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Conserved domains on  [gi|1022618881|ref|WP_063400435|]
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DoxX family protein [Prochlorococcus marinus]

Protein Classification

DoxX family protein( domain architecture ID 10542268)

DoxX family protein is an inner membrane protein

Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DoxX pfam07681
DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function ...
 11-94 5.42e-06

DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.


:

Pssm-ID: 429591  Cd Length: 84  Bit Score: 41.40  E-value: 5.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022618881  11 DFIGRLCLSAVFVVAVPSKIT-RFSLVVETISGQGIPAPlaPFLLLAAIACLVLGTVLLLFGKSQKIGASLLLIFLVPTT 89
Cdd:pfam07681   2 LLLLRLALGVLFIAHGLQKLFgGFAGTAGYFASLGLPPP--ALLAYLAILAELVGGLLLLLGLLTRLAALLLAVFMLVAI 79


                  ....*
gi 1022618881  90 IIFHA 94
Cdd:pfam07681  80 FLVHA 84
 
Name Accession Description Interval E-value
DoxX pfam07681
DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function ...
 11-94 5.42e-06

DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.


Pssm-ID: 429591  Cd Length: 84  Bit Score: 41.40  E-value: 5.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022618881  11 DFIGRLCLSAVFVVAVPSKIT-RFSLVVETISGQGIPAPlaPFLLLAAIACLVLGTVLLLFGKSQKIGASLLLIFLVPTT 89
Cdd:pfam07681   2 LLLLRLALGVLFIAHGLQKLFgGFAGTAGYFASLGLPPP--ALLAYLAILAELVGGLLLLLGLLTRLAALLLAVFMLVAI 79


                  ....*
gi 1022618881  90 IIFHA 94
Cdd:pfam07681  80 FLVHA 84
DoxX COG2259
Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];
12-94 1.79e-05

Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];


Pssm-ID: 441860  Cd Length: 134  Bit Score: 40.97  E-value: 1.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022618881  12 FIGRLCLSAVFVVAVPSKITRFSLVVETISGQGIPAPlaPFLLLAAIACLVLGTVLLLFGKSQKIGASLLLIFLVPTTII 91
Cdd:COG2259    12 LLLRLLLGLLFLAHGLQKLFGFDGTAGFFASLGLPLP--ALLAYLAGLAELVGGLLLILGLFTRLAALLLAGFMLVAIFV 89


                  ...
gi 1022618881  92 FHA 94
Cdd:COG2259    90 VHL 92
 
Name Accession Description Interval E-value
DoxX pfam07681
DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function ...
 11-94 5.42e-06

DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.


Pssm-ID: 429591  Cd Length: 84  Bit Score: 41.40  E-value: 5.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022618881  11 DFIGRLCLSAVFVVAVPSKIT-RFSLVVETISGQGIPAPlaPFLLLAAIACLVLGTVLLLFGKSQKIGASLLLIFLVPTT 89
Cdd:pfam07681   2 LLLLRLALGVLFIAHGLQKLFgGFAGTAGYFASLGLPPP--ALLAYLAILAELVGGLLLLLGLLTRLAALLLAVFMLVAI 79


                  ....*
gi 1022618881  90 IIFHA 94
Cdd:pfam07681  80 FLVHA 84
DoxX COG2259
Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];
12-94 1.79e-05

Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];


Pssm-ID: 441860  Cd Length: 134  Bit Score: 40.97  E-value: 1.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1022618881  12 FIGRLCLSAVFVVAVPSKITRFSLVVETISGQGIPAPlaPFLLLAAIACLVLGTVLLLFGKSQKIGASLLLIFLVPTTII 91
Cdd:COG2259    12 LLLRLLLGLLFLAHGLQKLFGFDGTAGFFASLGLPLP--ALLAYLAGLAELVGGLLLILGLFTRLAALLLAGFMLVAIFV 89


                  ...
gi 1022618881  92 FHA 94
Cdd:COG2259    90 VHL 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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