593   160 LDRLGSGFQRLILLALLSALAElkrapANPILLIEEPEAHLHPQAQRRLLKLLKELSEKPNQVIITTHSPHLLSEVPLE 238
COG4637 COG4637
Predicted ATPase [General function prediction only];
1-102 3.32e-07

Predicted ATPase [General function prediction only];


Pssm-ID: 443675 [Multi-domain]  Cd Length: 371  Bit Score: 53.01  E-value: 3.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437   1 MINNISIHNFKSLNTSDpIEMGSCLFLCGPNSSGKSSFIQAILMIAQTFSRNYKDGrVVLNGGfiklgvFENILSYS--T 78
Cdd:COG4637     1 MITRIRIKNFKSLRDLE-LPLGPLTVLIGANGSGKSNLLDALRFLSDAARGGLQDA-LARRGG------LEELLWRGprT 72

                          90       100
                  ....*....|....*....|....
gi 1104815437  79 DSNEILISFELFPENEFLKKYGIQ 102
Cdd:COG4637    73 ITEPIRLELEFAEEDERDLRYELE 96
AAA_15 pfam13175
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
 211-552 7.82e-06

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433011 [Multi-domain]  Cd Length: 392  Bit Score: 48.75  E-value: 7.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 211 INEEKFLFKKNIFKDVEKKELSNIFIPEVFAIRIvELISDKLNNLKRELNIPSEKFNERYVGLESVLTVGLENFKEDFIA 290
Cdd:pfam13175  53 FFEDDFLVLYLKDVIKIDKEDLNIFENISFSIDI-EIDVEFLLILFGYLEIKKKYLCLASKGKAKEYEKTLHPKGANKAD 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 291 INFKLNSSDIPEHFLKAKTHIREWQYLIENLEQEKRQQLIVLldenraqlqeiwFENSKRLIANAEYEMPVLAEINEIIY 370
Cdd:pfam13175 132 LLLELKISDLKKYLKQFKIYIYNNYYLDEKKNVFDKKSKYEL------------PSLKEEFLNSEKEEIKVDKEDLKKLI 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 371 KHFARGIKYLGPLRNAPGPFYDTNQYD-DESVGLRGEFTAALLYKKKNMMISYNFPILFNKEQNIKFEERRDTLYDACIS 449
Cdd:pfam13175 200 NELEKSINYHENVLENLQIKKLLISADrNASDEDSEKINSLLGALKQRIFEEALQEELELTEKLKETQNKLKEIDKTLAE 279

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 450 WLSYLGVLTEIEVGDRGELGYNLQVKNVN-DKKLQGLSHVGVGVSQVLPIIVMMLLSE--------KNDILILEQPELHL 520
Cdd:pfam13175 280 ELKNILFKKIDKLKDFGYPPFLNPEIEIKkDDEDLPLNKNGSGVQRLILLIFFIAEAErkedeieeKNVILAIEEPEAHL 359

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1104815437 521 HPKSQSRLCDLIIACSTTER-QCIIETHSEYII 552
Cdd:pfam13175 360 HPQAQRVLIKLLKELANDNKtQVIITTHSPHII 392
COG4938 COG4938
Predicted ATPase [General function prediction only];
2-131 1.37e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443965 [Multi-domain]  Cd Length: 277  Bit Score: 47.27  E-value: 1.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437   2 INNISIHNFKSLNTSDpIEMGSCLFLCGPNSSGKSSFIQAILMIAQT-----------FSRNYK-----DGRVVLNGGFI 65
Cdd:COG4938     1 IKSISIKNFGPFKEAE-LELKPLTLLIGPNGSGKSTLIQALLLLLQSnfiylpaersgPARLYPslvreLSDLGSRGEYT 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1104815437  66 K--LGVFENILSYSTDSNEILISFelfpeNEFLKKYGIQKIYLEfsfgaIDSDVDKRQYNPELNRVKV 131
Cdd:COG4938    80 AdfLAELENLEILDDKSKELLEQV-----EEWLEKIFPGKVEVD-----ASSDLVRLVFRPSGNGKRI 137
AAA_21 pfam13304
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ...
 29-264 4.99e-05

AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.


Pssm-ID: 433102 [Multi-domain]  Cd Length: 303  Bit Score: 45.84  E-value: 4.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437  29 GPNSSGKSSFIQAILMIAQTFsrNYKDGRVVLNGGFIKLGVFENILSYSTDSNEILISFELFPENEFLKKYGIQKIY--L 106
Cdd:pfam13304   6 GPNGSGKSNLLEALRFLADFD--ALVIGLTDERSRNGGIGGIPSLLNGIDPKEPIEFEISEFLEDGVRYRYGLDLERedV 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 107 EFSFGAIDSDVDKRQYNPELNRVKVIAFSNNGGlanLNHKLSFEVEKSSLIRLDLYGED-IADLEKVYPGYVFTGVSKFD 185
Cdd:pfam13304  84 EEKLSSKPTLLEKRLLLREDSEEREPKFPPEAE---ELRLGLDVEERIELSLSELSDLIsGLLLLSIISPLSFLLLLDEG 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1104815437 186 GFIPTKIQLNYQVSKKISQDLIPLMinEEKFLFKKNIFKDVEKKELSNIFIPEVFAIRIVELISDKLNNLKRELNIPSE 264
Cdd:pfam13304 161 LLLEDWAVLDLAADLALFPDLKELL--QRLVRGLKLADLNLSDLGEGIEKSLLVDDRLRERGLILLENGGGGELPAFEL 237
COG4637 COG4637
Predicted ATPase [General function prediction only];
495-603 6.01e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443675 [Multi-domain]  Cd Length: 371  Bit Score: 45.69  E-value: 6.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 495 VLPIIVMMLLSEKNDILILEQPELHLHPKSQSRLCDLIIAcSTTERQCIIETHSEYIINRLRLriaqspdsnlinSNFLY 574
Cdd:COG4637   266 FLALLAALLSPRPPPLLCIEEPENGLHPDLLPALAELLRE-ASERTQVIVTTHSPALLDALEP------------EEVLV 332

                          90       100
                  ....*....|....*....|....*....
gi 1104815437 575 FVNKAQNFSFFEKVDINrfgAIPNWPEGF 603
Cdd:COG4637   333 LEREDDGETRIRRLSDL---ELPEWLEGY 358
DUF3696 pfam12476
Protein of unknown function (DUF3696); This domain family is found in bacteria and archaea, ...
 590-614 8.56e-05

Protein of unknown function (DUF3696); This domain family is found in bacteria and archaea, and is approximately 50 amino acids in length.


Pssm-ID: 432583  Cd Length: 53  Bit Score: 40.35  E-value: 8.56e-05
                          10        20
                  ....*....|....*....|....*
gi 1104815437 590 INRFGAIPNWPEGFFDQTDKEIEKI 614
Cdd:pfam12476  29 IDENGRIDNWPEGFFDQWDKDLAEL 53
SbcC COG0419
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
1-42 1.11e-03

DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];


Pssm-ID: 440188 [Multi-domain]  Cd Length: 204  Bit Score: 40.76  E-value: 1.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1104815437   1 MINNISIHNFKSLNTSDPIEMGSCLFL-CGPNSSGKSSFIQAI 42
Cdd:COG0419     1 KLLRLRLENFRSYRDTETIDFDDGLNLiVGPNGAGKSTILEAI 43
AAA_15 pfam13175
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
 2-301 1.46e-03

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433011 [Multi-domain]  Cd Length: 392  Bit Score: 41.43  E-value: 1.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437   2 INNISIHNFKSLNTSDpIEMGSCL-FLCGPNSSGKSSFIQAI-LMIAQTFSRNYKDGRVVLNGGFIKL-GVFENILSYST 78
Cdd:pfam13175   3 IKSIIIKNFRCLKDTE-IDLDEDLtVLIGKNNSGKSSILEALdIFLNNKEKFFEDDFLVLYLKDVIKIdKEDLNIFENIS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437  79 DSNEILISFElFPENEFlKKYGIQKIYLEFSFGAIDSDVDKRQYNPELNRVKVIafsnnGGLANLNHKLSFEVEKSSLIR 158
Cdd:pfam13175  82 FSIDIEIDVE-FLLILF-GYLEIKKKYLCLASKGKAKEYEKTLHPKGANKADLL-----LELKISDLKKYLKQFKIYIYN 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1104815437 159 LDLYGEDIADLEKVYPGYVFTGVSKFDGFIPTKIQLNYQVSKKISQDLIPLMINEEKFLFKKNIFKDV--EKKELSNIFI 236
Cdd:pfam13175 155 NYYLDEKKNVFDKKSKYELPSLKEEFLNSEKEEIKVDKEDLKKLINELEKSINYHENVLENLQIKKLLisADRNASDEDS 234

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1104815437 237 pEVFAIRIVELISDKLNNLKRELNIPSEKFNERYVGLESVLTVGLENFKEDFIAINFKLNSSDIP 301
Cdd:pfam13175 235 -EKINSLLGALKQRIFEEALQEELELTEKLKETQNKLKEIDKTLAEELKNILFKKIDKLKDFGYP 298
YbjD COG3593
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ...
 2-42 3.08e-03

Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];


Pssm-ID: 442812 [Multi-domain]  Cd Length: 359  Bit Score: 40.37  E-value: 3.08e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1104815437   2 INNISIHNFKSLNTSDpIEMGSCL-FLCGPNSSGKSSFIQAI 42
Cdd:COG3593     3 LEKIKIKNFRSIKDLS-IELSDDLtVLVGENNSGKSSILEAL 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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