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Conserved domains on  [gi|1056708207|ref|WP_068133114|]
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carbohydrate ABC transporter permease [Limnochorda pilosa]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 24-282 1.26e-79

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 241.92  E-value: 1.26e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  24 PTLGLLVSSVRPAADVASSGWWTVFRNPldltqyTLANYRQVLYQNGMAQAFVNSFIVTVPATLIPMLIAAFAAFAFAWF 103
Cdd:COG0395    31 PLYWMVVTSFKPPAEIFSGPPSLLPSEF------TLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARF 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 104 TFPGRDALFLMVVGLLVVPLQMTLIPVLRIYNSLGLSGTFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGAS 183
Cdd:COG0395   105 RFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGAS 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 184 PLTAFFRLALPLSVPALASLGIFQFLWVWNDLLVSLIYLgGSPSVAPLTLRLSSLVGSLGQNWHLLTAAAFVAMVVPVAV 263
Cdd:COG0395   185 EFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILL-TSPDLRTLPVGLASFQGQYGTDWGLLMAAAVIATLPVLIL 263

                         250
                  ....*....|....*....
gi 1056708207 264 FFALQRYFVRGILAGAVKG 282
Cdd:COG0395   264 FLFLQRYFVRGLTAGAVKG 282
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 24-282 1.26e-79

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 241.92  E-value: 1.26e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  24 PTLGLLVSSVRPAADVASSGWWTVFRNPldltqyTLANYRQVLYQNGMAQAFVNSFIVTVPATLIPMLIAAFAAFAFAWF 103
Cdd:COG0395    31 PLYWMVVTSFKPPAEIFSGPPSLLPSEF------TLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARF 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 104 TFPGRDALFLMVVGLLVVPLQMTLIPVLRIYNSLGLSGTFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGAS 183
Cdd:COG0395   105 RFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGAS 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 184 PLTAFFRLALPLSVPALASLGIFQFLWVWNDLLVSLIYLgGSPSVAPLTLRLSSLVGSLGQNWHLLTAAAFVAMVVPVAV 263
Cdd:COG0395   185 EFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILL-TSPDLRTLPVGLASFQGQYGTDWGLLMAAAVIATLPVLIL 263

                         250
                  ....*....|....*....
gi 1056708207 264 FFALQRYFVRGILAGAVKG 282
Cdd:COG0395   264 FLFLQRYFVRGLTAGAVKG 282
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
76-276 4.62e-22

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 92.88  E-value: 4.62e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  76 VNSFIVTVPATLIPMLIAAFAAFAFAWFTFPGRDALFLMVVGLLVVPLQMTLIPVLRIYNSLGLSGTFLGIWLAHAGYGL 155
Cdd:PRK10973   78 LNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASAT 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 156 pfAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQFLWVWNDLLVS-LIYLGGSPSVAPLTLR 234
Cdd:PRK10973  158 --ATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPlLIITDVSLGTAVAGIK 235

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1056708207 235 LSSLVGSLGQNWHLLTAAAFVAMVVPVAVFFALQRYFVRGIL 276
Cdd:PRK10973  236 GMIATGEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLV 277
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 75-259 2.10e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 58.83  E-value: 2.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  75 FVNSFIVTVPATLIPMLIAAFAAFAFAWFTFPGRDALFLMVVGLLVVPLQMTLIPVLRIYNSLGLSGTFLGIWLAHA--- 151
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALila 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 152 -GYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQFLWVWNDLLVSLIyLGGSPSVAP 230
Cdd:cd06261    81 lLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSF-LGGGEAPGP 159

                         170       180
                  ....*....|....*....|....*....
gi 1056708207 231 LTLRLSSLVGSLGQNWHLLTAAAFVAMVV 259
Cdd:cd06261   160 GTGLLLIFAILFPGDLGVAAAVALILLLL 188
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 108-275 2.09e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.77  E-value: 2.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 108 RDALFLMVVGLLVVPLQMTLIPVLRIYNSLGLSGTFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTA 187
Cdd:pfam00528  17 DRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQI 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 188 FFRLALPLSVPALASLGIFQFLWVWNDLLVSLIYLGGSPSVAPLTLRLSSLVGSLGQnwhLLTAAAFVAMVVPVAVFFAL 267
Cdd:pfam00528  97 FRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQ---GPVLAAALILLLLNLLVDIL 173


                  ....*...
gi 1056708207 268 QRYFVRGI 275
Cdd:pfam00528 174 QRLLDPRV 181
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 78-208 6.27e-07

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 48.78  E-value: 6.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  78 SFIVTVPATLIPMLIAAFAAFAFAWFTFPGRDALFLMVVGLLVVPLQMTLIPVLRIYNSLGLSG------------TFLG 145
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGkllelfgislvfTFTG 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1056708207 146 IWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQF 208
Cdd:TIGR02141  83 AVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSF 145
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 24-282 1.26e-79

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 241.92  E-value: 1.26e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  24 PTLGLLVSSVRPAADVASSGWWTVFRNPldltqyTLANYRQVLYQNGMAQAFVNSFIVTVPATLIPMLIAAFAAFAFAWF 103
Cdd:COG0395    31 PLYWMVVTSFKPPAEIFSGPPSLLPSEF------TLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARF 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 104 TFPGRDALFLMVVGLLVVPLQMTLIPVLRIYNSLGLSGTFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGAS 183
Cdd:COG0395   105 RFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGAS 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 184 PLTAFFRLALPLSVPALASLGIFQFLWVWNDLLVSLIYLgGSPSVAPLTLRLSSLVGSLGQNWHLLTAAAFVAMVVPVAV 263
Cdd:COG0395   185 EFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILL-TSPDLRTLPVGLASFQGQYGTDWGLLMAAAVIATLPVLIL 263

                         250
                  ....*....|....*....
gi 1056708207 264 FFALQRYFVRGILAGAVKG 282
Cdd:COG0395   264 FLFLQRYFVRGLTAGAVKG 282
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 55-282 2.08e-39

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 138.75  E-value: 2.08e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  55 TQYTLANYRQVLYQNGMAQAFVNSFIVTVPATLIPMLIAAFAAFAFAWFTFPGRDALFLMVVGLLVVPLQMTLIPVLRIY 134
Cdd:COG3833    55 ENFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAFSRFRFKGRKAGLLALLLLQMFPAFLALVALYLLL 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 135 NSLGLSGTFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQFLWVWND 214
Cdd:COG3833   135 SALGLLNTLLGLILVYLGGAIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWND 214

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1056708207 215 LLVSLIYLgGSPSVAPLTLRLSSLV-GSLGQNWHLLTAAAFVAMVVPVAVFFALQRYFVRGILAGAVKG 282
Cdd:COG3833   215 FILASVLL-RSPENYTLAVGLYSFVsDQRNTNWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
76-276 4.62e-22

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 92.88  E-value: 4.62e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  76 VNSFIVTVPATLIPMLIAAFAAFAFAWFTFPGRDALFLMVVGLLVVPLQMTLIPVLRIYNSLGLSGTFLGIWLAHAGYGL 155
Cdd:PRK10973   78 LNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASAT 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 156 pfAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQFLWVWNDLLVS-LIYLGGSPSVAPLTLR 234
Cdd:PRK10973  158 --ATFLFRQFFMTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPlLIITDVSLGTAVAGIK 235

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1056708207 235 LSSLVGSLGQNWHLLTAAAFVAMVVPVAVFFALQRYFVRGIL 276
Cdd:PRK10973  236 GMIATGEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGLV 277
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 57-274 7.92e-22

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 91.71  E-value: 7.92e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  57 YTLANYRQVLYQNGMAQAFVNSFIVTVPATLIPMLIAAFAAFAFAWFTFPGRDALFLMVVGLLVVPLQMTLIPVLRIYNS 136
Cdd:COG1177    45 FTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSA 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 137 LGLSGTFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQFLWVWNDLL 216
Cdd:COG1177   125 LGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFV 204

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1056708207 217 VSLIYlgGSPSVAPLTLRLSSLVGSlgQNWHLLTAAAFVAMVVPVAVFFALQRYFVRG 274
Cdd:COG1177   205 ITLFL--AGPGVTTLPVYIYSMIRR--GISPEINALSTLLILLSLLLLLLAERLRRRG 258
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 75-259 2.10e-10

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 58.83  E-value: 2.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  75 FVNSFIVTVPATLIPMLIAAFAAFAFAWFTFPGRDALFLMVVGLLVVPLQMTLIPVLRIYNSLGLSGTFLGIWLAHA--- 151
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALila 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 152 -GYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQFLWVWNDLLVSLIyLGGSPSVAP 230
Cdd:cd06261    81 lLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSF-LGGGEAPGP 159

                         170       180
                  ....*....|....*....|....*....
gi 1056708207 231 LTLRLSSLVGSLGQNWHLLTAAAFVAMVV 259
Cdd:cd06261   160 GTGLLLIFAILFPGDLGVAAAVALILLLL 188
malG PRK10998
maltose ABC transporter permease MalG;
137-282 5.40e-10

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 58.95  E-value: 5.40e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 137 LGLSgTFLGIWLAHAGyGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQFLWVWNDLL 216
Cdd:PRK10998  154 IGLN-THGGVIFAYLG-GIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVP 231

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1056708207 217 VSLIYLggsPSVAPLTLRLSSLVGSLGQN--WHLLTAAAFVAMVVPVAVFFALQRYFVRGILAGAVKG 282
Cdd:PRK10998  232 VASLLL---RDVNSYTLAVGMQQYLNPQNylWGDFAAAAVLSAIPITVVFLLAQRWLVGGLTAGGVKG 296
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
59-274 5.59e-10

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 59.40  E-value: 5.59e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  59 LANYRQVLYQNGMAQAFVNSFIVTVPATLIPMLIAAFAAFAFAWFTFPGRDALFLMVVGLLVVPLQMTLIPVLRIYNSLG 138
Cdd:COG1178    40 LANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNG 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 139 LSGTFL---------------GIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASL 203
Cdd:COG1178   120 LLNTLLralfgleppdiyglgGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAG 199

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1056708207 204 GIFQFLWVWNDLLVSLiYLGGSPSVapLTLRLSSLVGSLGQnwhlLTAAAFVA--MVVPVAVFFALQRYFVRG 274
Cdd:COG1178   200 ALLVFLLCLADFGTPL-VLGGGYTT--LTTAIYQAWLGDFD----LGAAAALAlvLLLLVLLLLLLERRLRRR 265
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 57-279 1.24e-09

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 57.85  E-value: 1.24e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  57 YTLANYRQVLYQNGMAQAFVNSFIVTVPATLIPMLIAAFAAFAFAWFTFPGRDALFLMV-----VGLLVV---------- 121
Cdd:COG1176    51 FTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVilpfwTSFLVRtyawivllgr 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 122 --PLQMTLIPVLRIYNSLGLSGTFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPA 199
Cdd:COG1176   131 ngLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPG 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 200 LASLGIFQFLWVWNDLLVSLIyLGGsPSVAPLTLRLSSLVGSlGQNWHLLTAAAFVAMVVPVAVFFALQRYFVRGILAGA 279
Cdd:COG1176   211 IIAGSLLVFIPALGAFVTPAL-LGG-GKVLMIGNLIYQQFLS-ALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLGG 287
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
56-269 1.61e-09

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 58.25  E-value: 1.61e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  56 QYTLANYRQVLYQNGMAQAFVNSFIVTVPATLIPMLIAAFAAFAFAWFTFPGRDALFLMVVGLLVVP---LQMTLIPVLR 132
Cdd:COG1178   321 NLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPgivLGLGLLLLFN 400

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 133 IYNSLGLSGTFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQFLWVW 212
Cdd:COG1178   401 RPLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSM 480

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1056708207 213 NDLlvSLIYLGGSPSVAPLTLRLSSLVGSLgqNWHLLTAAAFVAMVVPVAVFFALQR 269
Cdd:COG1178   481 KEL--SATLLLRPPGFETLAVLIYQLASSG--RYGEAAALALLLVLVSLLPVLLLER 533
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 108-275 2.09e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.77  E-value: 2.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 108 RDALFLMVVGLLVVPLQMTLIPVLRIYNSLGLSGTFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTA 187
Cdd:pfam00528  17 DRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQI 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 188 FFRLALPLSVPALASLGIFQFLWVWNDLLVSLIYLGGSPSVAPLTLRLSSLVGSLGQnwhLLTAAAFVAMVVPVAVFFAL 267
Cdd:pfam00528  97 FRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQ---GPVLAAALILLLLNLLVDIL 173


                  ....*...
gi 1056708207 268 QRYFVRGI 275
Cdd:pfam00528 174 QRLLDPRV 181
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 57-239 1.07e-08

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 54.61  E-value: 1.07e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  57 YTLANYRQVLYQNGMAQAFVNSFIVTVPATLIPMLIAAFAAFAFAWFTFPGRDALFLMVVGLLVVPLQMTLIPVLRIYNS 136
Cdd:PRK09500   41 FTTKWYELLFNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFML 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 137 LGLSGTFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQFLWVWNDLL 216
Cdd:PRK09500  121 LGIQLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVV 200

                         170       180
                  ....*....|....*....|...
gi 1056708207 217 VSLIYLGgsPSVAPLTLRLSSLV 239
Cdd:PRK09500  201 VSSFVTG--PSYEILPLKIYSMV 221
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 142-202 1.97e-07

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 50.43  E-value: 1.97e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1056708207 142 TFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALAS 202
Cdd:COG4149    89 TWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILA 149
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 78-208 6.27e-07

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 48.78  E-value: 6.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  78 SFIVTVPATLIPMLIAAFAAFAFAWFTFPGRDALFLMVVGLLVVPLQMTLIPVLRIYNSLGLSG------------TFLG 145
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGkllelfgislvfTFTG 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1056708207 146 IWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQF 208
Cdd:TIGR02141  83 AVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSF 145
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 142-202 2.57e-06

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 47.82  E-value: 2.57e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1056708207 142 TFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALAS 202
Cdd:COG0555   135 TPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLT 195
malF PRK10999
maltose ABC transporter permease MalF;
146-224 2.58e-05

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 45.34  E-value: 2.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 146 IWLahagyGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQFLWVWND-LLVSLIYLGG 224
Cdd:PRK10999  383 TWL-----GYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNfVLIQLLTNGG 457
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
168-273 3.54e-04

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 41.27  E-value: 3.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 168 SLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQFLWVWNDLLVSLIYLGGSPSVAplTLRLSSLVGSLG-QNW 246
Cdd:COG1175   190 SIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPGNS--TTTLVLYIYQTAfQQF 267

                          90       100
                  ....*....|....*....|....*...
gi 1056708207 247 HLLTAAAF-VAMVVPVAVFFALQRYFVR 273
Cdd:COG1175   268 DFGYASAIaVVLFLIILVLTLLQLRLLR 295
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 142-200 1.02e-03

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 39.62  E-value: 1.02e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1056708207 142 TFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPAL 200
Cdd:TIGR02139 131 TPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPAL 189
cysT CHL00187
sulfate transport protein; Provisional
 132-200 1.90e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 38.84  E-value: 1.90e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1056708207 132 RIYNSLG--LSGTFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPAL 200
Cdd:CHL00187  124 HLLSHLGiqIVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPAL 194
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 59-273 3.68e-03

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 38.51  E-value: 3.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  59 LANYRQVLYQNGMAQAFVNSFIVTVPATLIPMLIAAFAAFAFAWFTFPGRDALFLMVVGLLVVPLQMTLIPVLRIYNSLG 138
Cdd:TIGR03262  40 LANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQG 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 139 LSGTFL---------GIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQFL 209
Cdd:TIGR03262 120 LLKGLLggfsiygfwGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFT 199

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1056708207 210 WVWNDLLVSLIyLGGSPSVapLTLRLSSLVgsLGQNWHLLTAAAFVAMVVPVAVFFALQRYFVR 273
Cdd:TIGR03262 200 LVITDFGVPKV-IGGDYNV--LATDIYKQV--IGQQNFPMGAVVGVLLLLPALLAFGIDRAIQR 258
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 62-266 8.47e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 37.14  E-value: 8.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207  62 YRQVLYQNGMAQAFVNSF-IVTVPATLIPMLIAAFAAFAFAWFTFPGRDALFLMVVGLLVVPLQMTLIPVLRIYNSLGLS 140
Cdd:PRK10592   52 YGELFRDDAMMSAVGLSLtIAACAATAAAILGTIAAVVMVRFGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHA 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1056708207 141 ------GTFLGIWLAHAGYGLPFAVYLLRNFFGSLPSDLFESAYIDGASPLTAFFRLALPLSVPALASLGIFQFLWVWND 214
Cdd:PRK10592  132 igwpadRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDD 211

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1056708207 215 LLVSLIYLGGSPSVAPLtLRLSSLvgSLGQNWHLLTAAAFVAMVVPVAVFFA 266
Cdd:PRK10592  212 LVIASFVSGPGATTLPM-LVFSSV--RMGVNPEINALATLILGVVGIVGFIA 260
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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