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Conserved domains on  [gi|1016498694|ref|WP_063085588|]
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Ig-like domain-containing protein [Escherichia coli]

Protein Classification

Ig-like domain-containing protein( domain architecture ID 10492496)

bacterial Ig-like domain-containing protein similar to human nuclear pore membrane glycoprotein 210 and Bacillus anthracis S-layer protein sap

PubMed:  10436082|9417933

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 59-134 7.93e-21

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


:

Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 80.13  E-value: 7.93e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1016498694  59 SVALTPDSVSVEKGKSVKLRVDVQPSNATNQKVTWTSQNSDKATVDQNGNVVGVAVGTATIEVASQDGSHKATATV 134
Cdd:pfam02368   2 SVTVSPTSVTVLVGATQQLTVYVTPSNASDKKVTWTSSNGSVATVSQTGLVTGVAAGKATITATSKDGNDKATKTV 77
 
Name Accession Description Interval E-value
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 59-134 7.93e-21

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 80.13  E-value: 7.93e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1016498694  59 SVALTPDSVSVEKGKSVKLRVDVQPSNATNQKVTWTSQNSDKATVDQNGNVVGVAVGTATIEVASQDGSHKATATV 134
Cdd:pfam02368   2 SVTVSPTSVTVLVGATQQLTVYVTPSNASDKKVTWTSSNGSVATVSQTGLVTGVAAGKATITATSKDGNDKATKTV 77
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 43-141 3.57e-15

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 71.26  E-value: 3.57e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016498694  43 AACFRTVPFTQSVSVESVALTPDSVSVEKGKSVKLRVDVQPSNATNQKVTWTSQNSDKATVDQNGNVVGVAVGTATIEVA 122
Cdd:COG5492   331 VTASSVATTVDVVPVTGVTLNPTSVTLAVGQTLTLTATVTPANATNKNVTWSSSDPSVATVDSNGLVTAVAAGTATITAT 410

                          90
                  ....*....|....*....
gi 1016498694 123 SQDGSHKATATVEVTAAPA 141
Cdd:COG5492   411 TKDGGKTATCTVTVTAAGS 429
BID_2 smart00635
Bacterial Ig-like domain 2;
57-133 2.88e-09

Bacterial Ig-like domain 2;


Pssm-ID: 214752 [Multi-domain]  Cd Length: 81  Bit Score: 50.48  E-value: 2.88e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016498694   57 VESVALTPDSVSVEKGKSVKLRVDVQPSNAT-NQKVTWTSQNSDKATVD-QNGNVV-GVAVGTATIEVASQDGSHKATAT 133
Cdd:smart00635   2 VTSVTVTPTTASVKKGLTLQLTATVTPSSAGvTGKVTWTSSNPSVATVVnASGLVVtAVAAGTATITATSGDGSSATGVI 81
 
Name Accession Description Interval E-value
Big_2 pfam02368
Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like ...
 59-134 7.93e-21

Bacterial Ig-like domain (group 2); This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.


Pssm-ID: 396788 [Multi-domain]  Cd Length: 77  Bit Score: 80.13  E-value: 7.93e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1016498694  59 SVALTPDSVSVEKGKSVKLRVDVQPSNATNQKVTWTSQNSDKATVDQNGNVVGVAVGTATIEVASQDGSHKATATV 134
Cdd:pfam02368   2 SVTVSPTSVTVLVGATQQLTVYVTPSNASDKKVTWTSSNGSVATVSQTGLVTGVAAGKATITATSKDGNDKATKTV 77
YjdB COG5492
Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction ...
 43-141 3.57e-15

Uncharacterized conserved protein YjdB, contains Ig-like domain [General function prediction only];


Pssm-ID: 444243 [Multi-domain]  Cd Length: 613  Bit Score: 71.26  E-value: 3.57e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016498694  43 AACFRTVPFTQSVSVESVALTPDSVSVEKGKSVKLRVDVQPSNATNQKVTWTSQNSDKATVDQNGNVVGVAVGTATIEVA 122
Cdd:COG5492   331 VTASSVATTVDVVPVTGVTLNPTSVTLAVGQTLTLTATVTPANATNKNVTWSSSDPSVATVDSNGLVTAVAAGTATITAT 410

                          90
                  ....*....|....*....
gi 1016498694 123 SQDGSHKATATVEVTAAPA 141
Cdd:COG5492   411 TKDGGKTATCTVTVTAAGS 429
BID_2 smart00635
Bacterial Ig-like domain 2;
57-133 2.88e-09

Bacterial Ig-like domain 2;


Pssm-ID: 214752 [Multi-domain]  Cd Length: 81  Bit Score: 50.48  E-value: 2.88e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1016498694   57 VESVALTPDSVSVEKGKSVKLRVDVQPSNAT-NQKVTWTSQNSDKATVD-QNGNVV-GVAVGTATIEVASQDGSHKATAT 133
Cdd:smart00635   2 VTSVTVTPTTASVKKGLTLQLTATVTPSSAGvTGKVTWTSSNPSVATVVnASGLVVtAVAAGTATITATSGDGSSATGVI 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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