|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1-1102 |
0e+00 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 1677.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 1 MSLRVYLRTALLGLCLSLSFAATAAEAPT--TASIQNSLDKIAERKLPEADQKALQQVLEQTLSQLASKEDSEKKLVALK 78
Cdd:PRK11281 7 FVFRAFIAFLFLLLCLSSAFARAASNGDLptEADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 79 QQLAGAPKETSDSQKELARLKESKPQPVAQRYATLSVPQLEQMLSERNTQQGELQKALSEANSLIINSQTRPERAQAEIS 158
Cdd:PRK11281 87 QQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALY 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 159 NSQARAQQINNILKTGKDGGKSINADQRNQLNAELASLNALTLLRRQELAGNSLLQDLGNARHDLLIERATRLEQEIQDL 238
Cdd:PRK11281 167 ANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 239 QTLINDKRLAQSQEAVTQ--QSIEAQKAGGSSLLATESALNLKLSDYLLKSTDRLNELTQQNLRTKQQLDSLTQADQALD 316
Cdd:PRK11281 247 QEAINSKRLTLSEKTVQEaqSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIK 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 317 EQINVLKGSLLLSKILYKQKQTLPHLKVDRDLADQIADTRLYQFEVNQQREQMSSPVTYVDKLLAAQPQEaVTPQLRKAL 396
Cdd:PRK11281 327 EQISVLKGSLLLSRILYQQQQALPSADLIEGLADRIADLRLEQFEINQQRDALFQPDAYIDKLEAGHKSE-VTDEVRDAL 405
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 397 LEVAINRSDLLERLNRELSALLNESITLQLNQKQLLGTAQSLRTTLDEQMFWIPSNKPLDWDWLSYVPERLADQVANLPW 476
Cdd:PRK11281 406 LQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQQIFWVNSNKPMDLDWLKAFPQALKDQFKSLKI 485
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 477 GSGLKELADGLSQRPLLFLPLLLVIGALLWRRQYLYQRLGKVHQDIGHFRRDSQWHTPQAILINILLAMPVSLGLALCSY 556
Cdd:PRK11281 486 TVSFSNLWDGLFIALLLFLPLLLIAGLIRWRKKWIKARLQKLAADIGTLKRDSQLHTPKAILITLLLALPVTLIFLAVGL 565
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 557 ALQIDARGQNANLGAALWQLAQAWLVFYTAYRILAPGGVAEIHFRWHKPQVEFLRGWVRRLGTVVLALVGVVAVAEHQPS 636
Cdd:PRK11281 566 ILLTDAFNQSELLWSWSLKLALFWLVFATCYRVLRPNGVAERHFGMPKEQVSHFRRQIVRLSLALLPLLFWSVVAELSPL 645
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 637 ALADDVLGIGVVLTCYALMAWLLSRLLLSSPAHRDTSLFRRAVGVAFTALPIALFVAVCFGYYYTALKLTDRLIYTLYLL 716
Cdd:PRK11281 646 GLADDVIGQAVIIIALALIAFLVWPLCRESWRDKESHTLRLVVRTVLTIAPIALIVLVVLGYYYTALRLIGRLIETLYLL 725
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 717 LFWLVIEAAFVRGLSVAARRLAYQRALSKR-AAAKEGLDGEVITEEPTLDIEQVNQQSLRLIRLALLGGFIAGLYWVWAD 795
Cdd:PRK11281 726 IIWNLLYQTVLRGLSVAARRLAYRRALAKRqNLVKEGAEGAEPVEEPTLALEQVNQQSLRLTDLLLFALFFVMFYWVWSD 805
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 796 LISVFAYLNNFVLYEYTSGTGAAASMVPISLGDLLGALVIVGITFALAGNLPGLLEVLVLSRLNLAQGSAYATTTLLSYT 875
Cdd:PRK11281 806 LITVFSYLDSITLWHYTTTTAGGAVVESITLGNLLFALIILVVTYVLVRNLPGLLEVLVLSRLNLRQGTSYAITTLLTYI 885
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 876 IVGVGIVSTLSTLGVSWDKLQWLVAALSVGLGFGMQEIFANFISGIMILFERPVRIGDTITIGNLSGTVSKIRIRATTIT 955
Cdd:PRK11281 886 IIAVGAVTAFSTLGVSWDKLQWLVAALSVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTIGTFSGTVSKIRIRATTIT 965
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 956 DFDRKDIIVPNKTFITGQLINWSLTDTVTRVTLKLGIDYGSDLDLVRDLLLKGAHENPRVLKDPEPIVYFLNFGESSLDH 1035
Cdd:PRK11281 966 DFDRKEVIVPNKAFVTERLINWSLSDTVTRVVIKVGVAYGSDLEKVRELLLQAATENPRVMKEPEPQVFFLNFGASTLDH 1045
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 983312641 1036 ELRMHVRDLGDRNPTLDEINRYINREFKAHNIKISVRQVEVFLMDQKDGKQQLIPLEQPKPDGTAPA 1102
Cdd:PRK11281 1046 ELRLYVRELGDRSPTVDELNRRIDRLFRENDINIAFNQLDVFLKNQKGDEVVEVKRDLKGDDPTPAV 1112
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
11-1069 |
1.94e-122 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 403.28 E-value: 1.94e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 11 LLGLCLSLSFAATAAEAPTTasIQNSLDKIAERKLPeaDQKALQQVLEQTLSQLASKEDSEKKLVALKQQLAGAPKETSD 90
Cdd:PRK10929 8 LMAWLLSWGAYAATAPDEKQ--ITQELEQAKAAKTP--AQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPKLSAE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 91 SQKELARLKEsKPQPVAqryATLSVPQLEQMLSERNTQ--------QGELQKA--LSEANSLIINSQTRPERAQAEISNs 160
Cdd:PRK10929 84 LRQQLNNERD-EPRSVP---PNMSTDALEQEILQVSSQlleksrqaQQEQDRAreISDSLSQLPQQQTEARRQLNEIER- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 161 qaRAQQINNilktgkdGGKSINADQRNQLNAELASLNALT-LLRRQELAGNSLlQDLGNARHDLLIERATRLEQEIQDLQ 239
Cdd:PRK10929 159 --RLQTLGT-------PNTPLAQAQLTALQAESAALKALVdELELAQLSANNR-QELARLRSELAKKRSQQLDAYLQALR 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 240 TLINDKRLAQSQEAVTQQSIEAQKAGG-SSLLATESALNLKLSDYLLKSTDRLNELTQQNLRTKQQLDSLTQADQALDEQ 318
Cdd:PRK10929 229 NQLNSQRQREAERALESTELLAEQSGDlPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQ 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 319 INVLKGSLLLSKILYKQKQTLPHL----KVDRDLAdQIADTRL-YQFEVNQQREQMSSPVTYVDKLLAAQpQEAVTPQLR 393
Cdd:PRK10929 309 SQWLGVSNALGEALRAQVARLPEMpkpqQLDTEMA-QLRVQRLrYEDLLNKQPQLRQIRQADGQPLTAEQ-NRILDAQLR 386
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 394 kallevaiNRSDLLERLNRELSALLNESITLQLNQKQLLGTAQSLRTTLDEQMFWIPSNKPLDWDWlsyvPERLADQVAN 473
Cdd:PRK10929 387 --------TQRELLNSLLSGGDTLILELTKLKVANSQLEDALKEVNEATHRYLFWVADVSPISLSY----PLEIAQDLRR 454
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 474 LPWGSGLKELADGLSQRPLLFLPLLLVIGALLW-------RRQYL------YQRLGKVHQDigHFrrdsqWHTPQAILIN 540
Cdd:PRK10929 455 LLSLDTFSQLGKASVMMLTSKETLLPLFGALLLvgfsissRRHYHaflersSSRVGKVTQD--HF-----SLTLRTVFWS 527
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 541 ILLAMPVSLGLALCSYALQidargqNAnlgaalWQ--LAQA------------WLVFYTAyRILAPGGVAEIHFRWHKPQ 606
Cdd:PRK10929 528 ILVASPLPVLWAALGYGLQ------NA------WPypLAVAigdgvtatvpllWVFMICA-TFARPNGLFIAHFGWPRER 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 607 VE-FLRGWVRRLGTVVLALVGVVAVAEHQPSALADDVLGIGVVLTCYALMAWLLSRLLLSSPAHRDT-----SLFRRAVG 680
Cdd:PRK10929 595 VArAMRYYLLSIGLIVPLIMALITFDNLNDREFSGTLGRLCFILLCGALSLVTLSLKRAGIPLYLDKegsgdNIINHALW 674
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 681 VAFTALPIALFVAVCFGYYYTALKLTDRLIYTLYLLLFWLVIEAAFVRGLSVAARRLAYQRALSKRA------------- 747
Cdd:PRK10929 675 NLLIGAPLVAALASALGYLATAQALLARLETSVAIWFLLLVVYHIIRRWMLIQRRRIAFDRAKQRRAeilaqrargeeea 754
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 748 AAKEGLDGEVITEEPTLDIEQVNQQSLRLIRLALLGGFIAGLYWVWADLISVFAYLNNFVLYEYTSGTGAAASMVPISLG 827
Cdd:PRK10929 755 HHSSSPEGAIEVEEPVIDLDAISAQSLRLVRSILTLIALLSVIVLWSEIHSAFGFLENISLWDVTSTVQGVESLQPITLG 834
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 828 DLLGALVIVGITFALAGNLPGLLEVLVLSRLNLAQGSAYATTTLLSYTIVGVGIVSTLSTLGVSWDKLQWLVAALSVGLG 907
Cdd:PRK10929 835 SVLIAILVFIITTQLVRNLPALLELALLQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLG 914
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 908 FGMQEIFANFISGIMILFERPVRIGDTITIGNLSGTVSKIRIRATTITDFDRKDIIVPNKTFITGQLINWSLTDTVTRVT 987
Cdd:PRK10929 915 FGLQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSVTRVV 994
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 988 LKLGIDYGSDLDLVRDLLLKGAHENPRVLKDPEPIVYFLNFGESSLDHELRMHVRDLGDRNPTLDEINRYINREFKAHNI 1067
Cdd:PRK10929 995 LTIPAPADANSEEVTEILLTAARRCSLVLDNPAPEVFLVDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFREHGI 1074
|
..
gi 983312641 1068 KI 1069
Cdd:PRK10929 1075 DM 1076
|
|
| MscK |
COG3264 |
Small-conductance mechanosensitive channel MscK [Cell wall/membrane/envelope biogenesis]; |
822-1082 |
6.17e-97 |
|
Small-conductance mechanosensitive channel MscK [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442495 [Multi-domain] Cd Length: 281 Bit Score: 309.05 E-value: 6.17e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 822 VPISLGDLLGALVIVGITFALAGNLPGLLEVLVLSRLNLAQGSAYATTTLLSYTIVGVGIVSTLSTLGVSWDKLQWLVAA 901
Cdd:COG3264 16 ISISLPNLLLALLILVVTYLLARLLSRLLERRLLRRTRLDPGLRYLISKLIRYLIIVLGLLIALSALGIDLTALAALAGA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 902 LSVGLGFGMQEIFANFISGIMILFERPVRIGDTITIGNLSGTVSKIRIRATTITDFDRKDIIVPNKTFITGQLINWSLTD 981
Cdd:COG3264 96 LGVGIGFGLQDIVSNFISGLILLFERPFRVGDWIEIGGTEGTVEEIGLRSTRIRTFDGEEVIIPNSELITNPVINWSLSD 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 982 TVTRVTLKLGIDYGSDLDLVRDLLLKGAHENPRVLKDPEPIVYFLNFGESSLDHELRMHVRDLGDRNPTLDEINRYINRE 1061
Cdd:COG3264 176 PRRRVEIPVGVAYGSDLEKVRELLLEAAREHPRVLKDPAPSVLFTEFGDSSVNFELRFWVNDPRDRLRVRSDLNEAIKKA 255
|
250 260
....*....|....*....|.
gi 983312641 1062 FKAHNIKISVRQVEVFLMDQK 1082
Cdd:COG3264 256 FREEGIEIPFPQRDVHLRNPP 276
|
|
| MscS_TM |
pfam12794 |
Mechanosensitive ion channel inner membrane domain 1; The small mechanosensitive channel, MscS, ... |
500-808 |
2.03e-96 |
|
Mechanosensitive ion channel inner membrane domain 1; The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this domain is one of the inner membrane domains.
Pssm-ID: 432789 [Multi-domain] Cd Length: 332 Bit Score: 309.53 E-value: 2.03e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 500 VIGALLWRRQYLYQRLGKVHQDIGHFRRDSQWHTPQAILINILLAMPVSLGLALCSYALQIDARGQNAN--LGAALWQLA 577
Cdd:pfam12794 6 VAGLLLWLRRRLKRRLERLAERVGKVTQDSFLHTLRALLLTLLLALPLPLLLAALGWLLQLSGWATPFSvaLGAALLALA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 578 QAWLVFYTAYRILAPGGVAEIHFRWHKPQVEFLRGWVRRLGTVVLALVGVVAVAEHQPSALADDVLGIGVVLTCYALMAW 657
Cdd:pfam12794 86 LALLVFEFFRRLLRPDGLAIRHFGWPEERVQRLRRQLRWLIWVLVPLVFVLGLAEALPDSLARDVLGRLAFIILMLLLAV 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 658 -------LLSRLLLSSPAHRDTSLFRRAVGVAFTALPIALFVAVCFGYYYTALKLTDRLIYTLYLLLFWLVIEAAFVRGL 730
Cdd:pfam12794 166 flwrllrPGRGLYASHLGEGPNSRLRRLWWPLLVLAPLALAVLALLGYYYTALQLLGRLIDSLYLLLGWLLVYALALRWL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 731 SVAARRLAYQRALSKRAAA-----KEGLDGE----VITEEPTLDIEQVNQQSLRLIRLALLGGFIAGLYWVWADLISVFA 801
Cdd:pfam12794 246 LVARRRLAYRRAKERRAEAlaqraKEGEEGAepseSSVEEPELDLETISAQSLRLLRLLLLLAFLVGLYWIWSDLLPAFS 325
|
....*..
gi 983312641 802 YLNNFVL 808
Cdd:pfam12794 326 YLDNITL 332
|
|
| MscS_porin |
pfam12795 |
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part ... |
36-268 |
8.16e-61 |
|
Mechanosensitive ion channel porin domain; The small mechanosensitive channel, MscS, is a part of the turgor-driven solute efflux system that protects bacteria from lysis in the event of osmotic shock. The MscS protein alone is sufficient to form a functional mechanosensitive channel gated directly by tension in the lipid bilayer. The MscS proteins are heptamers of three transmembrane subunits with seven converging M3 domains, and this MscS_porin is towards the N-terminal of the molecules. The high concentration of negative charges at the extracellular entrance of the pore helps select the cations for efflux.
Pssm-ID: 432790 [Multi-domain] Cd Length: 238 Bit Score: 207.92 E-value: 8.16e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 36 SLDKIAERKLPEADQKALQQVLEQTLSQLASKEDSEKKLVALKQQLAGAPKETSDSQKELARLKESKPQPVAQRYATLSV 115
Cdd:pfam12795 1 KLDELEKAKLDEAAKKKLLQDLQQALSLLDKIDASKQRAAAYQKALDDAPAELRELRQELAALQAKAEAAPKEILASLSL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 116 PQLEQMLSERNTQQGELQKALSEANSLIINSQTRPERAQAEISNSQARAQQINNILKTGKDGGKSINADQRNQLNAELAS 195
Cdd:pfam12795 81 EELEQRLLQTSAQLQELQNQLAQLNSQLIELQTRPERAQQQLSEARQRLQQIRNRLNGPAPPGEPLSEAQRWALQAELAA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 983312641 196 LNALTLLRRQELAGNSLLQDLGNARHDLLIERATRLEQEIQDLQTLINDKRLAQSQEAVTQQSIEAQKAGGSS 268
Cdd:pfam12795 161 LKAQIDMLEQELLSNNNRQDLLKARRDLLTLRIQRLEQQLQALQELLNEKRLQEAEQAVAQTEQLAEEAAGDH 233
|
|
| MS_channel |
pfam00924 |
Mechanosensitive ion channel; Two members of this protein family: Swiss:Q57634 and Swiss: ... |
869-1068 |
7.97e-58 |
|
Mechanosensitive ion channel; Two members of this protein family: Swiss:Q57634 and Swiss:Q58543 of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.
Pssm-ID: 459999 [Multi-domain] Cd Length: 203 Bit Score: 197.82 E-value: 7.97e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 869 TTLLSYTIVGVGIVSTLSTLGVSWDKLQWLVAALSVGLGFGMQEIFANFISGIMILFERPVRIGDTITIGNLSGTVSKIR 948
Cdd:pfam00924 1 KKILKYLIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILFEKPFKIGDWIEIGDIEGTVEDIG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 949 IRATTITDFDRKDIIVPNKTFITGQLINWSLTDTVtRVTLKLGIDYGSDLDLV---RDLLLKGAHENPRVLKDPEPIVYF 1025
Cdd:pfam00924 81 LRTTTIRTFDGRLVTIPNSSILTSNIINYSRSPTR-RVELSIGVAYSSDPDKLekvIEILKEAAYEHPLVLKDPEPPVVF 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 983312641 1026 LNFGESSLDHELRMHVRDL-GDRNPTLDEINRYINREFKAHNIK 1068
Cdd:pfam00924 160 GEFGDSSLNFELRVWVKTLpGEYFNVRSELNLRIKKALEENGIE 203
|
|
| MscS |
COG0668 |
Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis]; |
826-1082 |
2.32e-46 |
|
Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440432 [Multi-domain] Cd Length: 276 Bit Score: 167.75 E-value: 2.32e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 826 LGDLLGALVIVGITFALAGnlpgLLEVLVLSRLNLAQGS---AYATTTLLSYTIVGVGIVSTLSTLGVSwdkLQWLVAAL 902
Cdd:COG0668 24 LPKLLLALLILLIGWLLIR----LLRRLIRRLLRRARRDrtlLPLLRNILKILIVIIAILLILSILGVN---ITSLLAGL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 903 SVG---LGFGMQEIFANFISGIMILFERPVRIGDTITIGNLSGTVSKIRIRATTITDFDRKDIIVPNKTFITGQLINWSL 979
Cdd:COG0668 97 GAAglaIGLAAQDLLSNFIAGIFILLERPFRVGDWIEVGGVEGTVEEIGLRSTRLRTLDGRLVTIPNSKILSSPITNYSR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 980 TDTVtRVTLKLGIDYGSDLDLVRDLLLKGAHENPRVLKDPEpIVYFLNFGESSLDHELRMHVRDlGDRNPTLDEINRYIN 1059
Cdd:COG0668 177 GPTR-RVDVTIGVDYDTDIDKARELLKEILEELPRILKDPA-VVGVTELGDSSVNLRVRAWTKP-GDYWDVRRDIRERIK 253
|
250 260
....*....|....*....|...
gi 983312641 1060 REFKAHNIKISVRQVEVFLMDQK 1082
Cdd:COG0668 254 AALDEAGIEIPFPTRTVHLAEEA 276
|
|
| PRK10334 |
PRK10334 |
small-conductance mechanosensitive channel MscS; |
832-1087 |
1.23e-19 |
|
small-conductance mechanosensitive channel MscS;
Pssm-ID: 182386 [Multi-domain] Cd Length: 286 Bit Score: 90.36 E-value: 1.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 832 ALVIVGITFALAgnLPGLLEVLVLSRlNLAQGSAYATTTLLSYTIVGVGIVSTLSTLGVSWDKLQWLVAALSVGLGFGMQ 911
Cdd:PRK10334 36 AIIIVGLIIARM--ISNAVNRLMISR-KIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQ 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 912 EIFANFISGIMILFERPVRIGDTITIGNLSGTVSKIRIRATTITDFDRKDIIVPNKTFITGQLINWSlTDTVTRVTLKLG 991
Cdd:PRK10334 113 GSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFS-REPVRRNEFIIG 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 992 IDYGSDLDLVRDLLLKGAHENPRVLKDPEPIVYFLNFGESSLDHELRMHVRDLGDRNPTLDEINRyINREFKAHNIKISV 1071
Cdd:PRK10334 192 VAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLER-IKREFDAAGISFPY 270
|
250
....*....|....*.
gi 983312641 1072 RQVEVFLMDQKDGKQQ 1087
Cdd:PRK10334 271 PQMDVNFKRVKEDKAA 286
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
47-318 |
5.63e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 5.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 47 EADQKALQQVLEQTLSQLASKEdseKKLVALKQQLAGAPKETSDSQKELARLKESKPQPVAQRYAtlsvpqLEQMLSERN 126
Cdd:COG1196 245 EAELEELEAELEELEAELAELE---AELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR------LEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 127 TQQGELQKALSEANSLIINSQTRPERAQAEISNSQARAQQINNILKTGKDGGKSINADQRNQLNAELASLNALTLLRRQE 206
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 207 LAGNSLLQDLGNARHDLLIERATRLEQEIQDLQTLINDKRLAQSQEAVTQQSIEAQKAggsslLATESALNLKLSDYLLK 286
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE-----LEEEEEALLELLAELLE 470
|
250 260 270
....*....|....*....|....*....|..
gi 983312641 287 STDRLNELTQQNLRTKQQLDSLTQADQALDEQ 318
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
57-323 |
2.66e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 57 LEQTLSQLASKEDSEKKLV-ALKQQLAGAPKETSDSQKELARLKESKPQpvaqryatlsvpqLEQMLSERNTQQGELQKA 135
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLdELSQELSDASRKIGEIEKEIEQLEQEEEK-------------LKERLEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 136 LSEANSLIINSQTRPERAQAEISNSQAraqQINNIlktgkdgGKSINADQRNQLNAELASLNalTLLRRQELAGNSLLQD 215
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEE---ALNDL-------EARLSHSRIPEIQAELSKLE--EEVSRIEARLREIEQK 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 216 LGnarhDLLIERATrLEQEIQDLQTLINDkrlAQSQEAVTQQSIEAQKAGGSSLLATESALNLKLSDYllksTDRLNELT 295
Cdd:TIGR02169 821 LN----RLTLEKEY-LEKEIQELQEQRID---LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL----ESRLGDLK 888
|
250 260
....*....|....*....|....*...
gi 983312641 296 QQNLRTKQQLDSLTQADQALDEQINVLK 323
Cdd:TIGR02169 889 KERDELEAQLRELERKIEELEAQIEKKR 916
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
51-384 |
3.12e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.94 E-value: 3.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 51 KALQQVLEQTLSQLASKEDSEkklvaLKQQLAGAPKETSDSQKELARLKESkpqpVAQRYATLSvpQLEQMLSERNTQQG 130
Cdd:COG1196 216 RELKEELKELEAELLLLKLRE-----LEAELEELEAELEELEAELEELEAE----LAELEAELE--ELRLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 131 ELQKALSEANSLIINSQTRPERAQAEISNSQARAQQInnilktgkdggksinADQRNQLNAELASLNALTLLRRQELAgn 210
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEEL---------------EEELAELEEELEELEEELEELEEELE-- 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 211 SLLQDLGNARHDLLIERATRLE--QEIQDLQTLINDKRLAQSQEAVTQQSIEAQKAGGSSLLATESALNLKLSDYLLKST 288
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEaeAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 289 DRLNELTQQNLRTKQQLDSLTQADQALDEQINVLKgsLLLSKILYKQKQTLPHLKVDRDLADQIADTRLYQFEVNQQREQ 368
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEALL--ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEG 505
|
330
....*....|....*.
gi 983312641 369 MSSPVTYVDKLLAAQP 384
Cdd:COG1196 506 FLEGVKAALLLAGLRG 521
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
60-264 |
7.64e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 7.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 60 TLSQLASKEDSEKKLVALKQQLAgapketsDSQKELARLKESKPQPVAQRYatlsvpQLEQMLSERNTQQGELQKALSEA 139
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIA-------ELEKELAALKKEEKALLKQLA------ALERRIAALARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 140 NSLIINSQTRPERAQAEISNSQAR-AQQINNILKTGKDGGKSI--NADQRNQLNAELASLNALTLLRRQELAGNSLLQDL 216
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEElAELLRALYRLGRQPPLALllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 983312641 217 GNARHDLLIERATRLEQEIQDLQTLINDKRLAQSQEAVTQQSIEAQKA 264
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELA 209
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
39-326 |
1.39e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 39 KIAERKLPEADQKALQQVLEQTLSQLAS--------KEDSEKKLVALKQQLAGAPKETSDSQKELARLKESKPQPVAQRY 110
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEeleqlrkeLEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 111 ATL-----SVPQLEQMLSERNTQQGELQKALSEANSLIinsqTRPERAQAEISNSQARAQQ----INNILKTGKDGGKSI 181
Cdd:TIGR02168 765 ELEerleeAEEELAEAEAEIEELEAQIEQLKEELKALR----EALDELRAELTLLNEEAANlrerLESLERRIAATERRL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 182 N--ADQRNQLNAELASLNA-------------------LTLLRRQELAGNSLLQDLGNARHDL--LIERATRLEQEIQDL 238
Cdd:TIGR02168 841 EdlEEQIEELSEDIESLAAeieeleelieeleselealLNERASLEEALALLRSELEELSEELreLESKRSELRRELEEL 920
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 239 QTLINDKRLAQSQEAVTQQSIEAQKAGGSSLLATE-SALNLKLSDYLLKSTDRLNELTQQ-------NLRTKQQLDSLTQ 310
Cdd:TIGR02168 921 REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEaEALENKIEDDEEEARRRLKRLENKikelgpvNLAAIEEYEELKE 1000
|
330
....*....|....*.
gi 983312641 311 ADQALDEQINVLKGSL 326
Cdd:TIGR02168 1001 RYDFLTAQKEDLTEAK 1016
|
|
| PRK11465 |
PRK11465 |
putative mechanosensitive channel protein; Provisional |
872-951 |
4.29e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 183147 [Multi-domain] Cd Length: 741 Bit Score: 50.93 E-value: 4.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 872 LSYTIVGVGIVSTLSTLGVSWDKLQWLVAALSVGLGFGMQEIFANFISGIMILFERPVRIGDTITIGNLSGTVSKIRIRA 951
Cdd:PRK11465 517 LAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRS 596
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
51-337 |
1.88e-05 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 48.98 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 51 KALQQVLEQTLSQLaskEDSEKKLVALKQQLAGAPKETSDSQKELAR-------LKESKPQPVAQR--YATLSVpQLEQM 121
Cdd:pfam07111 411 SSTQIWLETTMTRV---EQAVARIPSLSNRLSYAVRKVHTIKGLMARkvalaqlRQESCPPPPPAPpvDADLSL-ELEQL 486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 122 LSERNTQQGELQkalseANSLIINSQTRPERAQAEISNSQAR--AQQINNILKTGKDG----GKSINADQRNQLNA--EL 193
Cdd:pfam07111 487 REERNRLDAELQ-----LSAHLIQQEVGRAREQGEAERQQLSevAQQLEQELQRAQESlasvGQQLEVARQGQQESteEA 561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 194 ASLnaltllrRQELAGNSllQDLGNARHDLLIERATRLEQEIQDLQTLINDKRLAQSQEAVTQQSIEAQKAggssllate 273
Cdd:pfam07111 562 ASL-------RQELTQQQ--EIYGQALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRAT--------- 623
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 983312641 274 salnlklsdyllKSTDRLNELTQ-QNLRTKQQLDSLTQADQALDEQINVLKGSLLLSKILYKQKQ 337
Cdd:pfam07111 624 ------------QEKERNQELRRlQDEARKEEGQRLARRVQELERDKNLMLATLQQEGLLSRYKQ 676
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
46-277 |
2.06e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 2.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 46 PEADQKALQQVLEQTLSQL--ASKEDSEKKLVALKQQLAGAPKETSDSQKELARLKeskpqpvaQRYATLSVPQLEQMLS 123
Cdd:COG3206 147 PELAAAVANALAEAYLEQNleLRREEARKALEFLEEQLPELRKELEEAEAALEEFR--------QKNGLVDLSEEAKLLL 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 124 ErntQQGELQKALSEAnsliinsqtrperaQAEISNSQARAQQINNILKTGKDGGKSINADQRNQ-LNAELASLNA-LTL 201
Cdd:COG3206 219 Q---QLSELESQLAEA--------------RAELAEAEARLAALRAQLGSGPDALPELLQSPVIQqLRAQLAELEAeLAE 281
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 983312641 202 LRRQELAGNSLLQDLGNARHDLLIERATRLEQEIQDLQtliNDKRLAQSQEAVTQQSIEAQKAGGSSLLATESALN 277
Cdd:COG3206 282 LSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLE---AELEALQAREASLQAQLAQLEARLAELPELEAELR 354
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
76-412 |
2.82e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 47.59 E-value: 2.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 76 ALKQQLAGAPKETSDSQKELARLKESKPQpvaqryATLSVPQLEQMLSERNTQQGELQKALSEANSLIINSQTRPERAQA 155
Cdd:COG4372 28 ALSEQLRKALFELDKLQEELEQLREELEQ------AREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 156 EISNSQARAQQINNILKTGKDGGKSINAdQRNQLNAELASLNALTLLRRQELagNSLLQDLgnarhDLLIERATRLEQEI 235
Cdd:COG4372 102 ELESLQEEAEELQEELEELQKERQDLEQ-QRKQLEAQIAELQSEIAEREEEL--KELEEQL-----ESLQEELAALEQEL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 236 QDLQTLINDKRLAQSQEAVTQQSIEAQKAGGSSLLATESALNLKLSDYLLKSTDRLNELTQQNLRTKQQLDSLTQADQAL 315
Cdd:COG4372 174 QALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLE 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 316 DEQINVLKGSLLLSKILYKQKQTLPHLKVDRDLADQIADTRLYQFEVNQQREQMSSPVTYVDKLLAAQPQEAVTPQLRKA 395
Cdd:COG4372 254 EVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALA 333
|
330
....*....|....*..
gi 983312641 396 LLEVAINRSDLLERLNR 412
Cdd:COG4372 334 ILLAELADLLQLLLVGL 350
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
151-439 |
3.64e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 3.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 151 ERAQAEISNSQARAQQINNilktgkdggksinadQRNQLNAELASLNALTLLRRQELAGNSLLQDLGNARHDLLIERATR 230
Cdd:COG1196 235 RELEAELEELEAELEELEA---------------ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 231 LEQEIQDLQTLINDKRLAQSQEAVTQQSIEAQKAGGSSLLATESALNLKLSDYLLKSTDRLNELTQQNLRTKQQLDSLTQ 310
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 311 ADQALDEQInvlkgSLLLSKILYKQKQTLPHLKVDRDLADQIADTRLYQFEVNQQREQmsspvtyvdkllAAQPQEAVTP 390
Cdd:COG1196 380 ELEELAEEL-----LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE------------LEEEEEEEEE 442
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 983312641 391 QLRKALLEVAiNRSDLLERLNRELSALLNESITLQLNQKQLLGTAQSLR 439
Cdd:COG1196 443 ALEEAAEEEA-ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
57-444 |
1.27e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 57 LEQTLSQLA-SKEDSEKKLVALKQQLAGAPKE---TSDSQKELARLKESKPQPVAQRYATLSvpQLEQMLSERNTQQGEL 132
Cdd:TIGR04523 223 LKKQNNQLKdNIEKKQQEINEKTTEISNTQTQlnqLKDEQNKIKKQLSEKQKELEQNNKKIK--ELEKQLNQLKSEISDL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 133 --QKA---LSEANSLIINSQTRPERAQAEISNSQARAQQIN---NILKTGKDGGKSINADQRNQLNAELaslNALTLLRR 204
Cdd:TIGR04523 301 nnQKEqdwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNeqiSQLKKELTNSESENSEKQRELEEKQ---NEIEKLKK 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 205 QELAGNSLLQDLGNARHDL--LIERATRLEQEIQD-LQTLINDKRLAQSQEAVTQQSIEAQKAGGSSLLATESALNL--- 278
Cdd:TIGR04523 378 ENQSYKQEIKNLESQINDLesKIQNQEKLNQQKDEqIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELiik 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 279 -----------KLSDY-----------------LLKSTDRLNELTQQNLRTKQQLDSLTQADQALDEQINVLKgslllSK 330
Cdd:TIGR04523 458 nldntresletQLKVLsrsinkikqnleqkqkeLKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLE-----SE 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 331 ILYKQKQtLPHLKVDRDLADQIADTRLYQFEVNQQREQMSSPVTYVDKLLAAQPQ--------EAVTPQLRKALLEVAIN 402
Cdd:TIGR04523 533 KKEKESK-ISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEkqelidqkEKEKKDLIKEIEEKEKK 611
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 983312641 403 RSDL---LERLNRELSALLNESITLQLNQKQLLGTAQSLRTTLDE 444
Cdd:TIGR04523 612 ISSLekeLEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
39-438 |
1.54e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 39 KIAERKLPEAdQKALQQV------LEQTLSQLASKEDSEKKLVALKQQLagapketsdSQKELARLKESKPQPVAQRYAT 112
Cdd:TIGR02168 175 KETERKLERT-RENLDRLedilneLERQLKSLERQAEKAERYKELKAEL---------RELELALLVLRLEELREELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 113 LS-VPQLEQMLSERNTQQGELQKALSEANSLIINSQTRPERAQAEISNSQARAQQINNILKtgkdggksINADQRNQLNA 191
Cdd:TIGR02168 245 QEeLKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ--------ILRERLANLER 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 192 ELASLNAltllRRQELAgnsllqdlgnARHDLLIERATRLEQEIQDLQTLINDKRLAQSQEAVTQQSIEAQKAggssllA 271
Cdd:TIGR02168 317 QLEELEA----QLEELE----------SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE------E 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 272 TESALNLKLSDYLlkstDRLNELTQQNLRTKQQLDSLTQADQALDEQINVLKGslLLSKILYKQKQtlphlkvdrDLADQ 351
Cdd:TIGR02168 377 LEEQLETLRSKVA----QLELQIASLNNEIERLEARLERLEDRRERLQQEIEE--LLKKLEEAELK---------ELQAE 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 352 IADTRLYQFEVNQQREQMSSPVTYVDKLLAAQPQEAvtpQLRKALLEVAINRSDLLERLNRELSALLNESITLQLNQKQL 431
Cdd:TIGR02168 442 LEELEEELEELQEELERLEEALEELREELEEAEQAL---DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
|
....*..
gi 983312641 432 LGTAQSL 438
Cdd:TIGR02168 519 SGILGVL 525
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
7-276 |
1.62e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 7 LRTALLGLCLSLSFAATAAEAPTtaSIQNSLDKIAERKlpEADQKALQQVLEQTLSQLASKEDSEKKLVALKQQLAGAPK 86
Cdd:COG4942 1 MRKLLLLALLLALAAAAQADAAA--EAEAELEQLQQEI--AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 87 ETSDSQKELARLKEskpqpvaqryatlsvpQLEQMLSERNTQQGELQKALSEANSLIINSQTRPERAQAEISNSQARAQQ 166
Cdd:COG4942 77 ELAALEAELAELEK----------------EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQY 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 167 INNILKTGKDGGKSINADQrnqlnAELASLNALTLLRRQELAgnSLLQDLGNARhdllieraTRLEQEIQDLQTLINDkr 246
Cdd:COG4942 141 LKYLAPARREQAEELRADL-----AELAALRAELEAERAELE--ALLAELEEER--------AALEALKAERQKLLAR-- 203
|
250 260 270
....*....|....*....|....*....|
gi 983312641 247 lAQSQEAVTQQSIEAQKAGGSSLLATESAL 276
Cdd:COG4942 204 -LEKELAELAAELAELQQEAEELEALIARL 232
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
74-253 |
1.83e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 44.75 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 74 LVALKQQLAG----APKETSDSQKELARLKESKPQPVAQRYATLSVpQLEQMLSERNTQQGELQKALSEANSLIINSQTR 149
Cdd:pfam09787 2 LESAKQELADykqkAARILQSKEKLIASLKEGSGVEGLDSSTALTL-ELEELRQERDLLREEIQKLRGQIQQLRTELQEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 150 PERAQAEISNSQARAQQINNILKTGKDGgksinadqRNQLNAELASLnaltllrRQELagNSLLQDLGNARHDlLIERAT 229
Cdd:pfam09787 81 EAQQQEEAESSREQLQELEEQLATERSA--------RREAEAELERL-------QEEL--RYLEEELRRSKAT-LQSRIK 142
|
170 180
....*....|....*....|....
gi 983312641 230 RLEQEIQDLQTLINDKRLAQSQEA 253
Cdd:pfam09787 143 DREAEIEKLRNQLTSKSQSSSSQS 166
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
117-430 |
2.78e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 117 QLEQMLSERNTQQGE---LQKALSEANSLIINSQTrperaqaEISNSQARAQQINNILKTGKDGGKSINAD--------- 184
Cdd:TIGR04523 41 KLKTIKNELKNKEKElknLDKNLNKDEEKINNSNN-------KIKILEQQIKDLNDKLKKNKDKINKLNSDlskinseik 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 185 ----QRNQLNAELASL---------------NALTLLRRQELAGNSLLQDLGNARHDLLIERaTRLEQEIQDLQTLINDK 245
Cdd:TIGR04523 114 ndkeQKNKLEVELNKLekqkkenkknidkflTEIKKKEKELEKLNNKYNDLKKQKEELENEL-NLLEKEKLNIQKNIDKI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 246 RLAQSQEAVTQQSIEAQKAGGSSLLATESAL---NLKLSDYLLKSTDRLNELTQQNLRTKQQLdsltqaDQALDEQINVL 322
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNKSLESQISELkkqNNQLKDNIEKKQQEINEKTTEISNTQTQL------NQLKDEQNKIK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 323 KGsllLSKilyKQKQTLPHLKVDRDLADQIADTRLYQFEVNQQREQMSSpvTYVDKLLAAQPQEAVTPQLRKALLEVAIN 402
Cdd:TIGR04523 267 KQ---LSE---KQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWN--KELKSELKNQEKKLEEIQNQISQNNKIIS 338
|
330 340 350
....*....|....*....|....*....|.
gi 983312641 403 R-SDLLERLNRELSALLNE--SITLQLNQKQ 430
Cdd:TIGR04523 339 QlNEQISQLKKELTNSESEnsEKQRELEEKQ 369
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
137-445 |
4.12e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 4.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 137 SEANSLIINSQTRPERAQAEISNSQARAQQINNILKTGKDggksinadQRNQLNAELASLNAltllrrqelAGNSLLQDL 216
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRK--------ELEELEEELEQLRK---------ELEELSRQI 728
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 217 GNARHDLLieratRLEQEIQDLQtlindKRLAQSQEAVTQQsiEAQKAGGSSLLAtesalnlKLSDYLLKSTDRLNELTQ 296
Cdd:TIGR02168 729 SALRKDLA-----RLEAEVEQLE-----ERIAQLSKELTEL--EAEIEELEERLE-------EAEEELAEAEAEIEELEA 789
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 297 QNLRTKQQLDSLTQADQALDEQINVLKGSL---------LLSKILYKQKQTLPHLKVDRDLADQIADTRLYQFEVNQQRE 367
Cdd:TIGR02168 790 QIEQLKEELKALREALDELRAELTLLNEEAanlrerlesLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE 869
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 983312641 368 QMSSPVTYVDKLLAAQPQEAVTPQLRKALLEVAINRSDL-LERLNRELSALLNESITLQLNQKQLLGTAQSLRTTLDEQ 445
Cdd:TIGR02168 870 ELESELEALLNERASLEEALALLRSELEELSEELRELESkRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
41-432 |
4.72e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 4.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 41 AERKLPEADQKALQQVLEQTLSQLASKEDSEKKLVALKQQLAgapkETSDSQKELARLKESKP----QPVAQRYATLS-- 114
Cdd:TIGR00618 226 KELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRA----RIEELRAQEAVLEETQErinrARKAAPLAAHIka 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 115 VPQLEQMLSERNT----QQGELQKALSEANSLIINSQTRPERAQAEisnSQARAQQINNILKTGKDGGKsinadqRNQLN 190
Cdd:TIGR00618 302 VTQIEQQAQRIHTelqsKMRSRAKLLMKRAAHVKQQSSIEEQRRLL---QTLHSQEIHIRDAHEVATSI------REISC 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 191 AELASLNALTLLRRQELAgnsLLQDLGNARHDLLIERAtrlEQEIQDLQTLinDKRLAQSQEAVTQQSIEAQK--AGGSS 268
Cdd:TIGR00618 373 QQHTLTQHIHTLQQQKTT---LTQKLQSLCKELDILQR---EQATIDTRTS--AFRDLQGQLAHAKKQQELQQryAELCA 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 269 LLATESALNLKLSDYLL-KSTDRLNELTQQnLRTKQQLDSLTQADQALDEQ-INVLKGS---LLLSKILYKQKQTLPHL- 342
Cdd:TIGR00618 445 AAITCTAQCEKLEKIHLqESAQSLKEREQQ-LQTKEQIHLQETRKKAVVLArLLELQEEpcpLCGSCIHPNPARQDIDNp 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 343 KVDRDLADQIADTRLYQFEVNQQREQMSSPVTYVDKLLAAQPQEA-----VTPQLRKALLEVAINRSDLLERLNRELSAL 417
Cdd:TIGR00618 524 GPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIqqsfsILTQCDNRSKEDIPNLQNITVRLQDLTEKL 603
|
410
....*....|....*
gi 983312641 418 LNESITLQLNQKQLL 432
Cdd:TIGR00618 604 SEAEDMLACEQHALL 618
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
51-451 |
5.31e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 5.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 51 KALQQVLE------QTLSQLASKEDSEKKLV--------ALKQQLAGAPKETSDSQKELARL-----------KESKPQP 105
Cdd:TIGR00618 382 HTLQQQKTtltqklQSLCKELDILQREQATIdtrtsafrDLQGQLAHAKKQQELQQRYAELCaaaitctaqceKLEKIHL 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 106 VAQRYATLSVPQLEQMLsERNTQQGELQKALSEANSLIINSQTRP--------ERAQAEISNSQARAQQINNILKTGKDG 177
Cdd:TIGR00618 462 QESAQSLKEREQQLQTK-EQIHLQETRKKAVVLARLLELQEEPCPlcgscihpNPARQDIDNPGPLTRRMQRGEQTYAQL 540
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 178 GKSInADQRNQLNAELASL----NALTLLRRQELAGNSLLQDLGNArhdllIERATRLEQEIQDL---QTLINDKRLAQS 250
Cdd:TIGR00618 541 ETSE-EDVYHQLTSERKQRaslkEQMQEIQQSFSILTQCDNRSKED-----IPNLQNITVRLQDLtekLSEAEDMLACEQ 614
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 251 QEAVTQQSIEAQKaggSSLLATESALNLKLSDYLLKSTDRLNELTQQN-----LRTKQQLDSLTQADQALDEQINVLKGS 325
Cdd:TIGR00618 615 HALLRKLQPEQDL---QDVRLHLQQCSQELALKLTALHALQLTLTQERvrehaLSIRVLPKELLASRQLALQKMQSEKEQ 691
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 326 LLLSKILYKQKQTLPH------LKVDRDLADQIADTRLYQFEVNQQREQMSSPVTYVDKLLAAQPQEAVTPQLRKALLE- 398
Cdd:TIGR00618 692 LTYWKEMLAQCQTLLRelethiEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVt 771
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 983312641 399 VAINRSDLLERLNRElsallnesitLQLNQKQLLGTAQSLRTTLDEQMFWIPS 451
Cdd:TIGR00618 772 AALQTGAELSHLAAE----------IQFFNRLREEDTHLLKTLEAEIGQEIPS 814
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
96-431 |
5.33e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.74 E-value: 5.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 96 ARLKESKPQPVAQRYATLSVPQLEQMLSERNTQQGELQKA---LSEANSLIINSQTRPERAQAEISNSQARAQQINNILK 172
Cdd:COG4372 11 ARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLreeLEQAREELEQLEEELEQARSELEQLEEELEELNEQLQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 173 TGKDGGKSINA------DQRNQLNAELASLNA-LTLLRRQELAGNSLLQDLGN------ARHDLLIERATRLEQEIQDLQ 239
Cdd:COG4372 91 AAQAELAQAQEeleslqEEAEELQEELEELQKeRQDLEQQRKQLEAQIAELQSeiaereEELKELEEQLESLQEELAALE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 240 TLINDKRLAQSQEAVTQQSIEAQKAggsSLLATESALNLKLSDYLLKSTDRLNELTQQNLRTKQQLDSLTQADQALDEQI 319
Cdd:COG4372 171 QELQALSEAEAEQALDELLKEANRN---AEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEED 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 320 NVLKGSLLLSKILYKQKQTLPHLKVDRDLADQIADTRLYQFEVNQQREQMSSPVTYVDKLLAAQPQEavtPQLRKALLEV 399
Cdd:COG4372 248 KEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALE---DALLAALLEL 324
|
330 340 350
....*....|....*....|....*....|..
gi 983312641 400 AINRSDLLERLNRELSALLNESITLQLNQKQL 431
Cdd:COG4372 325 AKKLELALAILLAELADLLQLLLVGLLDNDVL 356
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
33-406 |
5.84e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 5.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 33 IQNSLDKIAERKLP-EADQKALQQVLEQ----TLSQLASKEDSEKKLVALKQqlagapKETSDSQKELARLKESKpQPVA 107
Cdd:TIGR00606 267 LDNEIKALKSRKKQmEKDNSELELKMEKvfqgTDEQLNDLYHNHQRTVREKE------RELVDCQRELEKLNKER-RLLN 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 108 QRYATLSVPQleqmlSERNTQQGELQKALSEANSLIINSQTRPERAQAEISNSQARaqQINNILKTGKDGgKSINADQRN 187
Cdd:TIGR00606 340 QEKTELLVEQ-----GRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSER--QIKNFHTLVIER-QEDEAKTAA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 188 QLNAELAS-----LNALTLLRRQELAGNSLLQDlgnaRHDLLIERATRLEQEIQDLQTLI-NDKRLAQSQEAVTQQSIEA 261
Cdd:TIGR00606 412 QLCADLQSkerlkQEQADEIRDEKKGLGRTIEL----KKEILEKKQEELKFVIKELQQLEgSSDRILELDQELRKAEREL 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 262 QKAGGSS----LLATESALNLKLSDYL--LKSTDRLNELTQQNLRTKQQLDSLTQADQALDEQINVLKG-------SLL- 327
Cdd:TIGR00606 488 SKAEKNSltetLKKEVKSLQNEKADLDrkLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSrhsdeltSLLg 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 328 -------LSKILYKQKQTLPHLKVD-RDLADQIADTRLYQFEVNQQREQMSSPV-TYVDKLLAA---QPQEAVTPQLRKA 395
Cdd:TIGR00606 568 yfpnkkqLEDWLHSKSKEINQTRDRlAKLNKELASLEQNKNHINNELESKEEQLsSYEDKLFDVcgsQDEESDLERLKEE 647
|
410
....*....|.
gi 983312641 396 LLEVAINRSDL 406
Cdd:TIGR00606 648 IEKSSKQRAML 658
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
226-445 |
6.26e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 226 ERATRLEQEIQDLQTLINDKRLAQSQEAVTQQSIEAQKAggssllatesalnlKLSDYLLKSTDRLNELTQQNLRTKQQL 305
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA--------------ALERRIAALARRIRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 306 DSLTQADQALDEQINVLKGSL-LLSKILYKQKQTlPHLK--------------------VDRDLADQIADTRLYQFEVNQ 364
Cdd:COG4942 86 AELEKEIAELRAELEAQKEELaELLRALYRLGRQ-PPLAlllspedfldavrrlqylkyLAPARREQAEELRADLAELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 365 QREQMSSPVTYVDKLLAAQPQEavtpqlRKALLEVAINRSDLLERLNRELSALLNESITLQLNQKQLLGTAQSLRTTLDE 444
Cdd:COG4942 165 LRAELEAERAELEALLAELEEE------RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
.
gi 983312641 445 Q 445
Cdd:COG4942 239 A 239
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
44-331 |
1.41e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 44 KLPEADQKALQqvLEQTLSQLASKEDSEKKLVALKQQLAG--APKETSDSQKELARLKESkpqpvaQRYATLSVPQLEQM 121
Cdd:PRK04863 450 KEQEATEELLS--LEQKLSVAQAAHSQFEQAYQLVRKIAGevSRSEAWDVARELLRRLRE------QRHLAEQLQQLRMR 521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 122 LSE---RNTQQGELQKALSEANSLIINSQTRPERAQAEisnsQARAQQinnilktgkdggksinadQRNQLNAELASLna 198
Cdd:PRK04863 522 LSEleqRLRQQQRAERLLAEFCKRLGKNLDDEDELEQL----QEELEA------------------RLESLSESVSEA-- 577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 199 ltllrrqelagnsllqdlgnarhdllIERATRLEQEIQDLQTLIndKRLAQ-------SQEAVTQ---QSIEAQKAGGSs 268
Cdd:PRK04863 578 --------------------------RERRMALRQQLEQLQARI--QRLAArapawlaAQDALARlreQSGEEFEDSQD- 628
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 983312641 269 llatesalnlkLSDYLLKSTDRLNELTQQNLRT-------KQQLDSLTQADQALDEQINVLK---GSLLLSKI 331
Cdd:PRK04863 629 -----------VTEYMQQLLERERELTVERDELaarkqalDEEIERLSQPGGSEDPRLNALAerfGGVLLSEI 690
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
39-444 |
2.56e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 39 KIAERKLPEADQKALQQVLEQTlSQLaskEDSEKKLVALKQQLAGAPKETSDSQKELARLKESKpQPVAQRYAtlsvpQL 118
Cdd:pfam01576 341 RSHEAQLQEMRQKHTQALEELT-EQL---EQAKRNKANLEKAKQALESENAELQAELRTLQQAK-QDSEHKRK-----KL 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 119 EQMLSERNTQQGELQKALSEANSliinsqtRPERAQAEISN-----SQARAQQInnilKTGKDGGK--SINADQRNQLNA 191
Cdd:pfam01576 411 EGQLQELQARLSESERQRAELAE-------KLSKLQSELESvssllNEAEGKNI----KLSKDVSSleSQLQDTQELLQE 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 192 EL-ASLNALTLLRRQELAGNSLLQDLgnarhDLLIERATRLEQEIQDLQTLINDKRLAQSQEAVTQQSI-EAQKAGGSSL 269
Cdd:pfam01576 480 ETrQKLNLSTRLRQLEDERNSLQEQL-----EEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALeEGKKRLQREL 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 270 LATESALNLKLSDYllkstdrlNELTQQNLRTKQQLDSLTqadQALDEQinvlkgSLLLSKILYKQKqtlphlKVDRDLA 349
Cdd:pfam01576 555 EALTQQLEEKAAAY--------DKLEKTKNRLQQELDDLL---VDLDHQ------RQLVSNLEKKQK------KFDQMLA 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 350 DQIADTRLYQFEvnqqREQMSSpvtyvdkllAAQPQEAVTPQLRKAlLEVAINRSDLLERLNRELSALLNESIT------ 423
Cdd:pfam01576 612 EEKAISARYAEE----RDRAEA---------EAREKETRALSLARA-LEEALEAKEELERTNKQLRAEMEDLVSskddvg 677
|
410 420
....*....|....*....|....*.
gi 983312641 424 -----LQLNQKQLLGTAQSLRTTLDE 444
Cdd:pfam01576 678 knvheLERSKRALEQQVEEMKTQLEE 703
|
|
| Laminin_I |
pfam06008 |
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from ... |
32-277 |
2.78e-03 |
|
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.
Pssm-ID: 310534 [Multi-domain] Cd Length: 258 Bit Score: 40.86 E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 32 SIQNSLDKIAERKLPEADQKALQQVLEQTLSQLASKEDS--EKKLVALK--QQLAGAPKETSDSQKELARLKESKPQPVA 107
Cdd:pfam06008 20 NLENLTKQLQEYLSPENAHKIQIEILEKELSSLAQETEElqKKATQTLAkaQQVNAESERTLGHAKELAEAIKNLIDNIK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 108 QRYATLSVPQLEQMlserNTQQGELQKALSEANSL-----IINSQTRPERAQAEISNSQARAQQINNILKTGKDGGKSIN 182
Cdd:pfam06008 100 EINEKVATLGENDF----ALPSSDLSRMLAEAQRMlgeirSRDFGTQLQNAEAELKAAQDLLSRIQTWFQSPQEENKALA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 183 ADQRNQLNAELASLNALtllrrqelagNSLLQDLGNARHDllierATRLEQEIQDLQTLINDKRLA-QSQEAVTQQSIea 261
Cdd:pfam06008 176 NALRDSLAEYEAKLSDL----------RELLREAAAKTRD-----ANRLNLANQANLREFQRKKEEvSEQKNQLEETL-- 238
|
250
....*....|....*.
gi 983312641 262 qKAGGSSLLATESALN 277
Cdd:pfam06008 239 -KTARDSLDAANLLLQ 253
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
222-419 |
3.22e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 222 DLLIERATRLEQEIQDLQTLIndKRLAQSQEAVTQQSIEAQKAGGS--------SLLATESALNLKLSDyLLKSTDRLNE 293
Cdd:COG4913 613 AALEAELAELEEELAEAEERL--EALEAELDALQERREALQRLAEYswdeidvaSAEREIAELEAELER-LDASSDDLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 294 LtqqnlrtKQQLDSLTQADQALDEQINVLKGslllskilyKQKQTLPHLKVDRDLADQiADTRLYQFEVNQQREqmssPV 373
Cdd:COG4913 690 L-------EEQLEELEAELEELEEELDELKG---------EIGRLEKELEQAEEELDE-LQDRLEAAEDLARLE----LR 748
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 983312641 374 TYVDKLLAAQPQEAVTPQLRKALLEvaiNRSDLLERLNRELSALLN 419
Cdd:COG4913 749 ALLEERFAAALGDAVERELRENLEE---RIDALRARLNRAEEELER 791
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
38-268 |
3.53e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 3.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 38 DKIAERKLPEADQKALQQVLEQTLSQLASK-EDSEKKLVALKQQLAGAPKETSDSQKELARLKESkpqpVAQRYATL--- 113
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAElEELNEEYNELQAELEALQAEIDKLQAEIAEAEAE----IEERREELger 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 114 ---------SVPQLEQMLSERNTQ----QGELQKALSEANSLIINSQtrpERAQAEISNSQARAQQINNILKTgkdggks 180
Cdd:COG3883 92 aralyrsggSVSYLDVLLGSESFSdfldRLSALSKIADADADLLEEL---KADKAELEAKKAELEAKLAELEA------- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 181 inadQRNQLNAELASLNALTLLRRQELAGNSllqdlgnARHDLLIERATRLEQEIQDLQTLINDKRLAQSQEAVTQQSIE 260
Cdd:COG3883 162 ----LKAELEAAKAELEAQQAEQEALLAQLS-------AEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
....*...
gi 983312641 261 AQKAGGSS 268
Cdd:COG3883 231 AAAAAAAA 238
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
48-365 |
3.60e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 48 ADQKALQQVLEQTLSQL----ASKEDSEKKLVALKQQLAGAPKETSDSQKELARLKESKPQpvAQRyatlsvpQLEQMLS 123
Cdd:COG4372 38 FELDKLQEELEQLREELeqarEELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQ--AQE-------ELESLQE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 124 ERNTQQGELQKALSEANSLIINSQ---TRPERAQAEISNSQARAQQINNILKTGKDGGKSINADQRNQLNAELasLNALT 200
Cdd:COG4372 109 EAEELQEELEELQKERQDLEQQRKqleAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEA--EQALD 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 201 LLRRQElagNSLLQDLGNARHDLLIERATRLEQEIQDLQTLINDKRLAQSQEAVTQQSIEAQKAGGSSLLATESALNLKL 280
Cdd:COG4372 187 ELLKEA---NRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEEL 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 281 SDYLLKSTDRLNELTQQNLRTKQQLDSLTQADQALDEQINVLKGSLLLSKILYKQKQTLPHLKVDRDLADQIADTRLYQF 360
Cdd:COG4372 264 ELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLL 343
|
....*
gi 983312641 361 EVNQQ 365
Cdd:COG4372 344 QLLLV 348
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
37-352 |
4.41e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 37 LDKIAERKLP-EADQKALQQVLEQTLSQLASKEDSEKKLVALKQQLAGAPKETSDSQKELARLKESKpqPVAQRYATLSv 115
Cdd:PRK03918 223 LEKLEKEVKElEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK--EKAEEYIKLS- 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 116 PQLEQMLSERNTQQGELQKALSEANSLiinsqtrpERAQAEISNSQARAQQINNILKTGKDGGKSINADQR--NQLNAEL 193
Cdd:PRK03918 300 EFYEEYLDELREIEKRLSRLEEEINGI--------EERIKELEEKEERLEELKKKLKELEKRLEELEERHElyEEAKAKK 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 194 ASLNALtllrRQELAGNSlLQDLgNARHDLLIERATRLEQEIQDLQTLIN--DKRLAQSQEAVtqqsIEAQKAGG----- 266
Cdd:PRK03918 372 EELERL----KKRLTGLT-PEKL-EKELEELEKAKEEIEEEISKITARIGelKKEIKELKKAI----EELKKAKGkcpvc 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 267 SSLLATESALNLkLSDYLLKSTDRLNELtqqnlrtkqqldsltqadQALDEQINVLKGSLL-LSKILYKQkqtlPHLKVD 345
Cdd:PRK03918 442 GRELTEEHRKEL-LEEYTAELKRIEKEL------------------KEIEEKERKLRKELReLEKVLKKE----SELIKL 498
|
....*..
gi 983312641 346 RDLADQI 352
Cdd:PRK03918 499 KELAEQL 505
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
34-245 |
6.08e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 6.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 34 QNSLDKIAERklpEADQKALQQVLEQTLSQLASKEDSEKKLVALKQQL-------------AGAPKETSDSQKELARLKE 100
Cdd:COG4913 606 FDNRAKLAAL---EAELAELEEELAEAEERLEALEAELDALQERREALqrlaeyswdeidvASAEREIAELEAELERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 101 SKPQpvaqryatlsVPQLEQMLSERNTQQGELQKALSEANSLIINSQTRPERAQAEISNSQARAQQinnilktgkdggks 180
Cdd:COG4913 683 SSDD----------LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA-------------- 738
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 983312641 181 INADQRNQLNAELASLNALTLLRRQElagNSLLQDLGNARhDLLIERATRLEQEIQDLQTLINDK 245
Cdd:COG4913 739 AEDLARLELRALLEERFAAALGDAVE---RELRENLEERI-DALRARLNRAEEELERAMRAFNRE 799
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
33-445 |
9.46e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 9.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 33 IQNSLDKIAERKlpEADQKALQQVLEQTLSQLASKEDSEKKLVALKQQLAGAPKETSDSQKELARLKESkpqpvAQRYAT 112
Cdd:COG1196 321 LEEELAELEEEL--EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE-----LLEALR 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 113 LSVPQLEQMLSERNTQQGELQKALSEANSLIINSQTRPERAQAEISNSQARAQQINNILKTgkdggksinADQRNQLNAE 192
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL---------EEEEEALLEL 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 193 LASLNALTLLRRQELAGNSLLQDLGNARHDLLIERATRLEQEIQD---LQTLINDKRLAQ------SQEAVTQQSIEAQK 263
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkaALLLAGLRGLAGavavliGVEAAYEAALEAAL 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 264 AGGSSLLATESALNLKLSDYLLKSTD--RLNELTQQNLRTKQQLDSLTQADQALDEQINVLKGSLLLSKILYKQKQTLph 341
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKagRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL-- 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 342 lkVDRDLADQIADTRLYQFEVNQQREQMsspVTYVDKLLAAQPQEAV--TPQLRKALLEVAINRSDLLERLNRELSALLN 419
Cdd:COG1196 623 --LGRTLVAARLEAALRRAVTLAGRLRE---VTLEGEGGSAGGSLTGgsRRELLAALLEAEAELEELAERLAEEELELEE 697
|
410 420
....*....|....*....|....*.
gi 983312641 420 ESITLQLNQKQLLGTAQSLRTTLDEQ 445
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEE 723
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
32-336 |
9.74e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 39.94 E-value: 9.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 32 SIQNSLDKIAERKLPEADQKALQQVLEQTLSQLASKEDSEKKL---VALKQQLAGAPKETSDSQKELARLKESKPQPVAQ 108
Cdd:COG5185 290 QFENTKEKIAEYTKSIDIKKATESLEEQLAAAEAEQELEESKReteTGIQNLTAEIEQGQESLTENLEAIKEEIENIVGE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 109 RyatlSVPQLEQMLSERNTQQGELQKALSEANsliinsqtrperaqaeisnsQARAQQINNILKTGKDgGKSINADQRNQ 188
Cdd:COG5185 370 V----ELSKSSEELDSFKDTIESTKESLDEIP--------------------QNQRGYAQEILATLED-TLKAADRQIEE 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 189 LNAELASLNaltllRRQELAGNSLLQdlgnarhdlLIERATRLEQEIQDLqtlindkrlaqsqeaVTQQSIEAQKAGGSS 268
Cdd:COG5185 425 LQRQIEQAT-----SSNEEVSKLLNE---------LISELNKVMREADEE---------------SQSRLEEAYDEINRS 475
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 983312641 269 LLATESALNLKLSDylLKStdRLNELTQ--QNLRTKQQlDSLTQADQALDEQINVLKGSLLLSKILYKQK 336
Cdd:COG5185 476 VRSKKEDLNEELTQ--IES--RVSTLKAtlEKLRAKLE-RQLEGVRSKLDQVAESLKDFMRARGYAHILA 540
|
|
| |
