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Conserved domains on  [gi|1051411363|ref|WP_065878818|]
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MULTISPECIES: PLDc N-terminal domain-containing protein [unclassified Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12452 super family cl31616
cardiolipin synthase;
38-68 1.98e-03

cardiolipin synthase;


The actual alignment was detected with superfamily member PRK12452:

Pssm-ID: 171510 [Multi-domain]  Cd Length: 509  Bit Score: 34.51  E-value: 1.98e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1051411363  38 WLVILIFVPLLGLIAWAMFG--PKREMAQQRKS 68
Cdd:PRK12452   61 WFLVLALLPVVGVLLYSIFGrsRWRRKKHLHRS 93
 
Name Accession Description Interval E-value
PRK12452 PRK12452
cardiolipin synthase;
38-68 1.98e-03

cardiolipin synthase;


Pssm-ID: 171510 [Multi-domain]  Cd Length: 509  Bit Score: 34.51  E-value: 1.98e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1051411363  38 WLVILIFVPLLGLIAWAMFG--PKREMAQQRKS 68
Cdd:PRK12452   61 WFLVLALLPVVGVLLYSIFGrsRWRRKKHLHRS 93
PLDc_N pfam13396
Phospholipase_D-nuclease N-terminal; This family is often found at the very N-terminus of ...
 20-58 4.52e-03

Phospholipase_D-nuclease N-terminal; This family is often found at the very N-terminus of proteins from the phospholipase_D-nuclease family, PLDc, pfam00614. However, a large number of members are full-length within this family.


Pssm-ID: 463867 [Multi-domain]  Cd Length: 43  Bit Score: 31.20  E-value: 4.52e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1051411363 20 WAINVVLRSTGGWETKGLWLVILIFVPLLGLIAWAMFGP 58
Cdd:pfam13396  5 IALIDIIRRRRNPSSKLAWLLVILFLPVLGPILYLLFGR 43
 
Name Accession Description Interval E-value
PRK12452 PRK12452
cardiolipin synthase;
38-68 1.98e-03

cardiolipin synthase;


Pssm-ID: 171510 [Multi-domain]  Cd Length: 509  Bit Score: 34.51  E-value: 1.98e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1051411363  38 WLVILIFVPLLGLIAWAMFG--PKREMAQQRKS 68
Cdd:PRK12452   61 WFLVLALLPVVGVLLYSIFGrsRWRRKKHLHRS 93
cls PRK01642
cardiolipin synthetase; Reviewed
 38-57 3.42e-03

cardiolipin synthetase; Reviewed


Pssm-ID: 234967 [Multi-domain]  Cd Length: 483  Bit Score: 33.60  E-value: 3.42e-03
                          10        20
                  ....*....|....*....|
gi 1051411363  38 WLVILIFVPLLGLIAWAMFG 57
Cdd:PRK01642   37 WLLILYILPYVGIIAYLLFG 56
PLDc_N pfam13396
Phospholipase_D-nuclease N-terminal; This family is often found at the very N-terminus of ...
 20-58 4.52e-03

Phospholipase_D-nuclease N-terminal; This family is often found at the very N-terminus of proteins from the phospholipase_D-nuclease family, PLDc, pfam00614. However, a large number of members are full-length within this family.


Pssm-ID: 463867 [Multi-domain]  Cd Length: 43  Bit Score: 31.20  E-value: 4.52e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1051411363 20 WAINVVLRSTGGWETKGLWLVILIFVPLLGLIAWAMFGP 58
Cdd:pfam13396  5 IALIDIIRRRRNPSSKLAWLLVILFLPVLGPILYLLFGR 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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