|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13826 |
PRK13826 |
Dtr system oriT relaxase; Provisional |
1-1099 |
0e+00 |
|
Dtr system oriT relaxase; Provisional
Pssm-ID: 237524 [Multi-domain] Cd Length: 1102 Bit Score: 2140.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 1 MAIAHFSASIISRGDGRSVVLSAAYRHCAKMEYEREARTIDYTRKQGLLHEEFMLPADAPKWAKALIADRAVSGAVEAFW 80
Cdd:PRK13826 1 MAIPHFSVSIVSRGSGRSAVLSAAYRHCAKMEYEREARTIDYTRKQGLLHEEFVLPADAPEWVRSMIADRSVSGASEAFW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 81 NKVEAFEKRSDAQLARDLTIALPLELTPEQNIALVRDFVEKHIRAKGMVADWVYHDNPGNPHIHLMTTLRPLTEDGFGSK 160
Cdd:PRK13826 81 NKVEAFEKRSDAQLAKDVTIALPLELTAEQNIALVRDFVEKHILAKGMVADWVYHDAPGNPHVHLMTTLRPLTEDGFGAK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 161 KVAVTAKDGQPVRTKSGKILYELWAGSTDDFNVLRDGWFERLNHHLALAEIDLRIDGRSYEKQGIELEPTIHLGVGAKAI 240
Cdd:PRK13826 161 KVAVIGEDGQPVRTDAGKIVYELWAGSTDDFNALRDGWFACQNHHLALAGLDLRIDGRSYEKQGIELEPTIHLGVGAKAI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 241 ERKAQDQGVRPELERIELNEERRSENTRRILNNPAIVLDLITREKSVFDERDIAKVLHRYIDDPAVFQQLMVRIILNPEV 320
Cdd:PRK13826 241 ERKAEQQGVRPELERIELQEERRSENARRIQRRPEIVLDLITREKSVFDERDVAKVLHRYVDDPAVFQSLMARILQSPEV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 321 LRLQRETIDFATAKKVPARYSTRAMIRLEATMAWQATWLSNREGRGVSHSALEATFKRHERLSDEQKAAIERIAGPARIA 400
Cdd:PRK13826 321 LRLERERIDFATGIRVPARYTTRAMIRLEAEMARRAIWLSGRSSHGVREAVLAATFARHARLSDEQKTAIEHVAGPARIA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 401 AVVGRAGAGKTTMMKAAREAWELAGYRVVGGALAGKAAEGLSSEAGIESRTLSSWELRWNRGRDVLDNKTVFVMDEAGMV 480
Cdd:PRK13826 401 AVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGMV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 481 ASKQMAGFVDAVVRAGAKIVLVGDPEQLQPIEAGAAFRAIVDRIGYAELETIYRQREDWMRKASLDLARGNVEKALALYN 560
Cdd:PRK13826 481 ASRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQREQWMRDASLDLARGNVGKALDAYR 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 561 ANAGIVGERLKAEAVERLIAHWNHDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGEGHVFRTADGERRFDAGDQI 640
Cdd:PRK13826 561 ANGRVIGSRLKAEAVESLIADWNRDYDPTKTTLILAHLRRDVRMLNEMARAKLVERGIVGEGHAFRTADGERRFAAGDQI 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 641 VFLKNETSLGVKNGMIGHVVEAAPNRIVAVVGDRDHRRHVVVEQRFYRNLDHGYATTIHKSQGATVDRVKVLASLSLDRH 720
Cdd:PRK13826 641 VFLKNEGSLGVKNGMIGKVVEAAPNRIVAEIGEGEHRRQVTVEQRFYNNLDHGYATTIHKSQGATVDRVKVLASLSLDRH 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 721 LTYVAMTRHREDLQLYYGRRSFAFNGGLAKVLSRKNAKETTLDYERGKLYREALRFAENRGLHIMQVARTMLRDRLDWTL 800
Cdd:PRK13826 721 LTYVAMTRHREDLQLYYGRRSFAFNGGLIPVLSRRNAKETTLDYERGKLYRQALRFAENRGLHLVNVARTLARDRLDWTL 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 801 RQKTKVSDLVHRLRALGERLGSDQSPKTQTM---KEAAPMVAGIKTFSGSVADTIGDKLGADPTLKQQWEEVSARFRYVF 877
Cdd:PRK13826 801 RQKQKLADLGARLRAIGERLGLAQSPKTQTMqnsKEAAPMVAGITTFPKSVADTVEDKLAADPALKKQWEEVSTRFHLVY 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 878 ADPVTAFRAINFDTVLADKEMAKQVLQKLEAEPETIGPLKGKTGILAGKAEREARRIAEVNVPSLKRDLEQYLQMRETAT 957
Cdd:PRK13826 881 ADPETAFKAVNFDAMLKDKEVAKSTLQKLAAEPESFGALKGKTGILASKADRQDRERAEVNVPALKRDLERYLRMREEAE 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 958 MRHQADEQTLRQRVSIDIPALSPAARVVLERVRDAIDRNDLPAAMAYALSNRETKLEIDGFSQSVTERFGERTLLNNAAR 1037
Cdd:PRK13826 961 RKHEAEERALRQRVSIDIPALSPAARQVLERVRDAIDRNDLPAALEYALADRMVKAEIDGFNKAVTERFGERTFLPNAAR 1040
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1046558184 1038 EPSGTLYEKLSEGMTPEQKQQLKQAWPVMRTAQQLAAHERTAQSLRQAEEQRLTQRQAPVLK 1099
Cdd:PRK13826 1041 EPSGKTFEKVTAGMTPGQKEELKSAWPVMRTAQQLAAHERTTEALKQAETLRQTQSQGLSLK 1102
|
|
| TraA_Ti |
TIGR02768 |
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a ... |
1-781 |
0e+00 |
|
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Pssm-ID: 274289 [Multi-domain] Cd Length: 744 Bit Score: 1080.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 1 MAIAHFSASIISRGDGRSVVLSAAYRHCAKMEYEREARTIDYTRKQGLLHEEFMLPADAPKwakaLIADRavsgavEAFW 80
Cdd:TIGR02768 1 MAIYHLSASIISRSSGRSAVAAAAYRSAARLVDERIGRVFDFTRKDGVAHSEIVLPDGAPD----SFLER------AALW 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 81 NKVEAFEKRSDAQLARDLTIALPLELTPEQNIALVRDFVEKHIRAKGMVADWVYH-DNPGNPHIHLMTTLRPLTEDGFGS 159
Cdd:TIGR02768 71 NAVEAAEKRKDAQLAREFEIALPRELNLEQNIELARRFVRDHFVEKGMVADWAIHdDGDGNPHAHLLTTTRPLEENGFGA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 160 KKVAVTAKDGQPvrtksgkilYELWAGSTDDFNVLRDGWFERLNHHLALAEIDLRIDGRSYEKQGIELEPTIHLGVGAKA 239
Cdd:TIGR02768 151 KKVRVLGEDGQP---------YEFWAGSKEDLDYWREQWAELANEHLAEAGLDLRIDHRSYAEQGIDLIPTKHIGVHAKA 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 240 IERKAQdqgvrpELERIELNEERRSENTRRILNNPAIVLDLITREKSVFDERDIAKVLHRYIDDPAVFQQLMVRIILNPE 319
Cdd:TIGR02768 222 MERRGE------AAERLPENLAIRQENAERILDNPELVLDLLTTEQSVFTRRDIARLLHRYIDDPQQFQQLMARVLASPQ 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 320 VLRLQretiDFATAKKvPARYSTRAMIRLEATMAWQATWLSNREGRGVSHSALEATFKRHERLSDEQKAAIERIAGPARI 399
Cdd:TIGR02768 296 LVALG----DPGTGKE-PARFSTREMIRLEAQMARSAEALSQSQGHGVSPPIVDAAIDQHYRLSEEQYEAVRHVTGSGDI 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 400 AAVVGRAGAGKTTMMKAAREAWELAGYRVVGGALAGKAAEGLSSEAGIESRTLSSWELRWNRGRDVLDNKTVFVMDEAGM 479
Cdd:TIGR02768 371 AVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAGM 450
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 480 VASKQMAGFVDAVVRAGAKIVLVGDPEQLQPIEAGAAFRAIVDRIGYAELETIYRQREDWMRKASLDLARGNVEKALALY 559
Cdd:TIGR02768 451 VGSRQMARVLKEAEEAGAKVVLVGDPEQLQPIEAGAAFRAIAERIGYAELETIRRQREAWARQASLELARGDVEKALAAY 530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 560 NANAGIVGERLKAEAVERLIAHWN---HDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGEGHVFRTADGERRFDA 636
Cdd:TIGR02768 531 RDHGHITIHDTREEAIEQVVADWKqdlREANPAGSQIMLAHTRKDVRALNEAAREALIERGELGESILFQTARGERKFAA 610
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 637 GDQIVFLKNETSLGVKNGMIGHVVEAAPNRIVAVVgdrDHRRHVVVEQRFYRNLDHGYATTIHKSQGATVDRVKVLASLS 716
Cdd:TIGR02768 611 GDRIVFLENNRDLGVKNGMLGTVEEIEDGRLVVQL---DSGELVIIPQAEYDALDHGYATTIHKSQGVTVDRAFVLASKS 687
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1046558184 717 LDRHLTYVAMTRHREDLQLYYGRRSFAFNGGLAKVLSRKNAKETTLDYERGklyrealrFAENRG 781
Cdd:TIGR02768 688 MDRHLAYVAMTRHRESVQLYAGKEDFTDRGALVKTLSRSSTKDTTLDYPHD--------FAIRRG 744
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
275-764 |
1.07e-107 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 346.58 E-value: 1.07e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 275 AIVLDLITREKSVFDERDIAkvLHRYIDDPAVFQQLMVRIILNPEVLRLQRetidfatakkvpaRYSTRaMIRLEATMAw 354
Cdd:COG0507 32 AALLSRAAGEGHTFPLEDLA--AARLLGVAEDIEAALAALVESGPLVLDGR-------------RYLTR-LLEAEQRLA- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 355 qaTWLSNREGRGVSHSALEATFKRHE-----RLSDEQKAAIERIAGPARIAAVVGRAGAGKTTMMKAAREAWELAGYRVV 429
Cdd:COG0507 95 --RRLRRLARPALDEADVEAALAALEpragiTLSDEQREAVALALTTRRVSVLTGGAGTGKTTTLRALLAALEALGLRVA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 430 GGALAGKAAEGLSSEAGIESRTLSSW-ELRWNRGR------DVLDNKTVFVMDEAGMVASKQMAGFVDAVVRAGAKIVLV 502
Cdd:COG0507 173 LAAPTGKAAKRLSESTGIEARTIHRLlGLRPDSGRfrhnrdNPLTPADLLVVDEASMVDTRLMAALLEALPRAGARLILV 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 503 GDPEQLQPIEAGAAFRAIVDR--IGYAELETIYRQREDWMRKA-SLDLARGNVEKALALYNANAGIVGERLKAEAVERLI 579
Cdd:COG0507 253 GDPDQLPSVGAGAVLRDLIESgtVPVVELTEVYRQADDSRIIElAHAIREGDAPEALNARYADVVFVEAEDAEEAAEAIV 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 580 AHWNHDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGEGhvfRTADGERRFDAGDQIVFLKNETSLGVKNGMIGHV 659
Cdd:COG0507 333 ELYADRPAGGEDIQVLAPTNAGVDALNQAIREALNPAGELERE---LAEDGELELYVGDRVMFTRNDYDLGVFNGDIGTV 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 660 VEAAPNRIVAVVgDRDHRRHVVVEQRFYRNLDHGYATTIHKSQGATVDRVKVLA----SLSLDRHLTYVAMTRHREDLQL 735
Cdd:COG0507 410 LSIDEDEGRLTV-RFDGREIVTYDPSELDQLELAYAITVHKSQGSTFDRVILVLpsehSPLLSRELLYTALTRARELLTL 488
|
490 500
....*....|....*....|....*....
gi 1046558184 736 YYGRRSfafnggLAKVLSRKNAKETTLDY 764
Cdd:COG0507 489 VGDRDA------LARAVRRDTARATGLAE 511
|
|
| MobA_MobL |
pfam03389 |
MobA/MobL family; This family includes of the MobA protein from the E. coli plasmid RSF1010, ... |
17-243 |
3.51e-105 |
|
MobA/MobL family; This family includes of the MobA protein from the E. coli plasmid RSF1010, and the MobL protein from the Thiobacillus ferrooxidans plasmid PTF1. These sequences are mobilization proteins, which are essential for specific plasmid transfer.
Pssm-ID: 427275 [Multi-domain] Cd Length: 217 Bit Score: 328.49 E-value: 3.51e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 17 RSVVLSAAYRHCAKMEYEREARTIDYTRKQGLLHEEFMLPADAPKWAkaliADRavsgavEAFWNKVEAFEKRSDAQLAR 96
Cdd:pfam03389 1 RSAVAAAAYRSGEKLHDERTGRTHDYTRKKGVVHSEILLPENAPEWA----ADR------ETLWNAVEAFEKRKDAQLAR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 97 DLTIALPLELTPEQNIALVRDFVEKHIRAKGMVADWVYHD-NPGNPHIHLMTTLRPLTEDGFGSKKVAVTAKDGQPVRTK 175
Cdd:pfam03389 71 EFEVALPRELSPEQRIELAREFVQENFVSKGMVADWAIHDpHPGNPHAHIMLTTRPLDEDGFWGKKVRKEDENGEKIRFK 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1046558184 176 SGKILYELWAGsTDDFNVLRDGWFERLNHHLALAEIDLRIDGRSYEKQGIELEPTIHLGVGAKAIERK 243
Cdd:pfam03389 151 SGKIDTRDWND-KEQLKEWREAWADLANQHLALAGIDERIDHRSYAEQGIDLIPTIHEGPAARAMERK 217
|
|
| MobQ |
NF041496 |
MobQ family relaxase; |
1-223 |
1.11e-62 |
|
MobQ family relaxase;
Pssm-ID: 469384 [Multi-domain] Cd Length: 197 Bit Score: 211.32 E-value: 1.11e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 1 MAIAHFSASIISRGDGRSVVLSAAYRHCAKMEYEREARTIDYTRKQGLLHEEFMLPADAPKWAkaliADRavsgavEAFW 80
Cdd:NF041496 1 MAIYHLSVKIISRSAGRSAVAAAAYRSGEKLTDERTGETHDYTRKGGVEHTEILAPPNAPPWA----ADR------ETLW 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 81 NKVEAFEKRSDAQLARDLTIALPLELTPEQNIALVRDFVEKHIRAKGMVADWVYHD-----NPGNPHIHLMTTLRPLTED 155
Cdd:NF041496 71 NAVEAAEKRKNSQLAREFEVALPHELSAEQRIELVREFVQENFVDKGMIADVAIHDpdrdgDQRNPHAHILLTTRPITPE 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1046558184 156 GFGSKkvavtakdgqpVRTKSGKILYELWagstddfnvlRDGWFERLNHHLALAEIDLRIDGRSYEKQ 223
Cdd:NF041496 151 GFGAK-----------SRDWNDKENLEEW----------REAWAELCNRALERAGSPERIDHRSLERQ 197
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
385-533 |
1.90e-41 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 149.24 E-value: 1.90e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 385 EQKAAIERIAGpARIAAVVGRAGAGKTTMMKAAREAWELAGYRVVGGALAGKAAEGLSSEAGIESRTLSSWeLRWNRGRD 464
Cdd:cd17933 1 EQKAAVRLVLR-NRVSVLTGGAGTGKTTTLKALLAALEAEGKRVVLAAPTGKAAKRLSESTGIEASTIHRL-LGINPGGG 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1046558184 465 V-------LDNKTVFVMDEAGMVASKQMAGFVDAvVRAGAKIVLVGDPEQLQPIEAGAAFRAIV--DRIGYAELETIY 533
Cdd:cd17933 79 GfyyneenPLDADLLIVDEASMVDTRLMAALLSA-IPAGARLILVGDPDQLPSVGAGNVLRDLIasKGVPTVELTEVF 155
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13826 |
PRK13826 |
Dtr system oriT relaxase; Provisional |
1-1099 |
0e+00 |
|
Dtr system oriT relaxase; Provisional
Pssm-ID: 237524 [Multi-domain] Cd Length: 1102 Bit Score: 2140.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 1 MAIAHFSASIISRGDGRSVVLSAAYRHCAKMEYEREARTIDYTRKQGLLHEEFMLPADAPKWAKALIADRAVSGAVEAFW 80
Cdd:PRK13826 1 MAIPHFSVSIVSRGSGRSAVLSAAYRHCAKMEYEREARTIDYTRKQGLLHEEFVLPADAPEWVRSMIADRSVSGASEAFW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 81 NKVEAFEKRSDAQLARDLTIALPLELTPEQNIALVRDFVEKHIRAKGMVADWVYHDNPGNPHIHLMTTLRPLTEDGFGSK 160
Cdd:PRK13826 81 NKVEAFEKRSDAQLAKDVTIALPLELTAEQNIALVRDFVEKHILAKGMVADWVYHDAPGNPHVHLMTTLRPLTEDGFGAK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 161 KVAVTAKDGQPVRTKSGKILYELWAGSTDDFNVLRDGWFERLNHHLALAEIDLRIDGRSYEKQGIELEPTIHLGVGAKAI 240
Cdd:PRK13826 161 KVAVIGEDGQPVRTDAGKIVYELWAGSTDDFNALRDGWFACQNHHLALAGLDLRIDGRSYEKQGIELEPTIHLGVGAKAI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 241 ERKAQDQGVRPELERIELNEERRSENTRRILNNPAIVLDLITREKSVFDERDIAKVLHRYIDDPAVFQQLMVRIILNPEV 320
Cdd:PRK13826 241 ERKAEQQGVRPELERIELQEERRSENARRIQRRPEIVLDLITREKSVFDERDVAKVLHRYVDDPAVFQSLMARILQSPEV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 321 LRLQRETIDFATAKKVPARYSTRAMIRLEATMAWQATWLSNREGRGVSHSALEATFKRHERLSDEQKAAIERIAGPARIA 400
Cdd:PRK13826 321 LRLERERIDFATGIRVPARYTTRAMIRLEAEMARRAIWLSGRSSHGVREAVLAATFARHARLSDEQKTAIEHVAGPARIA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 401 AVVGRAGAGKTTMMKAAREAWELAGYRVVGGALAGKAAEGLSSEAGIESRTLSSWELRWNRGRDVLDNKTVFVMDEAGMV 480
Cdd:PRK13826 401 AVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGMV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 481 ASKQMAGFVDAVVRAGAKIVLVGDPEQLQPIEAGAAFRAIVDRIGYAELETIYRQREDWMRKASLDLARGNVEKALALYN 560
Cdd:PRK13826 481 ASRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQREQWMRDASLDLARGNVGKALDAYR 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 561 ANAGIVGERLKAEAVERLIAHWNHDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGEGHVFRTADGERRFDAGDQI 640
Cdd:PRK13826 561 ANGRVIGSRLKAEAVESLIADWNRDYDPTKTTLILAHLRRDVRMLNEMARAKLVERGIVGEGHAFRTADGERRFAAGDQI 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 641 VFLKNETSLGVKNGMIGHVVEAAPNRIVAVVGDRDHRRHVVVEQRFYRNLDHGYATTIHKSQGATVDRVKVLASLSLDRH 720
Cdd:PRK13826 641 VFLKNEGSLGVKNGMIGKVVEAAPNRIVAEIGEGEHRRQVTVEQRFYNNLDHGYATTIHKSQGATVDRVKVLASLSLDRH 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 721 LTYVAMTRHREDLQLYYGRRSFAFNGGLAKVLSRKNAKETTLDYERGKLYREALRFAENRGLHIMQVARTMLRDRLDWTL 800
Cdd:PRK13826 721 LTYVAMTRHREDLQLYYGRRSFAFNGGLIPVLSRRNAKETTLDYERGKLYRQALRFAENRGLHLVNVARTLARDRLDWTL 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 801 RQKTKVSDLVHRLRALGERLGSDQSPKTQTM---KEAAPMVAGIKTFSGSVADTIGDKLGADPTLKQQWEEVSARFRYVF 877
Cdd:PRK13826 801 RQKQKLADLGARLRAIGERLGLAQSPKTQTMqnsKEAAPMVAGITTFPKSVADTVEDKLAADPALKKQWEEVSTRFHLVY 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 878 ADPVTAFRAINFDTVLADKEMAKQVLQKLEAEPETIGPLKGKTGILAGKAEREARRIAEVNVPSLKRDLEQYLQMRETAT 957
Cdd:PRK13826 881 ADPETAFKAVNFDAMLKDKEVAKSTLQKLAAEPESFGALKGKTGILASKADRQDRERAEVNVPALKRDLERYLRMREEAE 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 958 MRHQADEQTLRQRVSIDIPALSPAARVVLERVRDAIDRNDLPAAMAYALSNRETKLEIDGFSQSVTERFGERTLLNNAAR 1037
Cdd:PRK13826 961 RKHEAEERALRQRVSIDIPALSPAARQVLERVRDAIDRNDLPAALEYALADRMVKAEIDGFNKAVTERFGERTFLPNAAR 1040
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1046558184 1038 EPSGTLYEKLSEGMTPEQKQQLKQAWPVMRTAQQLAAHERTAQSLRQAEEQRLTQRQAPVLK 1099
Cdd:PRK13826 1041 EPSGKTFEKVTAGMTPGQKEELKSAWPVMRTAQQLAAHERTTEALKQAETLRQTQSQGLSLK 1102
|
|
| TraA_Ti |
TIGR02768 |
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a ... |
1-781 |
0e+00 |
|
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Pssm-ID: 274289 [Multi-domain] Cd Length: 744 Bit Score: 1080.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 1 MAIAHFSASIISRGDGRSVVLSAAYRHCAKMEYEREARTIDYTRKQGLLHEEFMLPADAPKwakaLIADRavsgavEAFW 80
Cdd:TIGR02768 1 MAIYHLSASIISRSSGRSAVAAAAYRSAARLVDERIGRVFDFTRKDGVAHSEIVLPDGAPD----SFLER------AALW 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 81 NKVEAFEKRSDAQLARDLTIALPLELTPEQNIALVRDFVEKHIRAKGMVADWVYH-DNPGNPHIHLMTTLRPLTEDGFGS 159
Cdd:TIGR02768 71 NAVEAAEKRKDAQLAREFEIALPRELNLEQNIELARRFVRDHFVEKGMVADWAIHdDGDGNPHAHLLTTTRPLEENGFGA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 160 KKVAVTAKDGQPvrtksgkilYELWAGSTDDFNVLRDGWFERLNHHLALAEIDLRIDGRSYEKQGIELEPTIHLGVGAKA 239
Cdd:TIGR02768 151 KKVRVLGEDGQP---------YEFWAGSKEDLDYWREQWAELANEHLAEAGLDLRIDHRSYAEQGIDLIPTKHIGVHAKA 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 240 IERKAQdqgvrpELERIELNEERRSENTRRILNNPAIVLDLITREKSVFDERDIAKVLHRYIDDPAVFQQLMVRIILNPE 319
Cdd:TIGR02768 222 MERRGE------AAERLPENLAIRQENAERILDNPELVLDLLTTEQSVFTRRDIARLLHRYIDDPQQFQQLMARVLASPQ 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 320 VLRLQretiDFATAKKvPARYSTRAMIRLEATMAWQATWLSNREGRGVSHSALEATFKRHERLSDEQKAAIERIAGPARI 399
Cdd:TIGR02768 296 LVALG----DPGTGKE-PARFSTREMIRLEAQMARSAEALSQSQGHGVSPPIVDAAIDQHYRLSEEQYEAVRHVTGSGDI 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 400 AAVVGRAGAGKTTMMKAAREAWELAGYRVVGGALAGKAAEGLSSEAGIESRTLSSWELRWNRGRDVLDNKTVFVMDEAGM 479
Cdd:TIGR02768 371 AVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAGM 450
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 480 VASKQMAGFVDAVVRAGAKIVLVGDPEQLQPIEAGAAFRAIVDRIGYAELETIYRQREDWMRKASLDLARGNVEKALALY 559
Cdd:TIGR02768 451 VGSRQMARVLKEAEEAGAKVVLVGDPEQLQPIEAGAAFRAIAERIGYAELETIRRQREAWARQASLELARGDVEKALAAY 530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 560 NANAGIVGERLKAEAVERLIAHWN---HDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGEGHVFRTADGERRFDA 636
Cdd:TIGR02768 531 RDHGHITIHDTREEAIEQVVADWKqdlREANPAGSQIMLAHTRKDVRALNEAAREALIERGELGESILFQTARGERKFAA 610
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 637 GDQIVFLKNETSLGVKNGMIGHVVEAAPNRIVAVVgdrDHRRHVVVEQRFYRNLDHGYATTIHKSQGATVDRVKVLASLS 716
Cdd:TIGR02768 611 GDRIVFLENNRDLGVKNGMLGTVEEIEDGRLVVQL---DSGELVIIPQAEYDALDHGYATTIHKSQGVTVDRAFVLASKS 687
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1046558184 717 LDRHLTYVAMTRHREDLQLYYGRRSFAFNGGLAKVLSRKNAKETTLDYERGklyrealrFAENRG 781
Cdd:TIGR02768 688 MDRHLAYVAMTRHRESVQLYAGKEDFTDRGALVKTLSRSSTKDTTLDYPHD--------FAIRRG 744
|
|
| PRK13889 |
PRK13889 |
conjugal transfer relaxase TraA; Provisional |
1-782 |
0e+00 |
|
conjugal transfer relaxase TraA; Provisional
Pssm-ID: 237546 [Multi-domain] Cd Length: 988 Bit Score: 644.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 1 MAIAHFSASIISRGDGRSVVLSAAYRHCAKMEYEREARTIDYTRKQGLLHEEFMLPADAPK-WAkaliaDRavsgavEAF 79
Cdd:PRK13889 1 MAIYHLHVKVIGRKAGSSAVASAAYRSASRLRDERLDRSHDFSAKRGVVHSEVMLPEGAPEaWS-----DR------ERL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 80 WNKVEAFEKRSDAQLARDLTIALPLELTPEQNIALVRDFVEKHIRAKGMVADWVYH-----DNPGNPHIHLMTTLRPLTE 154
Cdd:PRK13889 70 WNDVEAFEKRKDAQLAREVEFAIPREMTQAQGIELARDFVQAEFVDRGMIADLNVHwdigeDGMAKPHAHVMLTMRAVDE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 155 DGFGSKkvavtakdgqpVRTKSGKILYELWagstddfnvlRDGWFERLNHHLALAEIDLRIDGRSYEKQGIELEPTIHLG 234
Cdd:PRK13889 150 NGFGAK-----------VRDWNRTELVERW----------RERWAELANERLAELDIDARIDHRSLEAQGIALEPQSQIG 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 235 VGAKAIERKAQDQgvrpelERIELNEERRSENTRRILNNPAIVLDLITREKSVFDERDIAKVLHRYIDDPAVFQQLMVRI 314
Cdd:PRK13889 209 AAAQRIEGEGIEA------DRAEMHREIARRNGERIIADPSIALDAITHQQSTFTRRDLAKFAHRHSDGIDQFNAVMGAM 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 315 ILNPEVLRLQRETidfatakKVPARYSTRAMIRLEATMAWQATWLSNREGRGVSHSALEATFKRHE----RLSDEQKAAI 390
Cdd:PRK13889 283 RAAPDLVELGKDG-------RGEDRFTTRAMIETEQRLHRAAELMAERERHAVSDADREAALARAEarglVLSGEQADAL 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 391 ERIAGPARIAAVVGRAGAGKTTMMKAAREAWELAGYRVVGGALAGKAAEGLSSEAGIESRTLSSWELRWNRGRDVLDNKT 470
Cdd:PRK13889 356 AHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRD 435
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 471 VFVMDEAGMVASKQMAGFVDAVVRAGAKIVLVGDPEQLQPIEAGAAFRAIVDRIGYAELETIYRQREDWMRKASLDLARG 550
Cdd:PRK13889 436 VLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEAGAAFRSIHERHGGAEIGEVRRQREDWQRDATRDLATG 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 551 NVEKALALYNANAGIVGERLKAEAVERLIAHWNHD--YDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGEGHVFRTA 628
Cdd:PRK13889 516 RTGEALDAYEAHGMVHAAATREQARADLIDRWDRDrqAAPDRSRIILTHTNDEVRALNEAARERMRAAGDLGDDVRVTVE 595
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 629 DGERRFDAGDQIVFLKNETSLGVKNGMIGHVVEAAPNRIVAVVgdrDHRRHVVVEQRFYRNLDHGYATTIHKSQGATVDR 708
Cdd:PRK13889 596 RGERSFASGDRVMFLQNERGLGVKNGTLGTIEQVSAQSMSVRL---DDGRSVAFDLKDYDRIDHGYAATIHKAQGMTVDR 672
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1046558184 709 VKVLASLSLDRHLTYVAMTRHREDLQLYYGRRSFAFNGGLAKVLSRKNAKETTLDYERgklYREALRFAENRGL 782
Cdd:PRK13889 673 THVLATPGMDAHSSYVALSRHRDGVDLHYGRDDFADRDRLVRTLSRDRAKDMASDYER---ADPAQSYAERRGI 743
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
275-764 |
1.07e-107 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 346.58 E-value: 1.07e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 275 AIVLDLITREKSVFDERDIAkvLHRYIDDPAVFQQLMVRIILNPEVLRLQRetidfatakkvpaRYSTRaMIRLEATMAw 354
Cdd:COG0507 32 AALLSRAAGEGHTFPLEDLA--AARLLGVAEDIEAALAALVESGPLVLDGR-------------RYLTR-LLEAEQRLA- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 355 qaTWLSNREGRGVSHSALEATFKRHE-----RLSDEQKAAIERIAGPARIAAVVGRAGAGKTTMMKAAREAWELAGYRVV 429
Cdd:COG0507 95 --RRLRRLARPALDEADVEAALAALEpragiTLSDEQREAVALALTTRRVSVLTGGAGTGKTTTLRALLAALEALGLRVA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 430 GGALAGKAAEGLSSEAGIESRTLSSW-ELRWNRGR------DVLDNKTVFVMDEAGMVASKQMAGFVDAVVRAGAKIVLV 502
Cdd:COG0507 173 LAAPTGKAAKRLSESTGIEARTIHRLlGLRPDSGRfrhnrdNPLTPADLLVVDEASMVDTRLMAALLEALPRAGARLILV 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 503 GDPEQLQPIEAGAAFRAIVDR--IGYAELETIYRQREDWMRKA-SLDLARGNVEKALALYNANAGIVGERLKAEAVERLI 579
Cdd:COG0507 253 GDPDQLPSVGAGAVLRDLIESgtVPVVELTEVYRQADDSRIIElAHAIREGDAPEALNARYADVVFVEAEDAEEAAEAIV 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 580 AHWNHDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGEGhvfRTADGERRFDAGDQIVFLKNETSLGVKNGMIGHV 659
Cdd:COG0507 333 ELYADRPAGGEDIQVLAPTNAGVDALNQAIREALNPAGELERE---LAEDGELELYVGDRVMFTRNDYDLGVFNGDIGTV 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 660 VEAAPNRIVAVVgDRDHRRHVVVEQRFYRNLDHGYATTIHKSQGATVDRVKVLA----SLSLDRHLTYVAMTRHREDLQL 735
Cdd:COG0507 410 LSIDEDEGRLTV-RFDGREIVTYDPSELDQLELAYAITVHKSQGSTFDRVILVLpsehSPLLSRELLYTALTRARELLTL 488
|
490 500
....*....|....*....|....*....
gi 1046558184 736 YYGRRSfafnggLAKVLSRKNAKETTLDY 764
Cdd:COG0507 489 VGDRDA------LARAVRRDTARATGLAE 511
|
|
| MobA_MobL |
pfam03389 |
MobA/MobL family; This family includes of the MobA protein from the E. coli plasmid RSF1010, ... |
17-243 |
3.51e-105 |
|
MobA/MobL family; This family includes of the MobA protein from the E. coli plasmid RSF1010, and the MobL protein from the Thiobacillus ferrooxidans plasmid PTF1. These sequences are mobilization proteins, which are essential for specific plasmid transfer.
Pssm-ID: 427275 [Multi-domain] Cd Length: 217 Bit Score: 328.49 E-value: 3.51e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 17 RSVVLSAAYRHCAKMEYEREARTIDYTRKQGLLHEEFMLPADAPKWAkaliADRavsgavEAFWNKVEAFEKRSDAQLAR 96
Cdd:pfam03389 1 RSAVAAAAYRSGEKLHDERTGRTHDYTRKKGVVHSEILLPENAPEWA----ADR------ETLWNAVEAFEKRKDAQLAR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 97 DLTIALPLELTPEQNIALVRDFVEKHIRAKGMVADWVYHD-NPGNPHIHLMTTLRPLTEDGFGSKKVAVTAKDGQPVRTK 175
Cdd:pfam03389 71 EFEVALPRELSPEQRIELAREFVQENFVSKGMVADWAIHDpHPGNPHAHIMLTTRPLDEDGFWGKKVRKEDENGEKIRFK 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1046558184 176 SGKILYELWAGsTDDFNVLRDGWFERLNHHLALAEIDLRIDGRSYEKQGIELEPTIHLGVGAKAIERK 243
Cdd:pfam03389 151 SGKIDTRDWND-KEQLKEWREAWADLANQHLALAGIDERIDHRSYAEQGIDLIPTIHEGPAARAMERK 217
|
|
| AAA_30 |
pfam13604 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
381-565 |
8.41e-65 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.
Pssm-ID: 433343 [Multi-domain] Cd Length: 191 Bit Score: 217.05 E-value: 8.41e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 381 RLSDEQKAAIERIAG-PARIAAVVGRAGAGKTTMMKAAREAWELAGYRVVGGALAGKAAEGLSSEAGIESRTLSSWeLRW 459
Cdd:pfam13604 1 TLNAEQAAAVRALLTsGDRVAVLVGPAGTGKTTALKALREAWEAAGYRVIGLAPTGRAAKVLGEELGIPADTIAKL-LHR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 460 NRGRDVLDNKTVFVMDEAGMVASKQMAGFVDAVVRAGAKIVLVGDPEQLQPIEAGAAFRAIVD-RIGYAELETIYRQRED 538
Cdd:pfam13604 80 LGGRAGLDPGTLLIVDEAGMVGTRQMARLLKLAEDAGARVILVGDPRQLPSVEAGGAFRDLLAaGIGTAELTEIVRQRDP 159
|
170 180
....*....|....*....|....*..
gi 1046558184 539 WMRKASLDLARGNVEKALALYNANAGI 565
Cdd:pfam13604 160 WQRAASLALRDGDPAEALDALADRGRI 186
|
|
| MobQ |
NF041496 |
MobQ family relaxase; |
1-223 |
1.11e-62 |
|
MobQ family relaxase;
Pssm-ID: 469384 [Multi-domain] Cd Length: 197 Bit Score: 211.32 E-value: 1.11e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 1 MAIAHFSASIISRGDGRSVVLSAAYRHCAKMEYEREARTIDYTRKQGLLHEEFMLPADAPKWAkaliADRavsgavEAFW 80
Cdd:NF041496 1 MAIYHLSVKIISRSAGRSAVAAAAYRSGEKLTDERTGETHDYTRKGGVEHTEILAPPNAPPWA----ADR------ETLW 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 81 NKVEAFEKRSDAQLARDLTIALPLELTPEQNIALVRDFVEKHIRAKGMVADWVYHD-----NPGNPHIHLMTTLRPLTED 155
Cdd:NF041496 71 NAVEAAEKRKNSQLAREFEVALPHELSAEQRIELVREFVQENFVDKGMIADVAIHDpdrdgDQRNPHAHILLTTRPITPE 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1046558184 156 GFGSKkvavtakdgqpVRTKSGKILYELWagstddfnvlRDGWFERLNHHLALAEIDLRIDGRSYEKQ 223
Cdd:NF041496 151 GFGAK-----------SRDWNDKENLEEW----------REAWAELCNRALERAGSPERIDHRSLERQ 197
|
|
| Bep_C_terminal |
pfam17841 |
BID domain of Bartonella effector protein (Bep); This entry is the BID (Bep intracellular ... |
855-951 |
4.30e-42 |
|
BID domain of Bartonella effector protein (Bep); This entry is the BID (Bep intracellular delivery) domain located at the C-terminal of Bartonella effector proteins (Beps). It functions as a secretion signal in a subfamily of protein substrates of bacterial type IV secretion (T4S) systems. It mediates transfer of (1) relaxases and the attached DNA during bacterial conjugation, and (2) numerous Beps during protein transfer into host cells infected by pathogenic Bartonella species. Crystal structure of several representative BID domains show a conserved fold characterized by a compact, antiparallel four-helix bundle topped with a hook.
Pssm-ID: 436086 [Multi-domain] Cd Length: 97 Bit Score: 148.68 E-value: 4.30e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 855 KLGADPTLKQQWEEVSARFRYVFADPVTAFRAINFDTVLADKEMAKQVLQKLEAEPETIGPLKGKTGILAGKAEREARRI 934
Cdd:pfam17841 1 KLAADPALKKQWEEVSTRFRLVYADPEAAFAAMNFDAVLRDPAMAERTLRRLAAEPESFGALKGKTGILASRAERRERRT 80
|
90
....*....|....*..
gi 1046558184 935 AEVNVPSLKRDLEQYLQ 951
Cdd:pfam17841 81 AEVNVPALARDIERYLR 97
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
385-533 |
1.90e-41 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 149.24 E-value: 1.90e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 385 EQKAAIERIAGpARIAAVVGRAGAGKTTMMKAAREAWELAGYRVVGGALAGKAAEGLSSEAGIESRTLSSWeLRWNRGRD 464
Cdd:cd17933 1 EQKAAVRLVLR-NRVSVLTGGAGTGKTTTLKALLAALEAEGKRVVLAAPTGKAAKRLSESTGIEASTIHRL-LGINPGGG 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1046558184 465 V-------LDNKTVFVMDEAGMVASKQMAGFVDAvVRAGAKIVLVGDPEQLQPIEAGAAFRAIV--DRIGYAELETIY 533
Cdd:cd17933 79 GfyyneenPLDADLLIVDEASMVDTRLMAALLSA-IPAGARLILVGDPDQLPSVGAGNVLRDLIasKGVPTVELTEVF 155
|
|
| TraI_TIGR |
TIGR02760 |
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome ... |
339-764 |
7.88e-24 |
|
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Pssm-ID: 274285 [Multi-domain] Cd Length: 1960 Bit Score: 109.22 E-value: 7.88e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 339 RYSTRAMIRLEATMAWQATWLSNR----EGRGVSHSALEAtfkrHERLSDEQKAAIERIAGPA-RIAAVVGRAGAGKTTM 413
Cdd:TIGR02760 977 RWTTRAALRTETSILLHILPGKETvtplATRAQVFLNLEL----LERLTHGQKQAIHLIISTKdRFVAVQGLAGVGKTTM 1052
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 414 MKAAREAWELAG----YRVVGGALAGKAAEGLSSeAGIESRTLSSW--ELRWNRGRDVLDNKTVFVMDEAGMVASKQMAG 487
Cdd:TIGR02760 1053 LESRYKPVLQAFeseqLQVIGLAPTHEAVGELKS-AGVQAQTLDSFltDISLYRNSGGDFRNTLFILDESSMVSNFQLTH 1131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 488 FVDAVVRAGAKIVLVGDPEQLQPIEAGAAFRAIVDR--IGYAELETIYRQRED-WMRKASLDLARGNVEKALA-LYNANA 563
Cdd:TIGR02760 1132 ATELVQKSGSRAVSLGDIAQLQSLAAGKPFELAITFdiIDTAIMKEIVRQNNSaELKAAHNSLDKRSNPKALElLKNQNP 1211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 564 GIVGERLKAEAVER-----------LIAHWNHDYDQTKT--------------------------TLILAHLRRDVRMLN 606
Cdd:TIGR02760 1212 LQHELMQNAAMPEIasdeqglqkhdLAKLAVNTEKPKKAqpdatvtlyreivkdylsrtpefrenTLIIAHTNNDRTGIY 1291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 607 VMAREKLVERGIVGE--------------------------GHVFRTADG------------------------------ 630
Cdd:TIGR02760 1292 PFIREGLIKQKELSKqqvtvprlrsvnisspelktmmpfekGAVLRLKKDayltiadidrehgkltvadiktgserdilp 1371
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 631 --------------ERRFDAGDQIVFLKNETSLGVKNGMIGHVVEAAPNRIVAVVGDRdHRRHVVVEQRFYRNLDHGYAT 696
Cdd:TIGR02760 1372 rqldhtftslysdsELPLAKGDKIRLRATDKNRGIKANEVYTVTQVVNGLSVQLSKVK-NSLSLKPIQAKDKHWDYAYTR 1450
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1046558184 697 TIHKSQGATVDRVKVL--ASLSLDRH-LTYVAMTRHREDLQLYYGRRSFAFNGGLAKVLSRKNAKETTLDY 764
Cdd:TIGR02760 1451 TADSAQGATYTFVIALikGRLALTNYrSAYIDLTRASHHVELYTDNKEGTVKSWKQREANKTSAVETEEDY 1521
|
|
| PRK13709 |
PRK13709 |
conjugal transfer nickase/helicase TraI; Provisional |
380-763 |
1.97e-22 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237478 [Multi-domain] Cd Length: 1747 Bit Score: 104.88 E-value: 1.97e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 380 ERLSDEQKAAIERIAG-PARIAAVVGRAGAGKTTMMKAAREAWEL----AGYRVVGGALAGKAAEGLSSeAGIESRTLSS 454
Cdd:PRK13709 966 EGLTSGQRAATRMILEsTDRFTVVQGYAGVGKTTQFRAVMSAVNTlpesERPRVVGLGPTHRAVGEMRS-AGVDAQTLAS 1044
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 455 ----WELRWNRGRDVLDNKTVFVMDEAGMVASKQMAGFVDAVVRAGAKIVLVGDPEQLQPIEAGAAFRAIVDR--IGYAE 528
Cdd:PRK13709 1045 flhdTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTDQLQAIAPGQPFRLMQTRsaADVAI 1124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 529 LETIYRQReDWMRKASLDLARGNVEKALA-LYNANAGIVGERLKAEAVERLIAHWNH----------------------- 584
Cdd:PRK13709 1125 MKEIVRQT-PELREAVYSLINRDVERALSgIESVKPSQVPRQEGAWAPESSVTEFSHpqeaklaeaqqkamlafpdvpmt 1203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 585 -------DY-----DQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGEGHV-------FRTADGERR------------ 633
Cdd:PRK13709 1204 lyeaivrDYtgrtpEAREQTLIITHLNEDRRVLNSMIHDAREKAGELGKEQVtvpvldtANIRDGELRrlstweahrgal 1283
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 634 ------------FDAGDQIVFLKNEtslgvkNGMIGHV--VEAA--------PNRIVAVVGDR------DHRRHVVVEQR 685
Cdd:PRK13709 1284 alvdnvyhriagIDKDDGLITLRDA------EGNTRLIspREAVaegvtlytPDTIRVGTGDRmrftksDRERGYVANSV 1357
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 686 FY----------------------------RNLDHGYATTIHKSQGATVDRVKVLASLSLDRHL------TYVAMTRHRE 731
Cdd:PRK13709 1358 WTvtavsgdsvtlsdgqqtrvirpgqeraeQHIDLAYAITAHGAQGASETYAIALEGTEGGRKQmagfesAYVALSRMKQ 1437
|
490 500 510
....*....|....*....|....*....|..
gi 1046558184 732 DLQLYYGRRSfafngGLAKVLSRKNAKETTLD 763
Cdd:PRK13709 1438 HVQVYTDNRQ-----GWTDAINNAVQKGTAHD 1464
|
|
| recD |
TIGR01447 |
exodeoxyribonuclease V, alpha subunit; This family describes the exodeoxyribonuclease V alpha ... |
385-736 |
2.38e-16 |
|
exodeoxyribonuclease V, alpha subunit; This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273631 [Multi-domain] Cd Length: 582 Bit Score: 83.66 E-value: 2.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 385 EQKAAIERIAGPARIAAVVGRAGAGKTT----MMKAAREAWELAGY-RVVGGALAGKAAEGLSSEAG------------- 446
Cdd:TIGR01447 147 NWRKTAVALALKSNFSLITGGPGTGKTTtvarLLLALVKQSPKQGKlRIALAAPTGKAAARLAESLRkavknlaaaeali 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 447 ----IESRTL--------SSWELRWNRGR----DVLdnktvfVMDEAGMVASKQMAGFVDAVvRAGAKIVLVGDPEQLQP 510
Cdd:TIGR01447 227 aalpSEAVTIhrllgikpDTKRFRHHERNplplDVL------VVDEASMVDLPLMAKLLKAL-PPNTKLILLGDKNQLPS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 511 IEAGAAFRAIVDRIGYAE------------------------LETIYRQREDwmrKASLDLAR----GNVEKALALYNA- 561
Cdd:TIGR01447 300 VEAGAVLGDLCELASIGKsilyalckkinsktrnplsdnvcfLKTSHRFGKD---SGIGQLAKainsGDIEAVLNNLRSg 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 562 -NAGIVGERLKAEAVERL----IAH---WNHDYDQTKTTLILAHLRR------------DVRMLNVMAREKLVERGIVGE 621
Cdd:TIGR01447 377 qLIEFEFLNSKEDAIERLknlyVKYrtfLQKLAALSDAKEILETFDRlrlltalrdgpfGVLGLNRRIEQELQEKYFDPD 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 622 GHVFRtadgerrfdAGDQIVFLKNETSLGVKNGMIGhVVEAAPNRIVAVVGDR-DHRRHVVVEQrfYRNLDHGYATTIHK 700
Cdd:TIGR01447 457 EEGWY---------IGRPIMVTENDYTLGLFNGDIG-VLLRDPDGILTVWFHFaDGSKAVLPSR--LPNYETAFAMTVHK 524
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1046558184 701 SQGATVDRVKVL----ASLSLDRHLTYVAMTRHREDLQLY 736
Cdd:TIGR01447 525 SQGSEFDHVILIlpngNSPVLTRELLYTGITRAKDQLSVW 564
|
|
| PRK14712 |
PRK14712 |
conjugal transfer nickase/helicase TraI; Provisional |
380-793 |
5.36e-14 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237796 [Multi-domain] Cd Length: 1623 Bit Score: 77.21 E-value: 5.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 380 ERLSDEQKAAIERIAGPA-RIAAVVGRAGAGKTTMMKAAREAW----ELAGYRVVGGALAGKAAEGLSSeAGIESRTLSS 454
Cdd:PRK14712 834 EKLTSGQRAATRMILETSdRFTVVQGYAGVGKTTQFRAVMSAVnmlpESERPRVVGLGPTHRAVGEMRS-AGVDAQTLAS 912
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 455 W----ELRWNRGRDVLDNKTVFVMDEAGMVASKQMAGFVDAVVRAGAKIVLVGDPEQLQPIEAGAAFRAIVDRIG--YAE 528
Cdd:PRK14712 913 FlhdtQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAadVVI 992
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 529 LETIYRQREDwMRKASLDLARGNVEKALalynanAGIvgERLKAEAVERLIAHWNHDYDQT------------------- 589
Cdd:PRK14712 993 MKEIVRQTPE-LREAVYSLINRDVERAL------SGL--ERVKPSQVPRLEGAWAPEHSVTefshsqeaklaeaqqkaml 1063
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 590 ----------------------------KTTLILAHLRRDVRMLNVM---AREKLVERGIVG------------EGHVFR 626
Cdd:PRK14712 1064 kgeafpdvpmtlyeaivrdytgrtpearEQTLIVTHLNEDRRVLNSMihdAREKAGELGQVQvmvpvlntanirDGELRR 1143
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 627 TADGERRFDA----------------GDQIVFLK----NETSLGVKNGMIGHVVEAAPNRIVAVVGDR------DHRRHV 680
Cdd:PRK14712 1144 LSTWENNPDAlalvdnvyhriagiskDDGLITLQdaegNTRLISPREAVAEGVTLYTPDTIRVGTGDRirftksDRERGY 1223
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 681 VV----------------------------EQRFYRNLDHGYATTIHKSQGATVDRVKVLASLSLDRHL------TYVAM 726
Cdd:PRK14712 1224 VAnsvwtvtavsgdsvtlsdgqqtrvirpgQERAEQHIDLAYAITAHGAQGASETFAIALEGTEGNRKLmagfesAYVAL 1303
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1046558184 727 TRHREDLQLYYGRRSfafngGLAKVLSRKNAKETTLDYERGKLYREALR----FAENRGLHIMQVARTMLR 793
Cdd:PRK14712 1304 SRMKQHVQVYTDNRQ-----GWTDAINNAVQKGTAHDVFEPKPDREVMNaerlFSTARELRDVAAGRAVLR 1369
|
|
| SF1_C_RecD |
cd18809 |
C-terminal helicase domain of RecD family helicases; RecD is a member of the RecBCD (EC 3.1.11. ... |
692-736 |
6.68e-14 |
|
C-terminal helicase domain of RecD family helicases; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD family helicases are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350196 [Multi-domain] Cd Length: 80 Bit Score: 67.97 E-value: 6.68e-14
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1046558184 692 HGYATTIHKSQGATVDRVKVL---ASLSLDRHLTYVAMTRHREDLQLY 736
Cdd:cd18809 32 QAYAMTIHKSQGSEFDRVIVVlptSHPMLSRGLLYTALTRARKLLTLV 79
|
|
| TraI_TIGR |
TIGR02760 |
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome ... |
398-620 |
7.66e-10 |
|
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Pssm-ID: 274285 [Multi-domain] Cd Length: 1960 Bit Score: 63.38 E-value: 7.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 398 RIAAVVGRAGAGKTTMMKAAREAWELAGYRVVGGALAGKAAEGLSSEAGIESRTLSSWELRWNRGRDV------------ 465
Cdd:TIGR02760 447 RFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKIPRLASTFITWVKNLFNDDQDhtvqglldkssp 526
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 466 LDNKTVFVMDEAGMVASKQMAGFVDAVVRAGAKIVLVGDPEQLQPIEAGAAFRAIVDRiGYAELETIYRQREDwmrkasl 545
Cdd:TIGR02760 527 FSNKDIFVVDEANKLSNNELLKLIDKAEQHNSKLILLNDSAQRQGMSAGSAIDLLKEG-GVTTYAWVDTKQQK------- 598
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1046558184 546 dlargnveKALALYNANagivgerlKAEAVERLIAHWNHDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVG 620
Cdd:TIGR02760 599 --------ASVEISEAV--------DKLRVDYIASAWLDLTPDRQNSQVLATTHREQQDLTQIIRNALKQEGQLS 657
|
|
| SF1_C |
cd18786 |
C-terminal helicase domain of superfamily 1 DEAD/H-box helicases; Superfamily (SF)1 family ... |
659-736 |
4.70e-07 |
|
C-terminal helicase domain of superfamily 1 DEAD/H-box helicases; Superfamily (SF)1 family members include UvrD/Rep, Pif1-like, and Upf-1-like proteins. Similar to SF2 helicases, they do not form toroidal, predominantly hexameric structures like SF3-6. SF1 helicases are a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Their helicase core is surrounded by C- and N-terminal domains with specific functions such as nucleases, RNA or DNA binding domains, or domains engaged in protein-protein interactions. The core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350173 [Multi-domain] Cd Length: 89 Bit Score: 48.59 E-value: 4.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 659 VVEAAPNRIVAVVGDRDHRRHVVVEQRFYRN------LDHGYATTIHKSQGATVDRVKVLAS--LSLDRHLTYVAMTRHR 730
Cdd:cd18786 3 IVNAANGLYKGVVLTPYHRDRAYLNQYLQGLsldefdLQLVGAITIDSSQGLTFDVVTLYLPtaNSLTPRRLYVALTRAR 82
|
....*.
gi 1046558184 731 EDLQLY 736
Cdd:cd18786 83 KRLVIY 88
|
|
| recD |
PRK10875 |
exodeoxyribonuclease V subunit alpha; |
369-736 |
3.03e-05 |
|
exodeoxyribonuclease V subunit alpha;
Pssm-ID: 236783 [Multi-domain] Cd Length: 615 Bit Score: 48.01 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 369 HSALEATFKRHERLSDEQKAAIErIAGPARIAAVVGRAGAGKTT-----------MMKAAREAWELAgyrvvggALAGKA 437
Cdd:PRK10875 140 RQTLDALFGPVTDEVDWQKVAAA-VALTRRISVISGGPGTGKTTtvakllaaliqLADGERCRIRLA-------APTGKA 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 438 AEGLSSEAGIESRTLS-------------------------SWELRWNRGRDV-LDnktVFVMDEAGMVASKQMAGFVDA 491
Cdd:PRK10875 212 AARLTESLGKALRQLPltdeqkkripeeastlhrllgaqpgSQRLRYHAGNPLhLD---VLVVDEASMVDLPMMARLIDA 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 492 VvRAGAKIVLVGDPEQLQPIEAGAAFRAIVDrigYAELETIYRQREDWMRKASLDLARGNVEKALAL------------Y 559
Cdd:PRK10875 289 L-PPHARVIFLGDRDQLASVEAGAVLGDICR---FAEAGYSAERAQQLSRLTGCHLPAGTGTEAASVrdslcllrksyrF 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 560 NANAGI--------VGERLKAEAVerliahWNHDY-DQTKTTL------------ILAHLRRDVRMLNVMAREKLV---- 614
Cdd:PRK10875 365 GSDSGIgqlaaavnRGDKRAAKAV------FQQGFsDIEKRPLqsgedyqamleeALAGYGRYLDLLAARAEPEAIlaaf 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 615 -----------------------ERGIVGEGHVFRTADGERRFDAGDQIVFLKNETSLGVKNGMIG----------HVVE 661
Cdd:PRK10875 439 nryqllcalregpfgvaglneriEQALQQKRLIRRPSGPHSRWYEGRPVMIARNDSALGLFNGDIGialdrgqgelRVWF 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 662 AAPN-RIVAVVGDR--DHrrhvvveqrfyrnlDHGYATTIHKSQGATVDR-VKVLASLS---LDRHLTYVAMTRHREDLQ 734
Cdd:PRK10875 519 QLPDgNIKSVQPSRlpEH--------------ETAWAMTVHKSQGSEFDHtALVLPNQFtpvVTRELVYTAITRARRRLS 584
|
..
gi 1046558184 735 LY 736
Cdd:PRK10875 585 LY 586
|
|
| Viral_helicase1 |
pfam01443 |
Viral (Superfamily 1) RNA helicase; Helicase activity for this family has been demonstrated ... |
691-736 |
6.45e-04 |
|
Viral (Superfamily 1) RNA helicase; Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Pssm-ID: 366646 [Multi-domain] Cd Length: 227 Bit Score: 42.37 E-value: 6.45e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1046558184 691 DHGY-ATTIHKSQGATVDRVKV-------LASLSLDRHLTYVAMTRHREDLQLY 736
Cdd:pfam01443 173 SLGVrVTTVHEVQGLTFDSVTLvldtdtdLLIISDSPEHLYVALTRHRKSLHIL 226
|
|
| DEXXQc_Upf1-like |
cd17934 |
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, ... |
457-546 |
7.28e-04 |
|
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), coronavirus Nsp13, and similar proteins. They belong to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438708 [Multi-domain] Cd Length: 121 Bit Score: 40.68 E-value: 7.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 457 LRWNRGRDVL---------DNKTVFVMDEAGMVASKQMAGfvdAVVRAGaKIVLVGDPEQLQPIEAGAAFRAIVDRIGYA 527
Cdd:cd17934 24 LKGLRGKRVLvtaqsnvavDNVDVVIIDEASQITEPELLI---ALIRAK-KVVLVGDPKQLPPVVQEDHAALLGLSFILS 99
|
90
....*....|....*....
gi 1046558184 528 ELETIYRQREDWmRKASLD 546
Cdd:cd17934 100 LLLLFRLLLPGS-PKVMLD 117
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
366-431 |
9.95e-04 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 41.38 E-value: 9.95e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1046558184 366 GVSHSALEATFKRHERLSDEQKAAIERIAG---PARIAAVVGRAGAGKTTMMKAareaweLAGYRVVGG 431
Cdd:cd03213 1 GVTLSFRNLTVTVKSSPSKSGKQLLKNVSGkakPGELTAIMGPSGAGKSTLLNA------LAGRRTGLG 63
|
|
| DNA2 |
COG1112 |
Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]; |
34-511 |
2.09e-03 |
|
Superfamily I DNA and/or RNA helicase [Replication, recombination and repair];
Pssm-ID: 440729 [Multi-domain] Cd Length: 819 Bit Score: 42.42 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 34 EREARTIDYTRKQGLLHEEFMLPADAPKWAKALIADRAVSGAVEAFWNKVEAFEKRSDAQLARDLTIALPLELTPEQNIA 113
Cdd:COG1112 95 AAELLLLLLLLLLLAALLLALAALLLALALLLLALALLALLALLLAELLDLLAALAALAALLAALLLLLLLLAALLLLDL 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 114 LVRDFVEKHIRAKGMVADWVYHDNPGNPHIHLMTTLRPLTEDGFGSKKVAVTAKDGQPVRTKSGKILYELWAGSTDDFNV 193
Cdd:COG1112 175 RLLALLELLLAAALALALLALLALALEDELALLLLLLLLALLLLLALLLLLDALLLLLAALALLALALLLALLLLLLALL 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 194 LRDGW---FERLNHHLALAEIDLRIDGRSYEKQGIELEPTIHLGVGAKAIERKAQDQGVRPELERIELNEERRSENTRRI 270
Cdd:COG1112 255 LLAALallRAALRLDLLAALELLAALSLALLALLAALALALLLLAALALLLALALAALLALLALLALLAARLAAALAALL 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 271 LNNPAIVLDLITREKSVFDERDIAKVLHRYIDDPAVFQQLMVRIILNPEVLRLQRETIDFATAKKVPARYSTRAMIRLEA 350
Cdd:COG1112 335 LLLLLEELALLAALLLLLELALLRLLAALLLALALLLLLALEELLLLALLRLLAEGLALLLLLLLAALLRLARALLLLAL 414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 351 TMAWQATWLSNREGRGVSHSALEATFKRHERLSDEQKAAIERIAGPARIAAVVGRAGAGKTTMMKAAREAWE--LAGYRV 428
Cdd:COG1112 415 LLAAAAAALAALLLLALALLAALLALLLLLAAALAALLALLLLLLLALAALLLLLAAAAALLALALLESLLEelIEEHPE 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046558184 429 VGGALAGKAAEGLSSEAGIESRTLSSWELRWNRGRDVLDNKTVFVM---------------------DEAGMVASKQMAG 487
Cdd:COG1112 495 ELEKLIAELREAARLRRALRRELKKRRELRKLLWDALLELAPVVGMtpasvarllplgegsfdlviiDEASQATLAEALG 574
|
490 500
....*....|....*....|....
gi 1046558184 488 fvdAVVRAGaKIVLVGDPEQLQPI 511
Cdd:COG1112 575 ---ALARAK-RVVLVGDPKQLPPV 594
|
|
| UvrD_C_2 |
pfam13538 |
UvrD-like helicase C-terminal domain; This domain is found at the C-terminus of a wide variety ... |
692-736 |
2.13e-03 |
|
UvrD-like helicase C-terminal domain; This domain is found at the C-terminus of a wide variety of helicase enzymes. This domain has a AAA-like structural fold.
Pssm-ID: 463913 [Multi-domain] Cd Length: 52 Bit Score: 37.17 E-value: 2.13e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1046558184 692 HGYATTIHKSQGATVDRVKVLASLS-------LDRHLTYVAMTRHREDLQLY 736
Cdd:pfam13538 1 LAYALTVHKAQGSEFPAVFLVDPDLtahyhsmLRRRLLYTAVTRARKKLVLV 52
|
|
| UvrD |
COG0210 |
Superfamily I DNA or RNA helicase [Replication, recombination and repair]; |
380-428 |
7.84e-03 |
|
Superfamily I DNA or RNA helicase [Replication, recombination and repair];
Pssm-ID: 439980 [Multi-domain] Cd Length: 721 Bit Score: 40.30 E-value: 7.84e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1046558184 380 ERLSDEQKAAIERIAGPARIAAVvgrAGAGKTTMMkAAREAWELAGYRV 428
Cdd:COG0210 5 AGLNPEQRAAVEHPEGPLLVLAG---AGSGKTRVL-THRIAYLIAEGGV 49
|
|
| |
