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Conserved domains on  [gi|1092688838|ref|WP_070621460|]
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MULTISPECIES: minor capsid protein [Enterococcus]

Protein Classification

minor capsid protein( domain architecture ID 10577426)

minor capsid protein is involved in formation of the phage capsid

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Minor_capsid_3 pfam12691
Bacteriophage minor capsid protein; This family is from one of three adjacent genes, all of ...
 12-127 1.60e-11

Bacteriophage minor capsid protein; This family is from one of three adjacent genes, all of which are involved in formation of the minor phage capsid.


:

Pssm-ID: 432722  Cd Length: 117  Bit Score: 57.06  E-value: 1.60e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092688838  12 NTIAGLPIKIRKGYLSADESLVIYPLPGGQVITEFYDGIKDqqLNYEIAMKSKDGDKIEQALWLISDYLEQLEeITSSNN 91
Cdd:pfam12691   5 AGLGVVGPDGFLGYLPDSPDRAVAVYPGGGSPPDTMTGYRE--PRFQVIVRSADYRDAEALAWQIYDLLHGLN-REEIGG 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1092688838  92 SFEFNNLTISSKPFINDADEQGWFVFLLDFQVKLTT 127
Cdd:pfam12691  82 DDELLSVQVSETPALLGRDESGRYEYSLNFKLILEI 117
 
Name Accession Description Interval E-value
Minor_capsid_3 pfam12691
Bacteriophage minor capsid protein; This family is from one of three adjacent genes, all of ...
 12-127 1.60e-11

Bacteriophage minor capsid protein; This family is from one of three adjacent genes, all of which are involved in formation of the minor phage capsid.


Pssm-ID: 432722  Cd Length: 117  Bit Score: 57.06  E-value: 1.60e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092688838  12 NTIAGLPIKIRKGYLSADESLVIYPLPGGQVITEFYDGIKDqqLNYEIAMKSKDGDKIEQALWLISDYLEQLEeITSSNN 91
Cdd:pfam12691   5 AGLGVVGPDGFLGYLPDSPDRAVAVYPGGGSPPDTMTGYRE--PRFQVIVRSADYRDAEALAWQIYDLLHGLN-REEIGG 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1092688838  92 SFEFNNLTISSKPFINDADEQGWFVFLLDFQVKLTT 127
Cdd:pfam12691  82 DDELLSVQVSETPALLGRDESGRYEYSLNFKLILEI 117
 
Name Accession Description Interval E-value
Minor_capsid_3 pfam12691
Bacteriophage minor capsid protein; This family is from one of three adjacent genes, all of ...
 12-127 1.60e-11

Bacteriophage minor capsid protein; This family is from one of three adjacent genes, all of which are involved in formation of the minor phage capsid.


Pssm-ID: 432722  Cd Length: 117  Bit Score: 57.06  E-value: 1.60e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1092688838  12 NTIAGLPIKIRKGYLSADESLVIYPLPGGQVITEFYDGIKDqqLNYEIAMKSKDGDKIEQALWLISDYLEQLEeITSSNN 91
Cdd:pfam12691   5 AGLGVVGPDGFLGYLPDSPDRAVAVYPGGGSPPDTMTGYRE--PRFQVIVRSADYRDAEALAWQIYDLLHGLN-REEIGG 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1092688838  92 SFEFNNLTISSKPFINDADEQGWFVFLLDFQVKLTT 127
Cdd:pfam12691  82 DDELLSVQVSETPALLGRDESGRYEYSLNFKLILEI 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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