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Conserved domains on  [gi|1042245865|ref|WP_065282725|]
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MULTISPECIES: ABC transporter permease [Rhizobium]

Protein Classification

ABC transporter permease( domain architecture ID 11427312)

ABC transporter permease similar to ABC oligopeptide transporter permease proteins (OppB, AppB, and AmiC), the transmembrane subunits (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Gene Ontology:  GO:0055085
PubMed:  18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-304 1.15e-107

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 315.47  E-value: 1.15e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865   1 MKSFIGKRAIASGVSLVVLIVIVFFLSRLT-GDPTDLYLPIDATTEMRQQFREMNGFNDPLIIQFGRYVSDLAQGNFGQS 79
Cdd:COG0601     1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLpGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865  80 LRQARPAMDVVLEAFVWTFWLAVITMALVTVAAIVIGSLAAFRVGGVFDRLATFFSLIGAAAPDFWLAIVAIVIFAVKLH 159
Cdd:COG0601    81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 160 VLPTSGTGTFW--------HWVLPVSVLFIRPFGLILQVVRGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVI 231
Cdd:COG0601   161 WLPVSGRVSPWedfldalrHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVV 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1042245865 232 TVIGDQAAAILNGAVVVETVFGFPGIGKLMIDSILLRDFAVVLAVIMVSALAIFIMNLLIDIAYALLDPRIRY 304
Cdd:COG0601   241 TVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRL 313
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-304 1.15e-107

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 315.47  E-value: 1.15e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865   1 MKSFIGKRAIASGVSLVVLIVIVFFLSRLT-GDPTDLYLPIDATTEMRQQFREMNGFNDPLIIQFGRYVSDLAQGNFGQS 79
Cdd:COG0601     1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLpGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865  80 LRQARPAMDVVLEAFVWTFWLAVITMALVTVAAIVIGSLAAFRVGGVFDRLATFFSLIGAAAPDFWLAIVAIVIFAVKLH 159
Cdd:COG0601    81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 160 VLPTSGTGTFW--------HWVLPVSVLFIRPFGLILQVVRGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVI 231
Cdd:COG0601   161 WLPVSGRVSPWedfldalrHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVV 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1042245865 232 TVIGDQAAAILNGAVVVETVFGFPGIGKLMIDSILLRDFAVVLAVIMVSALAIFIMNLLIDIAYALLDPRIRY 304
Cdd:COG0601   241 TVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRL 313
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 25-304 9.02e-58

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 188.00  E-value: 9.02e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865  25 FLSRLTGDPTDLYLPIDATTEMRQQFREMNGFNDPLIIQFGRYVSDLAQGNFGQSLRQARPAMDVVLEAFVWTFWLAVIT 104
Cdd:PRK15081   26 FVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTSMVSRRPVSEEIASRFMPTLWLTITS 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 105 MALVTVAAIVIGSLAAFRVGGVFDRLATFFSLIGAAAPDFWLAIVAIVIFAVKLHVLPTSGTGTFWHWVLPVSVLFIRPF 184
Cdd:PRK15081  106 MVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELGWLPTVGADSWQHYILPSLTLGAAVA 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 185 GLILQVVRGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITVIGDQAAAILNGAVVVETVFGFPGIGKLMIDS 264
Cdd:PRK15081  186 AVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDS 265

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1042245865 265 ILLRDFAVVLAVIMVSALAIFIMNLLIDIAYALLDPRIRY 304
Cdd:PRK15081  266 VEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRY 305
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 112-304 4.34e-20

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 85.43  E-value: 4.34e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 112 AIVIGSLAAFRVGGVFDRLATFFSLIGAAAPDFWLAIVAIVIFavklhvlptsGTGTFWHWVLPVSVLFIRPFGLILQVV 191
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLI 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 192 RGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITVIGDQAAAILNGAVVVETVFGFPGIGKLMIDSILLRDFA 271
Cdd:pfam00528  71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1042245865 272 VVLAVIMVSALAIFIMNLLIDIAYALLDPRIRY 304
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 94-286 6.96e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 60.37  E-value: 6.96e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865  94 FVWTFWLAVITMALVTVAAIVIGSLAAFRvGGVFDRLATFFSLIGAAAPDFWLAIVAIVIFAVKLHvlptsgTGTFWHWV 173
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARK-RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG------WGILPGLG 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 174 LPVSVLFIRPFGLILQVVRGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITVIGDQAAAILNGAVVVETVFG 253
Cdd:cd06261    74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1042245865 254 F----PGIGKLMIDSILLRDFAVVLAVIMVSALAIFI 286
Cdd:cd06261   154 GeapgPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-304 1.15e-107

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 315.47  E-value: 1.15e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865   1 MKSFIGKRAIASGVSLVVLIVIVFFLSRLT-GDPTDLYLPIDATTEMRQQFREMNGFNDPLIIQFGRYVSDLAQGNFGQS 79
Cdd:COG0601     1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLpGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865  80 LRQARPAMDVVLEAFVWTFWLAVITMALVTVAAIVIGSLAAFRVGGVFDRLATFFSLIGAAAPDFWLAIVAIVIFAVKLH 159
Cdd:COG0601    81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 160 VLPTSGTGTFW--------HWVLPVSVLFIRPFGLILQVVRGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVI 231
Cdd:COG0601   161 WLPVSGRVSPWedfldalrHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVV 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1042245865 232 TVIGDQAAAILNGAVVVETVFGFPGIGKLMIDSILLRDFAVVLAVIMVSALAIFIMNLLIDIAYALLDPRIRY 304
Cdd:COG0601   241 TVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRL 313
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 25-304 9.02e-58

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 188.00  E-value: 9.02e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865  25 FLSRLTGDPTDLYLPIDATTEMRQQFREMNGFNDPLIIQFGRYVSDLAQGNFGQSLRQARPAMDVVLEAFVWTFWLAVIT 104
Cdd:PRK15081   26 FVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTSMVSRRPVSEEIASRFMPTLWLTITS 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 105 MALVTVAAIVIGSLAAFRVGGVFDRLATFFSLIGAAAPDFWLAIVAIVIFAVKLHVLPTSGTGTFWHWVLPVSVLFIRPF 184
Cdd:PRK15081  106 MVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELGWLPTVGADSWQHYILPSLTLGAAVA 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 185 GLILQVVRGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITVIGDQAAAILNGAVVVETVFGFPGIGKLMIDS 264
Cdd:PRK15081  186 AVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDS 265

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1042245865 265 ILLRDFAVVLAVIMVSALAIFIMNLLIDIAYALLDPRIRY 304
Cdd:PRK15081  266 VEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRY 305
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
43-304 3.07e-49

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 166.91  E-value: 3.07e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865  43 TTEMRQQFREMNGFNDPLIIQFGRYVSDLAQGNFGQSLRQARPAMDVVLEAFVWTFWLAVITMALVTVAAIVIGSLAAFR 122
Cdd:PRK10914   45 SPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVK 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 123 VGGVFDRLATFFSLIGAAAPDFWLAIVAIVIFAVKLHVLPTSG--------------TG------TFW-----------H 171
Cdd:PRK10914  125 RGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGrvsdmvflddsnplTGfmlidtAIWgedgnfidavaH 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 172 WVLPVSVLFIRPFGLILQVVRGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITVIGDQAAAILNGAVVVETV 251
Cdd:PRK10914  205 MILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETI 284

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1042245865 252 FGFPGIGKLMIDSILLRDFAVVLAVIMVSALAIFIMNLLIDIAYALLDPRIRY 304
Cdd:PRK10914  285 FSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRH 337
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-304 5.85e-48

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 162.54  E-value: 5.85e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865   1 MKSFIGKRAIASGVSLVVLIVIVFFLSRLT-GDP--TDLYLPIDATTEMRQQFremnGFNDPLIIQFGRYVSDLAQGNFG 77
Cdd:PRK09471    1 MLKFILRRCLEAIPTLFILITISFFMMRLApGSPftGERTLPPEVMANIEAKY----HLNDPIMTQYFSYLKQLAHGDFG 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865  78 QSLR-QARPAMDVVLEAFVWTFWLAVITMALVTVAAIVIGSLAAFRVGGVFDRLATFFSLIGAAAPDFWLAIVAIVIFAV 156
Cdd:PRK09471   77 PSFKyKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAI 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 157 KLHVLPTSG--TGTFWHWVLPVSVLFIRPFGLILQVVRGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITVI 234
Cdd:PRK09471  157 TLHWLPGGGwnGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYM 236

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1042245865 235 GDQAAAILNGAVVVETVFGFPGIGKLMIDSILLRDFAVVLAV-IMVSALAIfIMNLLIDIAYALLDPRIRY 304
Cdd:PRK09471  237 GPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLtILVGALTI-LFNAIVDVLYAVIDPKIRY 306
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 1-303 7.03e-48

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 162.56  E-value: 7.03e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865   1 MKSFIGKRAIASGVSLVVLIVIVFFLSRL-TGDPTDLYL---PIDATTEMRQQFREMNGFNDPLIIQFGRYVSDLAQGNF 76
Cdd:PRK10352    1 MLRYILRRLLLLIPMLLAASVIIFLMLRLgTGDPALDYLrlsNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865  77 GQSLRQARPAMDVVLEAFVWTFWLAVITMALVTVAAIVIGSLAAFRVGGVFDRLATFFSLIGAAAPDFWLAIVAIVIFAV 156
Cdd:PRK10352   81 GISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 157 KLHVLPTSGTGTFWHWVLPVSVLFIRPFGLILQVVRGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITVIGD 236
Cdd:PRK10352  161 YLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVGM 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1042245865 237 QAAAILNGAVVVETVFGFPGIGKLMIDSILLRDFAVVLAVIMVSALAIFIMNLLIDIAYALLDPRIR 303
Cdd:PRK10352  241 HIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIR 307
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 45-304 1.63e-29

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 114.90  E-value: 1.63e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865  45 EMRQQFremnGFNDPLIIQFGRYVSDLAQGNFGQSLRQARPAMDVVLEAFVWTFWLAVITMALVTVAAIVIGSLAAFRVG 124
Cdd:COG4174    85 ELEKQY----GFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAVRDG 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 125 GVFDRLATFFSLIGAAAPDFWLAIVAIVIFA--VKLHVLPTSG---------------TGTFWHWVLPVSVLFIRPFGLI 187
Cdd:COG4174   161 SRFDVWTSTVIIVGYAIPGFLFAILLIVLFAggSYFDWFPLRGltsdnwdqlswwgkiLDYLWHLTLPVTAMVIGGFATL 240

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 188 LQVVRGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITviGDQAA---AILNGAVVVETVFGFPGIGKLMIDS 264
Cdd:COG4174   241 TLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIA--GFPAAfigAFFTGSLLIETIFSLDGLGLLGFEA 318

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1042245865 265 ILLRDFAVVLAVIMVSALAIFIMNLLIDIAYALLDPRIRY 304
Cdd:COG4174   319 VVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRIDF 358
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 55-304 6.08e-27

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 108.30  E-value: 6.08e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865  55 GFNDPLIIQFGRYVSDLAQGNFGQSLRQARPAMDVVLEAFVWTFWLAVITMALVTVAAIVIGSLAAFRVGGVFDRLATFF 134
Cdd:PRK15133   94 GFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVRNGSRFDVWSSAF 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 135 SLIGAAAPDFWLAIVAIVIFA--VKLHVLPTSG---------------TGTFWHWVLPVSVLFIRPFGLILQVVRGSMIS 197
Cdd:PRK15133  174 IIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGlvsanfdslpwyqkiTDYLWHITLPVLATVIGGFAALTMLTKNSFLD 253

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 198 VLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITviGDQAAAI---LNGAVVVETVFGFPGIGKLMIDSILLRDFAVVL 274
Cdd:PRK15133  254 EIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIA--GFPATFIsmfFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMF 331

                         250       260       270
                  ....*....|....*....|....*....|
gi 1042245865 275 AVIMVSALAIFIMNLLIDIAYALLDPRIRY 304
Cdd:PRK15133  332 GTLYIFTLIGLLLNIVSDISYTLVDPRIDF 361
PRK15110 PRK15110
peptide ABC transporter permease SapB;
67-300 3.39e-25

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 102.46  E-value: 3.39e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865  67 YVSDLAQGNFGQSLRQARPAMDVVLEAFVWTFWLAVITMALVTVAAIVIGSLAAFRVGGVFDRLATFFSLIGAAAPDFWL 146
Cdd:PRK15110   47 WFNGLLHWDFGVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWL 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 147 AIVAIVIFAVKLHVLPTSG-----------TG--------------------TFWHWVLPVSVLFIRPFGLILQVVRGSM 195
Cdd:PRK15110  127 ALLLTLFFSLTLGWLPVSGrfdllyevkpvTGfalidawlsdspwrdemimsAIRHMILPVITLAVAPTTEVIRLMRIST 206

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 196 ISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITVIGDQAAAILNGAVVVETVFGFPGIGKLMIDSILLRDFAVVLA 275
Cdd:PRK15110  207 IEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISA 286

                         250       260
                  ....*....|....*....|....*
gi 1042245865 276 VIMVSALAIFIMNLLIDIAYALLDP 300
Cdd:PRK15110  287 GVMVVGSLVIIVNVLSDILGAMANP 311
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 112-304 4.34e-20

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 85.43  E-value: 4.34e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 112 AIVIGSLAAFRVGGVFDRLATFFSLIGAAAPDFWLAIVAIVIFavklhvlptsGTGTFWHWVLPVSVLFIRPFGLILQVV 191
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLI 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 192 RGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITVIGDQAAAILNGAVVVETVFGFPGIGKLMIDSILLRDFA 271
Cdd:pfam00528  71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1042245865 272 VVLAVIMVSALAIFIMNLLIDIAYALLDPRIRY 304
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 94-286 6.96e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 60.37  E-value: 6.96e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865  94 FVWTFWLAVITMALVTVAAIVIGSLAAFRvGGVFDRLATFFSLIGAAAPDFWLAIVAIVIFAVKLHvlptsgTGTFWHWV 173
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARK-RGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLG------WGILPGLG 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 174 LPVSVLFIRPFGLILQVVRGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITVIGDQAAAILNGAVVVETVFG 253
Cdd:cd06261    74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1042245865 254 F----PGIGKLMIDSILLRDFAVVLAVIMVSALAIFI 286
Cdd:cd06261   154 GeapgPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 97-258 1.50e-08

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 54.73  E-value: 1.50e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865  97 TFWLAVITMALVTVAAIVIGSLAAFrVGGVFDRLATFFSLIGAAAPDFWLAIVAIVIFavklhvlptsgTGTFWHWVLPV 176
Cdd:COG1173    81 SLLVGLLAVLIALVIGVLLGLLAGY-FGGWVDAVLMRLVDVLLAFPSLLLAIALVAVL-----------GPGLLNVILAL 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 177 SVLFIRPFGlilQVVRGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITvigdQAAAILNGAVVVETVFGFPG 256
Cdd:COG1173   149 GLTGWPGYA---RLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIV----QATLGIASAILAEAGLSFLG 221


                  ..
gi 1042245865 257 IG 258
Cdd:COG1173   222 LG 223
PRK15021 PRK15021
microcin C ABC transporter permease; Provisional
 109-258 1.52e-05

microcin C ABC transporter permease; Provisional


Pssm-ID: 184982 [Multi-domain]  Cd Length: 341  Bit Score: 45.74  E-value: 1.52e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 109 TVAAIVIGSLAAFrVGGVFDRLATFFSLIGAAAPDFWLAIVaivifavklhvLPTSGTGTFWhWVLPVSVLFirPFGLIL 188
Cdd:PRK15021  155 SVMGVLAGALQGY-YGGKVDLWGQRFIEVWSGMPTLFLIIL-----------LSSVVQPNFW-WLLAITVLF--GWMSLV 219

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 189 QVVRGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITVIgdqaAAILNGAVVVETVFGFPGIG 258
Cdd:PRK15021  220 GVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFL----PFILCSSITTLTSLDFLGFG 285
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
168-258 1.58e-03

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 39.41  E-value: 1.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1042245865 168 TFWHWVLPVSVLFIrPFglILQVVRGSMISVLSSAYVKTARAKGVRSTSIIFIHGLRNAMLPVITvigdQAAAILNGAVV 247
Cdd:PRK09881  155 SLFNAMLAIAIVRI-PF--YVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIV----QASLDIGSAIL 227

                          90
                  ....*....|.
gi 1042245865 248 VETVFGFPGIG 258
Cdd:PRK09881  228 MAATLGFIGLG 238
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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