|
Name |
Accession |
Description |
Interval |
E-value |
| Legion_RtxA_N |
NF041514 |
enhanced entry virulence factor RtxA, N-terminal domain; This HMM describes the N-terminal, ... |
1-339 |
0e+00 |
|
enhanced entry virulence factor RtxA, N-terminal domain; This HMM describes the N-terminal, non-repetitive portion of the Legionella virulence factor RxtA, named for the presence of tandem repeats-in-toxin (RTX) domains. RtxA can be four to six thousand amino acids long. In some isolates, the toxin is divided into two tandem ORFs but presumably re-form by recombination. RtxA is involved in adherence and cell entry.
:
Pssm-ID: 469400 [Multi-domain] Cd Length: 335 Bit Score: 658.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1 MLAESVIGIVRAVNGLLEKVNAQGQASLVKSGARLQEGDVLTLLSGEAYIQFIHGFPEALALGKPVNLYGVSPALQYGVE 80
Cdd:NF041514 1 MLAESVIGIVRAVNGLLEKVNAQGQASLVKSGARLEEGDVLTLLSGEAYIQFIHGFPEALALEKPVKLDGVSPTLQYGVE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 81 ELNEQLVQEALAKGIDPSVILDVLGSAAAGAEAVGSGGDAFIMDPLFGFGHVTAGYPTGPISFAYEADTQQLFWFVPEET 160
Cdd:NF041514 81 DLKEQMVQEAIAKGIDPSVILDVLGSAAAGAEAVGSGGDAFIIDPLFGFGQVTAGYPTGPISFAYEADTQQLFWFVPEET 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 161 GVIAESELTQEPESIPQIPQFTTNQAVLTVFEDALPSGIADSAGQARIASSSLSSLLTSSADVAASFAFNSNLSALPTLK 240
Cdd:NF041514 161 GVIAESELTTEPESIPQIPQFTTNQAVLTVFEDALPSGIPDSAGQARTASSSLSTLLTSSPDVAASFAFNTNLSALPTLK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 241 SGGIDLSYELSADKRTLTLRESntqgPGAEVMKFELTADGQLTQTLMNSIDHPTADSDDGEWMRLDLSPLIDVTFTRTID 320
Cdd:NF041514 241 SGGIDLDYELSSDKRTLTASEP----PGAEVMQFELTADGQLTQTLMDSIDHPTADSDDSEWMRLDLSPLIDVTFTRTSD 316
|
330
....*....|....*....
gi 1003952123 321 GSVLESRTLPANAVVAGIQ 339
Cdd:NF041514 317 GTVLESRTLPANAVVAGIQ 335
|
|
| DUF5801 |
pfam19116 |
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as ... |
521-692 |
2.08e-26 |
|
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as tandem repeats in a number of bacterial proteins.
:
Pssm-ID: 465976 [Multi-domain] Cd Length: 152 Bit Score: 106.94 E-value: 2.08e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 521 IIFEDDGPVVDMAVKAGAALTLDETkgvkagDANANDEAASAEANdigyaklvGSDLFTLtkDAGSDGEQST--LFKLLV 598
Cdd:pfam19116 1 ISFEDDGPSITASAGEAPTLTVDET------ALGTGGGLADATAS--------FAGLFTS--DFGADGAGSTgsTYSLSL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 599 SAPS-SGLVDTATNQAIVLSANAGgtEVLGK-NTNGDVVFKVLLTASNGDVEVFQYRAIKHENASDHDESGAggiierIQ 676
Cdd:pfam19116 65 SAGAaSGLTDTATGQAILLFLEGG--VVVGRtAGGGDVVFTVSVDAATGEVTLTQYRAVVHPDTSDPDDSVS------LA 136
|
170
....*....|....*.
gi 1003952123 677 AGSLKLEVTLTDKDGD 692
Cdd:pfam19116 137 AGLITLTATVTDGDGD 152
|
|
| T1SS_VCA0849 |
TIGR03661 |
type I secretion C-terminal target domain (VC_A0849 subclass); This model represents a ... |
2271-2369 |
1.63e-17 |
|
type I secretion C-terminal target domain (VC_A0849 subclass); This model represents a C-terminal domain associated with secretion by type 1 secretion systems (T1SS). Members of this subclass do not include the RtxA toxin of Vibrio cholerae and its homologs, although the two classes of proteins share large size, occurrence in genomes with T1SS, regions with long tandem repeats, and regions with the glycine-rich repeat modeled by pfam00353. [Cellular processes, Pathogenesis]
:
Pssm-ID: 274707 Cd Length: 88 Bit Score: 79.31 E-value: 1.63e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 2271 DTITDFKANPvdqssdaSVLNLSDLLSDADLETNSLDNYLNVSTTEE-GDTAIKVDPNGNGNFDAPAQTIILEDVDLTAv 2349
Cdd:TIGR03661 1 DTITDFTLGE-------DKLDLSDLLSGEGVSSANLDQYLNVTTSGEdGNTVISVDSDGSAGSAAVTQTITLEGVDLSS- 72
|
90 100
....*....|....*....|
gi 1003952123 2350 fatnNSHDIVNQMIANGNLI 2369
Cdd:TIGR03661 73 ----TSADIINQLLDNNQLI 88
|
|
| DUF5801 |
pfam19116 |
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as ... |
338-509 |
2.43e-14 |
|
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as tandem repeats in a number of bacterial proteins.
:
Pssm-ID: 465976 [Multi-domain] Cd Length: 152 Bit Score: 72.66 E-value: 2.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 338 IQDDVP-IARAQLTNNEILLDETigmkvGDVDAANDDFNPTTTADPFNNTYGIpiglvqnanllDTSTSEmGGDYKNATm 416
Cdd:pfam19116 3 FEDDGPsITASAGEAPTLTVDET-----ALGTGGGLADATASFAGLFTSDFGA-----------DGAGST-GSTYSLSL- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 417 thlikITDAVSGL-QTTDGTPVNLFLEsNGDISGRAGDiGAPAVFAIRMNPNTGAITVAQYGSIKQFDTNSYDEAVDLT- 494
Cdd:pfam19116 65 -----SAGAASGLtDTATGQAILLFLE-GGVVVGRTAG-GGDVVFTVSVDAATGEVTLTQYRAVVHPDTSDPDDSVSLAa 137
|
170
....*....|....*
gi 1003952123 495 GRISVVVTAKDSDGD 509
Cdd:pfam19116 138 GLITLTATVTDGDGD 152
|
|
| DUF5801 |
pfam19116 |
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as ... |
704-849 |
1.84e-12 |
|
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as tandem repeats in a number of bacterial proteins.
:
Pssm-ID: 465976 [Multi-domain] Cd Length: 152 Bit Score: 67.27 E-value: 1.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 704 MRFEDDGPVAGTI-----SLVADEDNLprgnNDTASGDAAQSNLTGTLPVNFGADGAGSIDFQ--------GMHGLSAVI 770
Cdd:pfam19116 1 ISFEDDGPSITASageapTLTVDETAL----GTGGGLADATASFAGLFTSDFGADGAGSTGSTyslslsagAASGLTDTA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 771 GNDNITYNWNAstNTLTAYQTGGALgvnDVFKIVVNPTTGQYTFTLLAAINHHAVADNTE--GLVDPFVNLNYRVIDGDG 848
Cdd:pfam19116 77 TGQAILLFLEG--GVVVGRTAGGGD---VVFTVSVDAATGEVTLTQYRAVVHPDTSDPDDsvSLAAGLITLTATVTDGDG 151
|
.
gi 1003952123 849 D 849
Cdd:pfam19116 152 D 152
|
|
| Peptidase_M10_C super family |
cl23859 |
Peptidase M10 serralysin C terminal; Serralysins are peptidases related to mammalian matrix ... |
1678-1750 |
4.95e-12 |
|
Peptidase M10 serralysin C terminal; Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.
The actual alignment was detected with superfamily member pfam08548:
Pssm-ID: 451582 [Multi-domain] Cd Length: 222 Bit Score: 67.78 E-value: 4.95e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1003952123 1678 GQEGNDVIDAGSGDDVIDAGSGDDVIVGGTGNDTLTGGSGADQFVFFRGHGSNnagTAPTDIITDFEVNIDKI 1750
Cdd:pfam08548 86 GGSGNDVLIGNDADNILKGGAGNDILYGGGGADQLWGGAGNDIFVYASAKDSL---TAAPDTIRDFVSGIDKI 155
|
|
| VWA_2 |
pfam13519 |
von Willebrand factor type A domain; |
1304-1410 |
2.56e-08 |
|
von Willebrand factor type A domain;
:
Pssm-ID: 463909 [Multi-domain] Cd Length: 103 Bit Score: 53.84 E-value: 2.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1304 LAFILDESGSMSQNFGGTTRLEVLKQAMTDILTELSNTpnasiTVHLVKFASVVNGTGTFeitGGGLQQALDFISGLQIQ 1383
Cdd:pfam13519 1 LVFVLDTSGSMRNGDYGPTRLEAAKDAVLALLKSLPGD-----RVGLVTFGDGPEVLIPL---TKDRAKILRALRRLEPK 72
|
90 100
....*....|....*....|....*..
gi 1003952123 1384 QGllaGTNYEAALGQTVQWFSSQSGTV 1410
Cdd:pfam13519 73 GG---GTNLAAALQLARAALKHRRKNQ 96
|
|
| HemolysinCabind |
pfam00353 |
RTX calcium-binding nonapeptide repeat (4 copies); |
2225-2259 |
4.13e-07 |
|
RTX calcium-binding nonapeptide repeat (4 copies);
:
Pssm-ID: 459777 [Multi-domain] Cd Length: 36 Bit Score: 48.20 E-value: 4.13e-07
10 20 30
....*....|....*....|....*....|....*
gi 1003952123 2225 GGNGNDVLHGTTGNDFIRGGQGNDTMTGGGGVDTF 2259
Cdd:pfam00353 2 GGDGNDTLVGGAGNDTIYGGAGNDTLDGGAGNDTL 36
|
|
| FhaB super family |
cl27105 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
749-1604 |
3.84e-06 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
The actual alignment was detected with superfamily member COG3210:
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 52.46 E-value: 3.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 749 NFGADGAGSIDFQGMHGlSAVIGNDNITYNWNASTNTLTAYQTGGALGVNDVFKIVVNPTTGQYTFTLLAAINHHAVADN 828
Cdd:COG3210 803 TITAAGTTAINVTGSGG-TITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGS 881
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 829 TEGLVDPFVNLNYRVIDGDGDTAIGTLKVTIDDDIPKAITPEEGFVTNQAGIVRTFDLDFDANIDNNVGADQLGTITFSG 908
Cdd:COG3210 882 GGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASD 961
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 909 ITNGQVVTGTVDGVPNQTLTSGGSAIHYYVSGNNVVEGWINGGPGDVGSTIVFRTTLQPDMNYNASNDTYKFELFQPIST 988
Cdd:COG3210 962 GAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAG 1041
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 989 STNVSIANFSGVNATSREFIYLENASGPGEDILFSAYIRNDNGTFTDATVNTNPDGIGVNNQNMNDRENLRVDFVRNAST 1068
Cdd:COG3210 1042 GQNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKV 1121
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1069 TGTNQNMTYEYDDHYLVNNFSFKIIQVTGNppTGSLEVWVRAYNADDDDPTDNTASSANNLAHQDALRDDPQVALTQILV 1148
Cdd:COG3210 1122 GGTTTVGATGTSTASTEAAGAGTLTGLVAV--SAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLK 1199
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1149 NGVPVTPTTVNASGGYLISGLNLNDTITIRSANGYDRVEIENPRSGAHGVSNSSLNNETFDIGLFSYNTIKTTPSEININ 1228
Cdd:COG3210 1200 GGDSTGGSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGA 1279
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1229 MGLSLTDSDGDKINSSIEINLAPSVFKVGENVDDTSSSNVPHRVGGDTGVIDGSGGADILVGDVGGVEVVGTTARLAFIL 1308
Cdd:COG3210 1280 TATGSTVDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGAT 1359
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1309 DESGSMSQNFGGTTRLEVLKQAMTDILTELSNTPNASITVHLVKFASVVNGTGTFEITGGGLQQALDFISGLQIQQGLLA 1388
Cdd:COG3210 1360 DSAAGAGSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSGTGVGNNGGVSGTTVAGTTGSSATTGTGGTGN 1439
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1389 GTNYEAALGQTVQWFSSQSGTVDVQQTLFFTDGVPTFYMDGNSTEYTNLARVYGNGSQTEEVLWENLFGEHAGGQATSDR 1468
Cdd:COG3210 1440 TTGTSVAGAGGGNADASAINTGNASSLGAGGSTAGNAVGGAVIGGTTTGGNGAGVAGATASNGGTSTGAGGTAGGTTAEV 1519
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1469 INNLTESDSRDLDGLQSYSIDTNNDGIFEIQSVNSRSSGTTQTTNDLVRSVADTFNEVQALQAYGPLRAVSIADNANVYL 1548
Cdd:COG3210 1520 AKASLEGGEGTYGGSSVAEAGTGGGILGAVSGAGSEGGAAGGVTGSVGVGGTDGAGGDTGGADDTGAQAPTAGNTATLTL 1599
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*.
gi 1003952123 1549 QEIDSTGQPYLADSPEVLQDILDELNPFNVLLAAGSDTIQANQEDDLIFGDVLFTD 1604
Cdd:COG3210 1600 SLAEGTNAEYGGTTNVTSGTAGNAGATGANSNTVVTTNGGEGVLALVAGGNTTNGT 1655
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Legion_RtxA_N |
NF041514 |
enhanced entry virulence factor RtxA, N-terminal domain; This HMM describes the N-terminal, ... |
1-339 |
0e+00 |
|
enhanced entry virulence factor RtxA, N-terminal domain; This HMM describes the N-terminal, non-repetitive portion of the Legionella virulence factor RxtA, named for the presence of tandem repeats-in-toxin (RTX) domains. RtxA can be four to six thousand amino acids long. In some isolates, the toxin is divided into two tandem ORFs but presumably re-form by recombination. RtxA is involved in adherence and cell entry.
Pssm-ID: 469400 [Multi-domain] Cd Length: 335 Bit Score: 658.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1 MLAESVIGIVRAVNGLLEKVNAQGQASLVKSGARLQEGDVLTLLSGEAYIQFIHGFPEALALGKPVNLYGVSPALQYGVE 80
Cdd:NF041514 1 MLAESVIGIVRAVNGLLEKVNAQGQASLVKSGARLEEGDVLTLLSGEAYIQFIHGFPEALALEKPVKLDGVSPTLQYGVE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 81 ELNEQLVQEALAKGIDPSVILDVLGSAAAGAEAVGSGGDAFIMDPLFGFGHVTAGYPTGPISFAYEADTQQLFWFVPEET 160
Cdd:NF041514 81 DLKEQMVQEAIAKGIDPSVILDVLGSAAAGAEAVGSGGDAFIIDPLFGFGQVTAGYPTGPISFAYEADTQQLFWFVPEET 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 161 GVIAESELTQEPESIPQIPQFTTNQAVLTVFEDALPSGIADSAGQARIASSSLSSLLTSSADVAASFAFNSNLSALPTLK 240
Cdd:NF041514 161 GVIAESELTTEPESIPQIPQFTTNQAVLTVFEDALPSGIPDSAGQARTASSSLSTLLTSSPDVAASFAFNTNLSALPTLK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 241 SGGIDLSYELSADKRTLTLRESntqgPGAEVMKFELTADGQLTQTLMNSIDHPTADSDDGEWMRLDLSPLIDVTFTRTID 320
Cdd:NF041514 241 SGGIDLDYELSSDKRTLTASEP----PGAEVMQFELTADGQLTQTLMDSIDHPTADSDDSEWMRLDLSPLIDVTFTRTSD 316
|
330
....*....|....*....
gi 1003952123 321 GSVLESRTLPANAVVAGIQ 339
Cdd:NF041514 317 GTVLESRTLPANAVVAGIQ 335
|
|
| DUF5801 |
pfam19116 |
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as ... |
521-692 |
2.08e-26 |
|
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as tandem repeats in a number of bacterial proteins.
Pssm-ID: 465976 [Multi-domain] Cd Length: 152 Bit Score: 106.94 E-value: 2.08e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 521 IIFEDDGPVVDMAVKAGAALTLDETkgvkagDANANDEAASAEANdigyaklvGSDLFTLtkDAGSDGEQST--LFKLLV 598
Cdd:pfam19116 1 ISFEDDGPSITASAGEAPTLTVDET------ALGTGGGLADATAS--------FAGLFTS--DFGADGAGSTgsTYSLSL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 599 SAPS-SGLVDTATNQAIVLSANAGgtEVLGK-NTNGDVVFKVLLTASNGDVEVFQYRAIKHENASDHDESGAggiierIQ 676
Cdd:pfam19116 65 SAGAaSGLTDTATGQAILLFLEGG--VVVGRtAGGGDVVFTVSVDAATGEVTLTQYRAVVHPDTSDPDDSVS------LA 136
|
170
....*....|....*.
gi 1003952123 677 AGSLKLEVTLTDKDGD 692
Cdd:pfam19116 137 AGLITLTATVTDGDGD 152
|
|
| T1SS_VCA0849 |
TIGR03661 |
type I secretion C-terminal target domain (VC_A0849 subclass); This model represents a ... |
2271-2369 |
1.63e-17 |
|
type I secretion C-terminal target domain (VC_A0849 subclass); This model represents a C-terminal domain associated with secretion by type 1 secretion systems (T1SS). Members of this subclass do not include the RtxA toxin of Vibrio cholerae and its homologs, although the two classes of proteins share large size, occurrence in genomes with T1SS, regions with long tandem repeats, and regions with the glycine-rich repeat modeled by pfam00353. [Cellular processes, Pathogenesis]
Pssm-ID: 274707 Cd Length: 88 Bit Score: 79.31 E-value: 1.63e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 2271 DTITDFKANPvdqssdaSVLNLSDLLSDADLETNSLDNYLNVSTTEE-GDTAIKVDPNGNGNFDAPAQTIILEDVDLTAv 2349
Cdd:TIGR03661 1 DTITDFTLGE-------DKLDLSDLLSGEGVSSANLDQYLNVTTSGEdGNTVISVDSDGSAGSAAVTQTITLEGVDLSS- 72
|
90 100
....*....|....*....|
gi 1003952123 2350 fatnNSHDIVNQMIANGNLI 2369
Cdd:TIGR03661 73 ----TSADIINQLLDNNQLI 88
|
|
| DUF5801 |
pfam19116 |
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as ... |
338-509 |
2.43e-14 |
|
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as tandem repeats in a number of bacterial proteins.
Pssm-ID: 465976 [Multi-domain] Cd Length: 152 Bit Score: 72.66 E-value: 2.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 338 IQDDVP-IARAQLTNNEILLDETigmkvGDVDAANDDFNPTTTADPFNNTYGIpiglvqnanllDTSTSEmGGDYKNATm 416
Cdd:pfam19116 3 FEDDGPsITASAGEAPTLTVDET-----ALGTGGGLADATASFAGLFTSDFGA-----------DGAGST-GSTYSLSL- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 417 thlikITDAVSGL-QTTDGTPVNLFLEsNGDISGRAGDiGAPAVFAIRMNPNTGAITVAQYGSIKQFDTNSYDEAVDLT- 494
Cdd:pfam19116 65 -----SAGAASGLtDTATGQAILLFLE-GGVVVGRTAG-GGDVVFTVSVDAATGEVTLTQYRAVVHPDTSDPDDSVSLAa 137
|
170
....*....|....*
gi 1003952123 495 GRISVVVTAKDSDGD 509
Cdd:pfam19116 138 GLITLTATVTDGDGD 152
|
|
| DUF5801 |
pfam19116 |
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as ... |
704-849 |
1.84e-12 |
|
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as tandem repeats in a number of bacterial proteins.
Pssm-ID: 465976 [Multi-domain] Cd Length: 152 Bit Score: 67.27 E-value: 1.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 704 MRFEDDGPVAGTI-----SLVADEDNLprgnNDTASGDAAQSNLTGTLPVNFGADGAGSIDFQ--------GMHGLSAVI 770
Cdd:pfam19116 1 ISFEDDGPSITASageapTLTVDETAL----GTGGGLADATASFAGLFTSDFGADGAGSTGSTyslslsagAASGLTDTA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 771 GNDNITYNWNAstNTLTAYQTGGALgvnDVFKIVVNPTTGQYTFTLLAAINHHAVADNTE--GLVDPFVNLNYRVIDGDG 848
Cdd:pfam19116 77 TGQAILLFLEG--GVVVGRTAGGGD---VVFTVSVDAATGEVTLTQYRAVVHPDTSDPDDsvSLAAGLITLTATVTDGDG 151
|
.
gi 1003952123 849 D 849
Cdd:pfam19116 152 D 152
|
|
| Peptidase_M10_C |
pfam08548 |
Peptidase M10 serralysin C terminal; Serralysins are peptidases related to mammalian matrix ... |
1678-1750 |
4.95e-12 |
|
Peptidase M10 serralysin C terminal; Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.
Pssm-ID: 430067 [Multi-domain] Cd Length: 222 Bit Score: 67.78 E-value: 4.95e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1003952123 1678 GQEGNDVIDAGSGDDVIDAGSGDDVIVGGTGNDTLTGGSGADQFVFFRGHGSNnagTAPTDIITDFEVNIDKI 1750
Cdd:pfam08548 86 GGSGNDVLIGNDADNILKGGAGNDILYGGGGADQLWGGAGNDIFVYASAKDSL---TAAPDTIRDFVSGIDKI 155
|
|
| VWA_2 |
pfam13519 |
von Willebrand factor type A domain; |
1304-1410 |
2.56e-08 |
|
von Willebrand factor type A domain;
Pssm-ID: 463909 [Multi-domain] Cd Length: 103 Bit Score: 53.84 E-value: 2.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1304 LAFILDESGSMSQNFGGTTRLEVLKQAMTDILTELSNTpnasiTVHLVKFASVVNGTGTFeitGGGLQQALDFISGLQIQ 1383
Cdd:pfam13519 1 LVFVLDTSGSMRNGDYGPTRLEAAKDAVLALLKSLPGD-----RVGLVTFGDGPEVLIPL---TKDRAKILRALRRLEPK 72
|
90 100
....*....|....*....|....*..
gi 1003952123 1384 QGllaGTNYEAALGQTVQWFSSQSGTV 1410
Cdd:pfam13519 73 GG---GTNLAAALQLARAALKHRRKNQ 96
|
|
| T1SS_rpt_143 |
TIGR03660 |
T1SS-143 repeat domain; This model represents a domain of about 143 amino acids that may occur ... |
775-867 |
2.68e-08 |
|
T1SS-143 repeat domain; This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion. [Cellular processes, Pathogenesis]
Pssm-ID: 132699 [Multi-domain] Cd Length: 137 Bit Score: 54.60 E-value: 2.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 775 ITYNWNASTNTLTAYQtgGALGVNDVFKIVVNpTTGQYTFTLLAAINHHAVADNTEglvdpfVNLNYRVIDGDGDTAIGT 854
Cdd:TIGR03660 34 VTLSETSNADGNFTYT--ATAGGNPVFTLTLN-ADGSYEFTLEGPLDHAAGSDELT------LNFPIIATDFDGDTSSIT 104
|
90
....*....|...
gi 1003952123 855 LKVTIDDDIPKAI 867
Cdd:TIGR03660 105 LPVTIVDDVPTIT 117
|
|
| vWFA |
cd00198 |
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ... |
1302-1439 |
6.34e-08 |
|
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Pssm-ID: 238119 [Multi-domain] Cd Length: 161 Bit Score: 54.49 E-value: 6.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1302 ARLAFILDESGSMSQnfggtTRLEVLKQAMTDILTELSNTPNASiTVHLVKFASVVNGTGTFEiTGGGLQQALDFISGLQ 1381
Cdd:cd00198 1 ADIVFLLDVSGSMGG-----EKLDKAKEALKALVSSLSASPPGD-RVGLVTFGSNARVVLPLT-TDTDKADLLEAIDALK 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1003952123 1382 IQQGllAGTNYEAALGQTVQWFSSQSGTVDVQQTLFFTDGVPTFYMDGNSTEYTNLAR 1439
Cdd:cd00198 74 KGLG--GGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRK 129
|
|
| COG2931 |
COG2931 |
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and ... |
1661-1764 |
6.73e-08 |
|
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442175 [Multi-domain] Cd Length: 252 Bit Score: 56.07 E-value: 6.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1661 SGGHDIISGGQGDDRIYGQEGNDVIDAGSGDDVIDAGSGDDVIVGGTGNDTLTGGSGADQFVFFRGHGSNNAGTAPTDII 1740
Cdd:COG2931 127 GAGDDTLYGGAGNDTLTGGAGNDTLYGGAGNDTLYGGAGNDTLDGGAGNDTLTGGAGNDTLTGGAGNDTLDGGGGDDTLG 206
|
90 100
....*....|....*....|....
gi 1003952123 1741 TDFEVNIDKIVINANNIIGVSVSN 1764
Cdd:COG2931 207 GGGGDDGLDGGDGDDGLGGGGGDD 230
|
|
| HemolysinCabind |
pfam00353 |
RTX calcium-binding nonapeptide repeat (4 copies); |
2225-2259 |
4.13e-07 |
|
RTX calcium-binding nonapeptide repeat (4 copies);
Pssm-ID: 459777 [Multi-domain] Cd Length: 36 Bit Score: 48.20 E-value: 4.13e-07
10 20 30
....*....|....*....|....*....|....*
gi 1003952123 2225 GGNGNDVLHGTTGNDFIRGGQGNDTMTGGGGVDTF 2259
Cdd:pfam00353 2 GGDGNDTLVGGAGNDTIYGGAGNDTLDGGAGNDTL 36
|
|
| TerY |
COG4245 |
Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown]; |
1306-1424 |
1.44e-06 |
|
Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown];
Pssm-ID: 443387 [Multi-domain] Cd Length: 196 Bit Score: 51.08 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1306 FILDESGSMSqnfggTTRLEVLKQAMTDILTELSNTPNASITVHLvkfaSVVngtgTFeitGGGLQQALDF--ISGLQIQ 1383
Cdd:COG4245 10 LLLDTSGSMS-----GEPIEALNEGLQALIDELRQDPYALETVEV----SVI----TF---DGEAKVLLPLtdLEDFQPP 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1384 QgLLA--GTNYEAALG------QTVQWFSSQSGTVDVQQTLFF-TDGVPT 1424
Cdd:COG4245 74 D-LSAsgGTPLGAALEllldliERRVQKYTAEGKGDWRPVVFLiTDGEPT 122
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
749-1604 |
3.84e-06 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 52.46 E-value: 3.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 749 NFGADGAGSIDFQGMHGlSAVIGNDNITYNWNASTNTLTAYQTGGALGVNDVFKIVVNPTTGQYTFTLLAAINHHAVADN 828
Cdd:COG3210 803 TITAAGTTAINVTGSGG-TITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGS 881
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 829 TEGLVDPFVNLNYRVIDGDGDTAIGTLKVTIDDDIPKAITPEEGFVTNQAGIVRTFDLDFDANIDNNVGADQLGTITFSG 908
Cdd:COG3210 882 GGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASD 961
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 909 ITNGQVVTGTVDGVPNQTLTSGGSAIHYYVSGNNVVEGWINGGPGDVGSTIVFRTTLQPDMNYNASNDTYKFELFQPIST 988
Cdd:COG3210 962 GAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAG 1041
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 989 STNVSIANFSGVNATSREFIYLENASGPGEDILFSAYIRNDNGTFTDATVNTNPDGIGVNNQNMNDRENLRVDFVRNAST 1068
Cdd:COG3210 1042 GQNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKV 1121
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1069 TGTNQNMTYEYDDHYLVNNFSFKIIQVTGNppTGSLEVWVRAYNADDDDPTDNTASSANNLAHQDALRDDPQVALTQILV 1148
Cdd:COG3210 1122 GGTTTVGATGTSTASTEAAGAGTLTGLVAV--SAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLK 1199
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1149 NGVPVTPTTVNASGGYLISGLNLNDTITIRSANGYDRVEIENPRSGAHGVSNSSLNNETFDIGLFSYNTIKTTPSEININ 1228
Cdd:COG3210 1200 GGDSTGGSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGA 1279
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1229 MGLSLTDSDGDKINSSIEINLAPSVFKVGENVDDTSSSNVPHRVGGDTGVIDGSGGADILVGDVGGVEVVGTTARLAFIL 1308
Cdd:COG3210 1280 TATGSTVDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGAT 1359
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1309 DESGSMSQNFGGTTRLEVLKQAMTDILTELSNTPNASITVHLVKFASVVNGTGTFEITGGGLQQALDFISGLQIQQGLLA 1388
Cdd:COG3210 1360 DSAAGAGSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSGTGVGNNGGVSGTTVAGTTGSSATTGTGGTGN 1439
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1389 GTNYEAALGQTVQWFSSQSGTVDVQQTLFFTDGVPTFYMDGNSTEYTNLARVYGNGSQTEEVLWENLFGEHAGGQATSDR 1468
Cdd:COG3210 1440 TTGTSVAGAGGGNADASAINTGNASSLGAGGSTAGNAVGGAVIGGTTTGGNGAGVAGATASNGGTSTGAGGTAGGTTAEV 1519
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1469 INNLTESDSRDLDGLQSYSIDTNNDGIFEIQSVNSRSSGTTQTTNDLVRSVADTFNEVQALQAYGPLRAVSIADNANVYL 1548
Cdd:COG3210 1520 AKASLEGGEGTYGGSSVAEAGTGGGILGAVSGAGSEGGAAGGVTGSVGVGGTDGAGGDTGGADDTGAQAPTAGNTATLTL 1599
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*.
gi 1003952123 1549 QEIDSTGQPYLADSPEVLQDILDELNPFNVLLAAGSDTIQANQEDDLIFGDVLFTD 1604
Cdd:COG3210 1600 SLAEGTNAEYGGTTNVTSGTAGNAGATGANSNTVVTTNGGEGVLALVAGGNTTNGT 1655
|
|
| HemolysinCabind |
pfam00353 |
RTX calcium-binding nonapeptide repeat (4 copies); |
1661-1694 |
7.10e-06 |
|
RTX calcium-binding nonapeptide repeat (4 copies);
Pssm-ID: 459777 [Multi-domain] Cd Length: 36 Bit Score: 44.74 E-value: 7.10e-06
10 20 30
....*....|....*....|....*....|....
gi 1003952123 1661 SGGHDIISGGQGDDRIYGQEGNDVIDAGSGDDVI 1694
Cdd:pfam00353 3 GDGNDTLVGGAGNDTIYGGAGNDTLDGGAGNDTL 36
|
|
| COG2931 |
COG2931 |
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and ... |
1568-1722 |
2.56e-04 |
|
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442175 [Multi-domain] Cd Length: 252 Bit Score: 45.28 E-value: 2.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1568 DILDELNPFNVLLAAGSDTIQANQEDDLIFGDVLFTDKLAEDEGLDLPKGSGWAVFEELEANHGWSRQDTLDYIRNHADE 1647
Cdd:COG2931 7 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDGGGGGGGGGGGGGGGGLDGGGGGGGGDGGGGGGGDD 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1003952123 1648 LGRETVLSSGSKRSGGHDIISGGQGDDRIYGQEGNDVIDAGSGDDVIDAGSGDDVIVGGTGNDTLTGGSGADQFV 1722
Cdd:COG2931 87 TDGGGDGGDGGGGGTGDDTGDGGGGNDTLTGGDGNDTLTGGAGDDTLYGGAGNDTLTGGAGNDTLYGGAGNDTLY 161
|
|
| retention_LapA |
NF033682 |
retention module-containing protein; The retention module, as described for the giant adhesin ... |
5-138 |
1.18e-03 |
|
retention module-containing protein; The retention module, as described for the giant adhesin LapA of Pseudomonas fluorescens and for an ice-binding giant adhesin of an Antarctic bacterium, appears at the N-terminus of a number of very large repetitive proteins, many of which have C-terminal regions that make them substrates for type I secretion systems.
Pssm-ID: 468140 Cd Length: 145 Bit Score: 41.47 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 5 SVIGIVRAVNGLLEKVNAQGQASLVKSGARLQEGDVL-TLLSGEAYIQFIHGFPEALALGKPVNLYGVSPALQYGVEELN 83
Cdd:NF033682 1 TQVAVVKAVSGTVFAVNADGSVRVLKVGDTLQAGEIViTGNGAAVELQLADGSTLTLGENCVACVTEDNGLIEFDAEEAA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1003952123 84 E--------QLVQEALAKGIDPSVILDvlGSAAAGAEAVGSGGDAFIM-DPLFGFGHVTAGYPT 138
Cdd:NF033682 81 AasfddpdiAAIQAAILAGADPTELLE--ATAAGLAGGAGGAGGGFVTiDRNGDEVLPSTGFPT 142
|
|
| VWA |
smart00327 |
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ... |
1304-1428 |
1.67e-03 |
|
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Pssm-ID: 214621 [Multi-domain] Cd Length: 175 Bit Score: 41.67 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1304 LAFILDESGSMSQNfggttRLEVLKQAMTDILTELSNTPNaSITVHLVKFASVVngtgTFEITGGGLQQALDFISGLQ-I 1382
Cdd:smart00327 2 VVFLLDGSGSMGGN-----RFELAKEFVLKLVEQLDIGPD-GDRVGLVTFSDDA----RVLFPLNDSRSKDALLEALAsL 71
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1003952123 1383 QQGLLAGTNYEAALGQTVQ-WFSSQSGT-VDVQQTL-FFTDGVPTFYMD 1428
Cdd:smart00327 72 SYKLGGGTNLGAALQYALEnLFSKSAGSrRGAPKVViLITDGESNDGPK 120
|
|
| COG2931 |
COG2931 |
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and ... |
2223-2322 |
1.77e-03 |
|
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442175 [Multi-domain] Cd Length: 252 Bit Score: 42.59 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 2223 LNGGNGNDVLHGTTGNDFIRGGQGNDTMTGGGGVDTFFWLSGDDDGGVDTITDFKANPVDQSSDASVLNLSDLLSDADLE 2302
Cdd:COG2931 151 LYGGAGNDTLYGGAGNDTLDGGAGNDTLTGGAGNDTLTGGAGNDTLDGGGGDDTLGGGGGDDGLDGGDGDDGLGGGGGDD 230
|
90 100
....*....|....*....|
gi 1003952123 2303 TNSLDNYLNVSTTEEGDTAI 2322
Cdd:COG2931 231 TLGGGGGGDGGGGGGGDDGL 250
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Legion_RtxA_N |
NF041514 |
enhanced entry virulence factor RtxA, N-terminal domain; This HMM describes the N-terminal, ... |
1-339 |
0e+00 |
|
enhanced entry virulence factor RtxA, N-terminal domain; This HMM describes the N-terminal, non-repetitive portion of the Legionella virulence factor RxtA, named for the presence of tandem repeats-in-toxin (RTX) domains. RtxA can be four to six thousand amino acids long. In some isolates, the toxin is divided into two tandem ORFs but presumably re-form by recombination. RtxA is involved in adherence and cell entry.
Pssm-ID: 469400 [Multi-domain] Cd Length: 335 Bit Score: 658.22 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1 MLAESVIGIVRAVNGLLEKVNAQGQASLVKSGARLQEGDVLTLLSGEAYIQFIHGFPEALALGKPVNLYGVSPALQYGVE 80
Cdd:NF041514 1 MLAESVIGIVRAVNGLLEKVNAQGQASLVKSGARLEEGDVLTLLSGEAYIQFIHGFPEALALEKPVKLDGVSPTLQYGVE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 81 ELNEQLVQEALAKGIDPSVILDVLGSAAAGAEAVGSGGDAFIMDPLFGFGHVTAGYPTGPISFAYEADTQQLFWFVPEET 160
Cdd:NF041514 81 DLKEQMVQEAIAKGIDPSVILDVLGSAAAGAEAVGSGGDAFIIDPLFGFGQVTAGYPTGPISFAYEADTQQLFWFVPEET 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 161 GVIAESELTQEPESIPQIPQFTTNQAVLTVFEDALPSGIADSAGQARIASSSLSSLLTSSADVAASFAFNSNLSALPTLK 240
Cdd:NF041514 161 GVIAESELTTEPESIPQIPQFTTNQAVLTVFEDALPSGIPDSAGQARTASSSLSTLLTSSPDVAASFAFNTNLSALPTLK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 241 SGGIDLSYELSADKRTLTLRESntqgPGAEVMKFELTADGQLTQTLMNSIDHPTADSDDGEWMRLDLSPLIDVTFTRTID 320
Cdd:NF041514 241 SGGIDLDYELSSDKRTLTASEP----PGAEVMQFELTADGQLTQTLMDSIDHPTADSDDSEWMRLDLSPLIDVTFTRTSD 316
|
330
....*....|....*....
gi 1003952123 321 GSVLESRTLPANAVVAGIQ 339
Cdd:NF041514 317 GTVLESRTLPANAVVAGIQ 335
|
|
| DUF5801 |
pfam19116 |
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as ... |
521-692 |
2.08e-26 |
|
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as tandem repeats in a number of bacterial proteins.
Pssm-ID: 465976 [Multi-domain] Cd Length: 152 Bit Score: 106.94 E-value: 2.08e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 521 IIFEDDGPVVDMAVKAGAALTLDETkgvkagDANANDEAASAEANdigyaklvGSDLFTLtkDAGSDGEQST--LFKLLV 598
Cdd:pfam19116 1 ISFEDDGPSITASAGEAPTLTVDET------ALGTGGGLADATAS--------FAGLFTS--DFGADGAGSTgsTYSLSL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 599 SAPS-SGLVDTATNQAIVLSANAGgtEVLGK-NTNGDVVFKVLLTASNGDVEVFQYRAIKHENASDHDESGAggiierIQ 676
Cdd:pfam19116 65 SAGAaSGLTDTATGQAILLFLEGG--VVVGRtAGGGDVVFTVSVDAATGEVTLTQYRAVVHPDTSDPDDSVS------LA 136
|
170
....*....|....*.
gi 1003952123 677 AGSLKLEVTLTDKDGD 692
Cdd:pfam19116 137 AGLITLTATVTDGDGD 152
|
|
| T1SS_VCA0849 |
TIGR03661 |
type I secretion C-terminal target domain (VC_A0849 subclass); This model represents a ... |
2271-2369 |
1.63e-17 |
|
type I secretion C-terminal target domain (VC_A0849 subclass); This model represents a C-terminal domain associated with secretion by type 1 secretion systems (T1SS). Members of this subclass do not include the RtxA toxin of Vibrio cholerae and its homologs, although the two classes of proteins share large size, occurrence in genomes with T1SS, regions with long tandem repeats, and regions with the glycine-rich repeat modeled by pfam00353. [Cellular processes, Pathogenesis]
Pssm-ID: 274707 Cd Length: 88 Bit Score: 79.31 E-value: 1.63e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 2271 DTITDFKANPvdqssdaSVLNLSDLLSDADLETNSLDNYLNVSTTEE-GDTAIKVDPNGNGNFDAPAQTIILEDVDLTAv 2349
Cdd:TIGR03661 1 DTITDFTLGE-------DKLDLSDLLSGEGVSSANLDQYLNVTTSGEdGNTVISVDSDGSAGSAAVTQTITLEGVDLSS- 72
|
90 100
....*....|....*....|
gi 1003952123 2350 fatnNSHDIVNQMIANGNLI 2369
Cdd:TIGR03661 73 ----TSADIINQLLDNNQLI 88
|
|
| DUF5801 |
pfam19116 |
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as ... |
338-509 |
2.43e-14 |
|
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as tandem repeats in a number of bacterial proteins.
Pssm-ID: 465976 [Multi-domain] Cd Length: 152 Bit Score: 72.66 E-value: 2.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 338 IQDDVP-IARAQLTNNEILLDETigmkvGDVDAANDDFNPTTTADPFNNTYGIpiglvqnanllDTSTSEmGGDYKNATm 416
Cdd:pfam19116 3 FEDDGPsITASAGEAPTLTVDET-----ALGTGGGLADATASFAGLFTSDFGA-----------DGAGST-GSTYSLSL- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 417 thlikITDAVSGL-QTTDGTPVNLFLEsNGDISGRAGDiGAPAVFAIRMNPNTGAITVAQYGSIKQFDTNSYDEAVDLT- 494
Cdd:pfam19116 65 -----SAGAASGLtDTATGQAILLFLE-GGVVVGRTAG-GGDVVFTVSVDAATGEVTLTQYRAVVHPDTSDPDDSVSLAa 137
|
170
....*....|....*
gi 1003952123 495 GRISVVVTAKDSDGD 509
Cdd:pfam19116 138 GLITLTATVTDGDGD 152
|
|
| DUF5801 |
pfam19116 |
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as ... |
704-849 |
1.84e-12 |
|
Domain of unknown function (DUF5801); This entry contains a presumed domain that is found as tandem repeats in a number of bacterial proteins.
Pssm-ID: 465976 [Multi-domain] Cd Length: 152 Bit Score: 67.27 E-value: 1.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 704 MRFEDDGPVAGTI-----SLVADEDNLprgnNDTASGDAAQSNLTGTLPVNFGADGAGSIDFQ--------GMHGLSAVI 770
Cdd:pfam19116 1 ISFEDDGPSITASageapTLTVDETAL----GTGGGLADATASFAGLFTSDFGADGAGSTGSTyslslsagAASGLTDTA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 771 GNDNITYNWNAstNTLTAYQTGGALgvnDVFKIVVNPTTGQYTFTLLAAINHHAVADNTE--GLVDPFVNLNYRVIDGDG 848
Cdd:pfam19116 77 TGQAILLFLEG--GVVVGRTAGGGD---VVFTVSVDAATGEVTLTQYRAVVHPDTSDPDDsvSLAAGLITLTATVTDGDG 151
|
.
gi 1003952123 849 D 849
Cdd:pfam19116 152 D 152
|
|
| Peptidase_M10_C |
pfam08548 |
Peptidase M10 serralysin C terminal; Serralysins are peptidases related to mammalian matrix ... |
1678-1750 |
4.95e-12 |
|
Peptidase M10 serralysin C terminal; Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.
Pssm-ID: 430067 [Multi-domain] Cd Length: 222 Bit Score: 67.78 E-value: 4.95e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1003952123 1678 GQEGNDVIDAGSGDDVIDAGSGDDVIVGGTGNDTLTGGSGADQFVFFRGHGSNnagTAPTDIITDFEVNIDKI 1750
Cdd:pfam08548 86 GGSGNDVLIGNDADNILKGGAGNDILYGGGGADQLWGGAGNDIFVYASAKDSL---TAAPDTIRDFVSGIDKI 155
|
|
| VWA_2 |
pfam13519 |
von Willebrand factor type A domain; |
1304-1410 |
2.56e-08 |
|
von Willebrand factor type A domain;
Pssm-ID: 463909 [Multi-domain] Cd Length: 103 Bit Score: 53.84 E-value: 2.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1304 LAFILDESGSMSQNFGGTTRLEVLKQAMTDILTELSNTpnasiTVHLVKFASVVNGTGTFeitGGGLQQALDFISGLQIQ 1383
Cdd:pfam13519 1 LVFVLDTSGSMRNGDYGPTRLEAAKDAVLALLKSLPGD-----RVGLVTFGDGPEVLIPL---TKDRAKILRALRRLEPK 72
|
90 100
....*....|....*....|....*..
gi 1003952123 1384 QGllaGTNYEAALGQTVQWFSSQSGTV 1410
Cdd:pfam13519 73 GG---GTNLAAALQLARAALKHRRKNQ 96
|
|
| T1SS_rpt_143 |
TIGR03660 |
T1SS-143 repeat domain; This model represents a domain of about 143 amino acids that may occur ... |
775-867 |
2.68e-08 |
|
T1SS-143 repeat domain; This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion. [Cellular processes, Pathogenesis]
Pssm-ID: 132699 [Multi-domain] Cd Length: 137 Bit Score: 54.60 E-value: 2.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 775 ITYNWNASTNTLTAYQtgGALGVNDVFKIVVNpTTGQYTFTLLAAINHHAVADNTEglvdpfVNLNYRVIDGDGDTAIGT 854
Cdd:TIGR03660 34 VTLSETSNADGNFTYT--ATAGGNPVFTLTLN-ADGSYEFTLEGPLDHAAGSDELT------LNFPIIATDFDGDTSSIT 104
|
90
....*....|...
gi 1003952123 855 LKVTIDDDIPKAI 867
Cdd:TIGR03660 105 LPVTIVDDVPTIT 117
|
|
| vWFA |
cd00198 |
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ... |
1302-1439 |
6.34e-08 |
|
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Pssm-ID: 238119 [Multi-domain] Cd Length: 161 Bit Score: 54.49 E-value: 6.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1302 ARLAFILDESGSMSQnfggtTRLEVLKQAMTDILTELSNTPNASiTVHLVKFASVVNGTGTFEiTGGGLQQALDFISGLQ 1381
Cdd:cd00198 1 ADIVFLLDVSGSMGG-----EKLDKAKEALKALVSSLSASPPGD-RVGLVTFGSNARVVLPLT-TDTDKADLLEAIDALK 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1003952123 1382 IQQGllAGTNYEAALGQTVQWFSSQSGTVDVQQTLFFTDGVPTFYMDGNSTEYTNLAR 1439
Cdd:cd00198 74 KGLG--GGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRK 129
|
|
| COG2931 |
COG2931 |
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and ... |
1661-1764 |
6.73e-08 |
|
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442175 [Multi-domain] Cd Length: 252 Bit Score: 56.07 E-value: 6.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1661 SGGHDIISGGQGDDRIYGQEGNDVIDAGSGDDVIDAGSGDDVIVGGTGNDTLTGGSGADQFVFFRGHGSNNAGTAPTDII 1740
Cdd:COG2931 127 GAGDDTLYGGAGNDTLTGGAGNDTLYGGAGNDTLYGGAGNDTLDGGAGNDTLTGGAGNDTLTGGAGNDTLDGGGGDDTLG 206
|
90 100
....*....|....*....|....
gi 1003952123 1741 TDFEVNIDKIVINANNIIGVSVSN 1764
Cdd:COG2931 207 GGGGDDGLDGGDGDDGLGGGGGDD 230
|
|
| COG2931 |
COG2931 |
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and ... |
1662-1759 |
1.61e-07 |
|
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442175 [Multi-domain] Cd Length: 252 Bit Score: 54.91 E-value: 1.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1662 GGHDIISGGQGDDRIYGQEGNDVIDAGSGDDVIDAGSGDDVIVGGTGNDTLTGGSGADQFVFFRGHGSNNAGTAPTDIIT 1741
Cdd:COG2931 137 AGNDTLTGGAGNDTLYGGAGNDTLYGGAGNDTLDGGAGNDTLTGGAGNDTLTGGAGNDTLDGGGGDDTLGGGGGDDGLDG 216
|
90
....*....|....*...
gi 1003952123 1742 DFEVNIDKIVINANNIIG 1759
Cdd:COG2931 217 GDGDDGLGGGGGDDTLGG 234
|
|
| HemolysinCabind |
pfam00353 |
RTX calcium-binding nonapeptide repeat (4 copies); |
1677-1712 |
3.20e-07 |
|
RTX calcium-binding nonapeptide repeat (4 copies);
Pssm-ID: 459777 [Multi-domain] Cd Length: 36 Bit Score: 48.59 E-value: 3.20e-07
10 20 30
....*....|....*....|....*....|....*.
gi 1003952123 1677 YGQEGNDVIDAGSGDDVIDAGSGDDVIVGGTGNDTL 1712
Cdd:pfam00353 1 YGGDGNDTLVGGAGNDTIYGGAGNDTLDGGAGNDTL 36
|
|
| COG2931 |
COG2931 |
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and ... |
1661-1764 |
3.80e-07 |
|
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442175 [Multi-domain] Cd Length: 252 Bit Score: 53.76 E-value: 3.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1661 SGGHDIISGGQGDDRIYGQEGNDVIDAGSGDDVIDAGSGDDVIVGGTGNDTLTGGSGADQFVFFRGHGSNNAGTAPTDII 1740
Cdd:COG2931 118 GDGNDTLTGGAGDDTLYGGAGNDTLTGGAGNDTLYGGAGNDTLYGGAGNDTLDGGAGNDTLTGGAGNDTLTGGAGNDTLD 197
|
90 100
....*....|....*....|....
gi 1003952123 1741 TDFEVNIDKIVINANNIIGVSVSN 1764
Cdd:COG2931 198 GGGGDDTLGGGGGDDGLDGGDGDD 221
|
|
| HemolysinCabind |
pfam00353 |
RTX calcium-binding nonapeptide repeat (4 copies); |
2225-2259 |
4.13e-07 |
|
RTX calcium-binding nonapeptide repeat (4 copies);
Pssm-ID: 459777 [Multi-domain] Cd Length: 36 Bit Score: 48.20 E-value: 4.13e-07
10 20 30
....*....|....*....|....*....|....*
gi 1003952123 2225 GGNGNDVLHGTTGNDFIRGGQGNDTMTGGGGVDTF 2259
Cdd:pfam00353 2 GGDGNDTLVGGAGNDTIYGGAGNDTLDGGAGNDTL 36
|
|
| HemolysinCabind |
pfam00353 |
RTX calcium-binding nonapeptide repeat (4 copies); |
1669-1703 |
7.51e-07 |
|
RTX calcium-binding nonapeptide repeat (4 copies);
Pssm-ID: 459777 [Multi-domain] Cd Length: 36 Bit Score: 47.43 E-value: 7.51e-07
10 20 30
....*....|....*....|....*....|....*
gi 1003952123 1669 GGQGDDRIYGQEGNDVIDAGSGDDVIDAGSGDDVI 1703
Cdd:pfam00353 2 GGDGNDTLVGGAGNDTIYGGAGNDTLDGGAGNDTL 36
|
|
| Peptidase_M10_C |
pfam08548 |
Peptidase M10 serralysin C terminal; Serralysins are peptidases related to mammalian matrix ... |
2225-2277 |
1.04e-06 |
|
Peptidase M10 serralysin C terminal; Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.
Pssm-ID: 430067 [Multi-domain] Cd Length: 222 Bit Score: 51.99 E-value: 1.04e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1003952123 2225 GGNGNDV---------LHGTTGNDFIRGGQGNDTMTGGGGVDTFFWLSGDDD--GGVDTITDFK 2277
Cdd:pfam08548 86 GGSGNDVligndadniLKGGAGNDILYGGGGADQLWGGAGNDIFVYASAKDSltAAPDTIRDFV 149
|
|
| COG2931 |
COG2931 |
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and ... |
1662-1761 |
1.43e-06 |
|
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442175 [Multi-domain] Cd Length: 252 Bit Score: 52.22 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1662 GGHDIISGGQGDDRIYGQEGNDVIDAGSGDDVIDAGSGDDVIVGGTGNDTLTGGSGADQFVFFRGHGSNNAGTAPTDIIT 1741
Cdd:COG2931 146 AGNDTLYGGAGNDTLYGGAGNDTLDGGAGNDTLTGGAGNDTLTGGAGNDTLDGGGGDDTLGGGGGDDGLDGGDGDDGLGG 225
|
90 100
....*....|....*....|
gi 1003952123 1742 DFEVNIDKIVINANNIIGVS 1761
Cdd:COG2931 226 GGGDDTLGGGGGGDGGGGGG 245
|
|
| TerY |
COG4245 |
Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown]; |
1306-1424 |
1.44e-06 |
|
Uncharacterized conserved protein YegL, contains vWA domain of TerY type [Function unknown];
Pssm-ID: 443387 [Multi-domain] Cd Length: 196 Bit Score: 51.08 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1306 FILDESGSMSqnfggTTRLEVLKQAMTDILTELSNTPNASITVHLvkfaSVVngtgTFeitGGGLQQALDF--ISGLQIQ 1383
Cdd:COG4245 10 LLLDTSGSMS-----GEPIEALNEGLQALIDELRQDPYALETVEV----SVI----TF---DGEAKVLLPLtdLEDFQPP 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1384 QgLLA--GTNYEAALG------QTVQWFSSQSGTVDVQQTLFF-TDGVPT 1424
Cdd:COG4245 74 D-LSAsgGTPLGAALEllldliERRVQKYTAEGKGDWRPVVFLiTDGEPT 122
|
|
| FhaB |
COG3210 |
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ... |
749-1604 |
3.84e-06 |
|
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442443 [Multi-domain] Cd Length: 1698 Bit Score: 52.46 E-value: 3.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 749 NFGADGAGSIDFQGMHGlSAVIGNDNITYNWNASTNTLTAYQTGGALGVNDVFKIVVNPTTGQYTFTLLAAINHHAVADN 828
Cdd:COG3210 803 TITAAGTTAINVTGSGG-TITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATAASITVGS 881
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 829 TEGLVDPFVNLNYRVIDGDGDTAIGTLKVTIDDDIPKAITPEEGFVTNQAGIVRTFDLDFDANIDNNVGADQLGTITFSG 908
Cdd:COG3210 882 GGVATSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASD 961
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 909 ITNGQVVTGTVDGVPNQTLTSGGSAIHYYVSGNNVVEGWINGGPGDVGSTIVFRTTLQPDMNYNASNDTYKFELFQPIST 988
Cdd:COG3210 962 GAGDTGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAG 1041
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 989 STNVSIANFSGVNATSREFIYLENASGPGEDILFSAYIRNDNGTFTDATVNTNPDGIGVNNQNMNDRENLRVDFVRNAST 1068
Cdd:COG3210 1042 GQNGVGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKV 1121
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1069 TGTNQNMTYEYDDHYLVNNFSFKIIQVTGNppTGSLEVWVRAYNADDDDPTDNTASSANNLAHQDALRDDPQVALTQILV 1148
Cdd:COG3210 1122 GGTTTVGATGTSTASTEAAGAGTLTGLVAV--SAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLK 1199
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1149 NGVPVTPTTVNASGGYLISGLNLNDTITIRSANGYDRVEIENPRSGAHGVSNSSLNNETFDIGLFSYNTIKTTPSEININ 1228
Cdd:COG3210 1200 GGDSTGGSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGA 1279
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1229 MGLSLTDSDGDKINSSIEINLAPSVFKVGENVDDTSSSNVPHRVGGDTGVIDGSGGADILVGDVGGVEVVGTTARLAFIL 1308
Cdd:COG3210 1280 TATGSTVDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGAT 1359
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1309 DESGSMSQNFGGTTRLEVLKQAMTDILTELSNTPNASITVHLVKFASVVNGTGTFEITGGGLQQALDFISGLQIQQGLLA 1388
Cdd:COG3210 1360 DSAAGAGSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSGTGVGNNGGVSGTTVAGTTGSSATTGTGGTGN 1439
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1389 GTNYEAALGQTVQWFSSQSGTVDVQQTLFFTDGVPTFYMDGNSTEYTNLARVYGNGSQTEEVLWENLFGEHAGGQATSDR 1468
Cdd:COG3210 1440 TTGTSVAGAGGGNADASAINTGNASSLGAGGSTAGNAVGGAVIGGTTTGGNGAGVAGATASNGGTSTGAGGTAGGTTAEV 1519
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1469 INNLTESDSRDLDGLQSYSIDTNNDGIFEIQSVNSRSSGTTQTTNDLVRSVADTFNEVQALQAYGPLRAVSIADNANVYL 1548
Cdd:COG3210 1520 AKASLEGGEGTYGGSSVAEAGTGGGILGAVSGAGSEGGAAGGVTGSVGVGGTDGAGGDTGGADDTGAQAPTAGNTATLTL 1599
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*.
gi 1003952123 1549 QEIDSTGQPYLADSPEVLQDILDELNPFNVLLAAGSDTIQANQEDDLIFGDVLFTD 1604
Cdd:COG3210 1600 SLAEGTNAEYGGTTNVTSGTAGNAGATGANSNTVVTTNGGEGVLALVAGGNTTNGT 1655
|
|
| HemolysinCabind |
pfam00353 |
RTX calcium-binding nonapeptide repeat (4 copies); |
1661-1694 |
7.10e-06 |
|
RTX calcium-binding nonapeptide repeat (4 copies);
Pssm-ID: 459777 [Multi-domain] Cd Length: 36 Bit Score: 44.74 E-value: 7.10e-06
10 20 30
....*....|....*....|....*....|....
gi 1003952123 1661 SGGHDIISGGQGDDRIYGQEGNDVIDAGSGDDVI 1694
Cdd:pfam00353 3 GDGNDTLVGGAGNDTIYGGAGNDTLDGGAGNDTL 36
|
|
| HemolysinCabind |
pfam00353 |
RTX calcium-binding nonapeptide repeat (4 copies); |
1686-1721 |
7.24e-06 |
|
RTX calcium-binding nonapeptide repeat (4 copies);
Pssm-ID: 459777 [Multi-domain] Cd Length: 36 Bit Score: 44.74 E-value: 7.24e-06
10 20 30
....*....|....*....|....*....|....*.
gi 1003952123 1686 DAGSGDDVIDAGSGDDVIVGGTGNDTLTGGSGADQF 1721
Cdd:pfam00353 1 YGGDGNDTLVGGAGNDTIYGGAGNDTLDGGAGNDTL 36
|
|
| COG2931 |
COG2931 |
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and ... |
1661-1764 |
1.15e-05 |
|
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442175 [Multi-domain] Cd Length: 252 Bit Score: 49.13 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1661 SGGHDIISGGQGDDRIYGQEGNDVIDAGSGDDVIDAGSGDDVIVGGTGNDTLTGGSGADQFVFFRGHGSNNAGTAPTDII 1740
Cdd:COG2931 109 GGGNDTLTGGDGNDTLTGGAGDDTLYGGAGNDTLTGGAGNDTLYGGAGNDTLYGGAGNDTLDGGAGNDTLTGGAGNDTLT 188
|
90 100
....*....|....*....|....
gi 1003952123 1741 TDFEVNIDKIVINANNIIGVSVSN 1764
Cdd:COG2931 189 GGAGNDTLDGGGGDDTLGGGGGDD 212
|
|
| YfbK |
COG2304 |
Secreted protein containing bacterial Ig-like domain and vWFA domain [General function ... |
1304-1424 |
4.52e-05 |
|
Secreted protein containing bacterial Ig-like domain and vWFA domain [General function prediction only];
Pssm-ID: 441879 [Multi-domain] Cd Length: 289 Bit Score: 47.79 E-value: 4.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1304 LAFILDESGSMSQNfggttRLEVLKQAMTDILTELsntpNASITVHLVKFAS----VVNGTgtfeiTGGGLQQALDFISG 1379
Cdd:COG2304 94 LVFVIDVSGSMSGD-----KLELAKEAAKLLVDQL----RPGDRVSIVTFAGdarvLLPPT-----PATDRAKILAAIDR 159
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1003952123 1380 LQiqqgllAG--TNYEAALGQTVQWFSSQSGTVDVQQTLFFTDGVPT 1424
Cdd:COG2304 160 LQ------AGggTALGAGLELAYELARKHFIPGRVNRVILLTDGDAN 200
|
|
| COG2931 |
COG2931 |
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and ... |
1662-1759 |
1.34e-04 |
|
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442175 [Multi-domain] Cd Length: 252 Bit Score: 46.05 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1662 GGHDIISGGQGDDRIYGQEGNDVIDAGSGDDVIDAGSGDDVIVGGTGNDTLTGGSGADQFVFFRGHGSNNAGTAPTDIIT 1741
Cdd:COG2931 155 AGNDTLYGGAGNDTLDGGAGNDTLTGGAGNDTLTGGAGNDTLDGGGGDDTLGGGGGDDGLDGGDGDDGLGGGGGDDTLGG 234
|
90
....*....|....*...
gi 1003952123 1742 DFEVNIDKIVINANNIIG 1759
Cdd:COG2931 235 GGGGDGGGGGGGDDGLGG 252
|
|
| AidA |
COG3468 |
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular ... |
536-981 |
1.64e-04 |
|
Autotransporter adhesin AidA [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442691 [Multi-domain] Cd Length: 846 Bit Score: 47.25 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 536 AGAALTLDETKGVKAGDANANDEAASAEANDIGYAKLVGSDLFTLTKDAGSDGEQSTLFKLLVSAPSSGLVDTATNQAIV 615
Cdd:COG3468 8 GATGLGGGGTGGGGGLGGTGGGNAGLGIGNGGGGGAASGSGAGGVAGNGGGGGGGAGGGGGGAGSGGGLAGAGSGGTGGN 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 616 LSANAGGTEVLGKNTNGDVVFKVLLTASNGDVEVFQYRAIKHENASDHDESGAGGIIERIQAGSLKLEVTLTDKDGDSAk 695
Cdd:COG3468 88 STGGGGGNSGTGGTGGGGGGGGSGNGGGGGGGGGGGGTGGGGGGGTGSAGGGGGGGGGGTGVGGTGAAAAGGGTGSGGG- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 696 ddldlgqmmrfedDGPVAGTISLVADEDNLPRGNNDTASGDAAQSNLTGTLPVNFGADGAGSIDFQGMHGLSAVIGNDNI 775
Cdd:COG3468 167 -------------GSGGGGGAGGGGGGGAGGSGGAGSTGSGAGGGGGGSGGGGGAAGTGGGGGGGGGAGGATGGAGSGGN 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 776 TYNWNASTNTLTAYQTGGALGVNDVFKIVVNPTTGQYTFTLLAAINHHAVADNTEGLVDPFVNLNYRVIDGDGDTAIGTL 855
Cdd:COG3468 234 TGGGVGGGGGSAGGTGGGGLTGGGAAGTGGGGGGTGTGSGGGGGGGANGGGSGGGGGASGTGGGGTASTGGGGGGGGGNG 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 856 KVTIDDDIPKAITPEEGFVTNQAGIVRTFDLDFDANIDNNVGADQLGTITFSGITNGQVVTGTVDGVPNQTLTSGGSAIH 935
Cdd:COG3468 314 GGGGGGSNAGGGSGGGGGGGGGGGGGGTTLNGAGSAGGGTGAALAGTGGSGSGGGGGGGSGGGGGAGGGGANTGSDGVGT 393
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 1003952123 936 YYVSGNNVVEGWINGGPGDVGSTIVFRTTLQPDMNYNASNDTYKFE 981
Cdd:COG3468 394 GLTTGGTGNNGGGGVGGGGGGGLTLTGGTLTVNGNYTGNNGTLVLN 439
|
|
| COG2931 |
COG2931 |
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and ... |
1568-1722 |
2.56e-04 |
|
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442175 [Multi-domain] Cd Length: 252 Bit Score: 45.28 E-value: 2.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1568 DILDELNPFNVLLAAGSDTIQANQEDDLIFGDVLFTDKLAEDEGLDLPKGSGWAVFEELEANHGWSRQDTLDYIRNHADE 1647
Cdd:COG2931 7 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDGGGGGGGGGGGGGGGGLDGGGGGGGGDGGGGGGGDD 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1003952123 1648 LGRETVLSSGSKRSGGHDIISGGQGDDRIYGQEGNDVIDAGSGDDVIDAGSGDDVIVGGTGNDTLTGGSGADQFV 1722
Cdd:COG2931 87 TDGGGDGGDGGGGGTGDDTGDGGGGNDTLTGGDGNDTLTGGAGDDTLYGGAGNDTLTGGAGNDTLYGGAGNDTLY 161
|
|
| ChlD |
COG1240 |
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ... |
1302-1424 |
3.73e-04 |
|
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];
Pssm-ID: 440853 [Multi-domain] Cd Length: 262 Bit Score: 44.54 E-value: 3.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1302 ARLAFILDESGSMsqnfGGTTRLEVLKQAMTDILTELSNTpnasITVHLVKFAS----VVNGTGTfeitgggLQQALDFI 1377
Cdd:COG1240 93 RDVVLVVDASGSM----AAENRLEAAKGALLDFLDDYRPR----DRVGLVAFGGeaevLLPLTRD-------REALKRAL 157
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1003952123 1378 SGLQIQQgllaGTNYEAALGQTVQWFSSQSGTVDVqQTLFFTDGVPT 1424
Cdd:COG1240 158 DELPPGG----GTPLGDALALALELLKRADPARRK-VIVLLTDGRDN 199
|
|
| HemolysinCabind |
pfam00353 |
RTX calcium-binding nonapeptide repeat (4 copies); |
2233-2266 |
5.13e-04 |
|
RTX calcium-binding nonapeptide repeat (4 copies);
Pssm-ID: 459777 [Multi-domain] Cd Length: 36 Bit Score: 39.34 E-value: 5.13e-04
10 20 30
....*....|....*....|....*....|....
gi 1003952123 2233 HGTTGNDFIRGGQGNDTMTGGGGVDTFFWLSGDD 2266
Cdd:pfam00353 1 YGGDGNDTLVGGAGNDTIYGGAGNDTLDGGAGND 34
|
|
| RhsA |
COG3209 |
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ... |
313-1082 |
6.42e-04 |
|
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only];
Pssm-ID: 442442 [Multi-domain] Cd Length: 1103 Bit Score: 45.13 E-value: 6.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 313 VTFTRTIDGSVLESRTLPANAVVAGIQDDVPIARAQLTNNEILLDETIGMKVGDVDAANDDFNPTTTADPFNNTYGIPIG 392
Cdd:COG3209 1 ETSLGLVGGTTGASSTLLAATNAGGGTAVTNAGSTVLLAKGGLSTAAAAGGAATLTARSASTTDVVGTLTGAGGTSAGGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 393 LVQNANLLDTSTSEMGGDYKNATMTHLIKITDAVSGLQTTDGTPVNLFLESNGDISGRAGDIGAPAVFAIRMNPNTGAIT 472
Cdd:COG3209 81 TALGDASAAGGGYVGGAAAGGGATLTGLAAATASAGRLVSTGAGAGGTVTAATGGTLGATAGSATTGSTDGGRGGVAVTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 473 VAQYGSIKQFDTNSYDEAVDLTGRISVVVTAKDSDGDVSNAEIPIGQLIIFEDDGPVVDmAVKAGAALTLDETKGVKAGD 552
Cdd:COG3209 161 LAGGGASAYGLTLGGAAAGPATGVGTGAVTLATGLAGSALLALGSGAILGGLAGAYSGS-ATTATGTALGTPASVAATVT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 553 ANANDEAASAEANDIGYAKLVGSDLFTLTKDAGSDGEQSTLFKLLVSAPSSGLVDTATNQAIVLSANAGGTEVLGKNTNG 632
Cdd:COG3209 240 GSATGAAGAGAAVATAATTLGGTTGAGTGASGAGLDASTGTGGAGGSNAAATAGGLGGAGLGSGGAGGGGTAGGTTTAAG 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 633 DVVFKVLLTASNGDVEVFQYRAIKHENASDHDESGAGGIIERIQAGSLKLEVTLTDKDGDSAKDDLDLGQMMRFEDDGPV 712
Cdd:COG3209 320 TTGTAAVSGAADAGTTTTTGTGTGGTTTTVGGGGSLTLGGYGAAGGLTTSVGAGGGGSTSGSTTTVGGGGTATGSGGGSS 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 713 AGTISLVADEDNLPRGNNDTASGDAAQSNLTGTLPVNFGADGAGSIDFQGMHGLSAVIGNDNITYNWNASTNTLTAYQTG 792
Cdd:COG3209 400 TTGVGAGTTTTSTTGGDGGPATAAGALTAGGTATGTGTGGGGTTAGTDATTTTGGAGASGTLTTTGGAATGATTGGGTEA 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 793 GALGVNDVFKIVVNPTTGQYTFTLLAAINHHAVADNTEGLVDPFVNLNYRVIDGDGDTAIGTLKVTIDDDIPKAITPEEG 872
Cdd:COG3209 480 GTGGGTLTSGSAGATTLGTDTTLDDTLGGTTTTTAGARGLVVTTGTTLTLGTTTTATLSATDATGTGDTTTTGTVGTGTS 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 873 FVTNQAGIVRTFDLDFDANIDNNVGADQLGTITFSGITNGQVVTGTVDGVPNQTLTSGGSAIHYYVSGNNVVEGWINGGP 952
Cdd:COG3209 560 TGTGGTGTVTTTGDGTGGASTTTGTTGGTATTTTVTTTTTTSTAGTTTTTTSGYTRAGLTLTLGTGTASGLERATASTGS 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 953 GDVGSTIVFRTTLQPDMNYNASNDTYKFELFQPISTSTNVSianfSGVNATSREFIYLENASGPGEDILFSAYIRNDNGT 1032
Cdd:COG3209 640 TTGGTTGTGVTTTGTTTTRATGTTGTGTGVTAGLTTLATGG----TTVGGGTGTTSTATTGATTGGTETGTTVTTLAGGT 715
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1033 FTDATVNTNPDGIGVNNQNMNDRENLRVDFVRNASTTGTNQNMTYEYDDH 1082
Cdd:COG3209 716 TTRLGTTTTGGGGGTTTDGTGTGGTTGTLTTTSTTTTTTAGALTYTYDAL 765
|
|
| HemolysinCabind |
pfam00353 |
RTX calcium-binding nonapeptide repeat (4 copies); |
2223-2250 |
9.44e-04 |
|
RTX calcium-binding nonapeptide repeat (4 copies);
Pssm-ID: 459777 [Multi-domain] Cd Length: 36 Bit Score: 38.57 E-value: 9.44e-04
10 20
....*....|....*....|....*...
gi 1003952123 2223 LNGGNGNDVLHGTTGNDFIRGGQGNDTM 2250
Cdd:pfam00353 9 LVGGAGNDTIYGGAGNDTLDGGAGNDTL 36
|
|
| retention_LapA |
NF033682 |
retention module-containing protein; The retention module, as described for the giant adhesin ... |
5-138 |
1.18e-03 |
|
retention module-containing protein; The retention module, as described for the giant adhesin LapA of Pseudomonas fluorescens and for an ice-binding giant adhesin of an Antarctic bacterium, appears at the N-terminus of a number of very large repetitive proteins, many of which have C-terminal regions that make them substrates for type I secretion systems.
Pssm-ID: 468140 Cd Length: 145 Bit Score: 41.47 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 5 SVIGIVRAVNGLLEKVNAQGQASLVKSGARLQEGDVL-TLLSGEAYIQFIHGFPEALALGKPVNLYGVSPALQYGVEELN 83
Cdd:NF033682 1 TQVAVVKAVSGTVFAVNADGSVRVLKVGDTLQAGEIViTGNGAAVELQLADGSTLTLGENCVACVTEDNGLIEFDAEEAA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1003952123 84 E--------QLVQEALAKGIDPSVILDvlGSAAAGAEAVGSGGDAFIM-DPLFGFGHVTAGYPT 138
Cdd:NF033682 81 AasfddpdiAAIQAAILAGADPTELLE--ATAAGLAGGAGGAGGGFVTiDRNGDEVLPSTGFPT 142
|
|
| VWA |
smart00327 |
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ... |
1304-1428 |
1.67e-03 |
|
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Pssm-ID: 214621 [Multi-domain] Cd Length: 175 Bit Score: 41.67 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 1304 LAFILDESGSMSQNfggttRLEVLKQAMTDILTELSNTPNaSITVHLVKFASVVngtgTFEITGGGLQQALDFISGLQ-I 1382
Cdd:smart00327 2 VVFLLDGSGSMGGN-----RFELAKEFVLKLVEQLDIGPD-GDRVGLVTFSDDA----RVLFPLNDSRSKDALLEALAsL 71
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1003952123 1383 QQGLLAGTNYEAALGQTVQ-WFSSQSGT-VDVQQTL-FFTDGVPTFYMD 1428
Cdd:smart00327 72 SYKLGGGTNLGAALQYALEnLFSKSAGSrRGAPKVViLITDGESNDGPK 120
|
|
| COG2931 |
COG2931 |
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and ... |
2223-2322 |
1.77e-03 |
|
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442175 [Multi-domain] Cd Length: 252 Bit Score: 42.59 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 2223 LNGGNGNDVLHGTTGNDFIRGGQGNDTMTGGGGVDTFFWLSGDDDGGVDTITDFKANPVDQSSDASVLNLSDLLSDADLE 2302
Cdd:COG2931 151 LYGGAGNDTLYGGAGNDTLDGGAGNDTLTGGAGNDTLTGGAGNDTLDGGGGDDTLGGGGGDDGLDGGDGDDGLGGGGGDD 230
|
90 100
....*....|....*....|
gi 1003952123 2303 TNSLDNYLNVSTTEEGDTAI 2322
Cdd:COG2931 231 TLGGGGGGDGGGGGGGDDGL 250
|
|
| COG2931 |
COG2931 |
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and ... |
2217-2333 |
6.39e-03 |
|
Ca2+-binding protein, RTX toxin-related [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442175 [Multi-domain] Cd Length: 252 Bit Score: 40.66 E-value: 6.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003952123 2217 LANNPELNGGNGNDVLHGTTGNDFIRGGQGNDTMTGGGGVDTFFWLSGDDDGGVDTITDFKANPVDQSSDASVLNLSDLL 2296
Cdd:COG2931 136 GAGNDTLTGGAGNDTLYGGAGNDTLYGGAGNDTLDGGAGNDTLTGGAGNDTLTGGAGNDTLDGGGGDDTLGGGGGDDGLD 215
|
90 100 110
....*....|....*....|....*....|....*..
gi 1003952123 2297 SDADLETNSLDNYLNVSTTEEGDTAIKVDPNGNGNFD 2333
Cdd:COG2931 216 GGDGDDGLGGGGGDDTLGGGGGGDGGGGGGGDDGLGG 252
|
|
| |
