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Conserved domains on  [gi|981316994|ref|WP_059533709|]
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methionine ABC transporter permease [Burkholderia ubonensis]

Protein Classification

methionine ABC transporter permease( domain architecture ID 10005172)

methionine ABC transporter permease is the transmembrane (TM) subunit of the ABC transporter complex, such as MetNPQ, that is involved in methionine import, and is responsible for the translocation of the substrate across the membrane

EC:  7.4.2.11
Gene Ontology:  GO:0033232|GO:0048473|GO:0042626
PubMed:  22095702|11421270|25750732|24638992
TCDB:  3.A.1.24

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 1-208 2.66e-87

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 441614  Cd Length: 220  Bit Score: 256.91  E-value: 2.66e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994   1 MFELWWPELLDAMRDTLSMVAASAAIAALVGTPLAVILVTTAPGGIYARRGLNTALGAIVNVFRSTPFIILLVALLPFTR 80
Cdd:COG2011    4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  81 VLIGTTIGVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIGS 160
Cdd:COG2011   84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 981316994 161 TAMAGAVGAGGLGDLAIRYGYQRFDTTVMATVIVILIALVSAVQVTGD 208
Cdd:COG2011  164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGD 211
 
Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 1-208 2.66e-87

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 256.91  E-value: 2.66e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994   1 MFELWWPELLDAMRDTLSMVAASAAIAALVGTPLAVILVTTAPGGIYARRGLNTALGAIVNVFRSTPFIILLVALLPFTR 80
Cdd:COG2011    4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  81 VLIGTTIGVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIGS 160
Cdd:COG2011   84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 981316994 161 TAMAGAVGAGGLGDLAIRYGYQRFDTTVMATVIVILIALVSAVQVTGD 208
Cdd:COG2011  164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGD 211
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
15-208 2.97e-47

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 154.89  E-value: 2.97e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  15 DTLSMVAASAAIAALVGTPLAVILVTTAPGGIYARRGLNTALGAIVNVFRSTPFIILLVALLPFTRVLIGTTIGVWAAVV 94
Cdd:PRK10782  15 ETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIV 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  95 PLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIGSTAMAGAVGAGGLGD 174
Cdd:PRK10782  95 PLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQ 174

                        170       180       190
                 ....*....|....*....|....*....|....
gi 981316994 175 LAIRYGYQRFDTTVMATVIVILIALVSAVQVTGD 208
Cdd:PRK10782 175 IGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGD 208
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 13-203 3.60e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 54.21  E-value: 3.60e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  13 MRDTLSMVAASAAIAALVGTPLAVILVttapggiYARRGLNTALGAIVNVFRSTPFIILLVALLPFTRVLIGTTIG---V 89
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILA-------RKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  90 WAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIGSTAMAGAVGA 169
Cdd:cd06261   74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153

                        170       180       190
                 ....*....|....*....|....*....|....
gi 981316994 170 GGLGDLAIRYGYQRFDTTVMATVIVILIALVSAV 203
Cdd:cd06261  154 GEAPGPGTGLLLIFAILFPGDLGVAAAVALILLL 187
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 45-203 3.74e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 54.23  E-value: 3.74e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994   45 GIYARRGLNTALGAIVNVFRSTPFIILLVALLPFTRVLIgTTIGVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAAL 124
Cdd:pfam00528   9 ALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSI-LGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAAR 87

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 981316994  125 AMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIGSTAMAGAVGAGGLGDLAIRYGYQRFDTTVMATVIVILIALVSAV 203
Cdd:pfam00528  88 ALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLL 166
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 84-161 2.07e-06

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 47.26  E-value: 2.07e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 981316994   84 GTTIGVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIGST 161
Cdd:TIGR02138 146 LFGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGET 223
 
Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 1-208 2.66e-87

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 256.91  E-value: 2.66e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994   1 MFELWWPELLDAMRDTLSMVAASAAIAALVGTPLAVILVTTAPGGIYARRGLNTALGAIVNVFRSTPFIILLVALLPFTR 80
Cdd:COG2011    4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  81 VLIGTTIGVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIGS 160
Cdd:COG2011   84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 981316994 161 TAMAGAVGAGGLGDLAIRYGYQRFDTTVMATVIVILIALVSAVQVTGD 208
Cdd:COG2011  164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGD 211
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
15-208 2.97e-47

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 154.89  E-value: 2.97e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  15 DTLSMVAASAAIAALVGTPLAVILVTTAPGGIYARRGLNTALGAIVNVFRSTPFIILLVALLPFTRVLIGTTIGVWAAVV 94
Cdd:PRK10782  15 ETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIV 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  95 PLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIGSTAMAGAVGAGGLGD 174
Cdd:PRK10782  95 PLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQ 174

                        170       180       190
                 ....*....|....*....|....*....|....
gi 981316994 175 LAIRYGYQRFDTTVMATVIVILIALVSAVQVTGD 208
Cdd:PRK10782 175 IGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGD 208
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 6-200 1.92e-11

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 60.84  E-value: 1.92e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994   6 WPELLDAMRDTLSMVAASAAIAALVGTPLAVIlvttapggIYARRGLNTALGAIVNVFRSTPFIILLVALLPFTrvligt 85
Cdd:COG1174   13 RDGILALLLEHLLLVLLALLIALLIAVPLGIL--------ITRRRRLAGLVLGVANILQTIPSLALLALLIPLL------ 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  86 TIGVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIGSTAMAG 165
Cdd:COG1174   79 GIGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAA 158

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 981316994 166 AVGAGGLGDLAIRyGYQRFDTTVM--ATVIVILIALV 200
Cdd:COG1174  159 LIGAGGLGDLIFD-GLQLNNTALIlaGAILVALLALL 194
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 5-158 3.39e-10

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 57.39  E-value: 3.39e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994   5 WWPELLDAMRDTLSMVAASAAIAALVGTPLAVILVttapggiYARRGLNTALGAIVNVFRSTPFIILLVAL---LPftrv 81
Cdd:COG0765   11 YLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARL-------SPNPVLRWLATAYVEFFRGTPLLVQLFFIyfgLP---- 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 981316994  82 LIGTTIG-VWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALI 158
Cdd:COG0765   80 LLGIDLSpFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLL 157
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 14-158 1.85e-09

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 55.89  E-value: 1.85e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  14 RDTLSMVAASAAIAALVGtpLAVILVTTAPGGI------YARRGLNTALGAIVNVFRSTPFIILLVALLpftrVLIGTti 87
Cdd:COG1173   68 RDVLSRLLYGARISLLVG--LLAVLIALVIGVLlgllagYFGGWVDAVLMRLVDVLLAFPSLLLAIALV----AVLGP-- 139

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 981316994  88 GVWAAVVPLSIAAIPFFARV--AEVsLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALI 158
Cdd:COG1173  140 GLLNVILALGLTGWPGYARLvrAQV-LSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAI 211
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 13-203 3.60e-09

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 54.21  E-value: 3.60e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  13 MRDTLSMVAASAAIAALVGTPLAVILVttapggiYARRGLNTALGAIVNVFRSTPFIILLVALLPFTRVLIGTTIG---V 89
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILA-------RKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglG 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  90 WAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIGSTAMAGAVGA 169
Cdd:cd06261   74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153

                        170       180       190
                 ....*....|....*....|....*....|....
gi 981316994 170 GGLGDLAIRYGYQRFDTTVMATVIVILIALVSAV 203
Cdd:cd06261  154 GEAPGPGTGLLLIFAILFPGDLGVAAAVALILLL 187
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 45-203 3.74e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 54.23  E-value: 3.74e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994   45 GIYARRGLNTALGAIVNVFRSTPFIILLVALLPFTRVLIgTTIGVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAAL 124
Cdd:pfam00528   9 ALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSI-LGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAAR 87

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 981316994  125 AMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIGSTAMAGAVGAGGLGDLAIRYGYQRFDTTVMATVIVILIALVSAV 203
Cdd:pfam00528  88 ALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLL 166
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 4-159 4.33e-09

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 54.77  E-value: 4.33e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994   4 LWWPELLDAMRDTLSMVAASAAIAALVGTPLAVILVTTapggiyarRGLNTALGAIVNVFRSTPFIillvALLPFTRVLI 83
Cdd:COG0600   54 LASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLS--------RLLRRLLDPLLVFLRPIPPL----ALAPLLILWF 121

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 981316994  84 GttIGVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITV-VALIG 159
Cdd:COG0600  122 G--IGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALgLAWIG 196
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 47-150 2.49e-08

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 52.78  E-value: 2.49e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  47 YARRGLNTALGAIVNVFRSTPFIIL----LVALLPFTRVLI---GTTIGVWAAVVPLSIAAIPFFARVAEVSLREVDRGL 119
Cdd:COG0573  107 YAPPRLRRILKPAIELLAGIPSVVYgfwgLFVLVPLLRDLFpwpPSGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSL 186

                         90       100       110
                 ....*....|....*....|....*....|.
gi 981316994 120 IEAALAMGAKRRHIVWHVLLPEALPGMLGGF 150
Cdd:COG0573  187 REAALALGATRWETIRKVVLPAARSGIIAAV 217
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 82-153 2.55e-08

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 52.83  E-value: 2.55e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 981316994  82 LIGTTIGVWAAVVplsIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTIT 153
Cdd:COG0555  132 VAFTPLGIVLAQT---FVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALA 200
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 7-150 2.71e-07

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 49.72  E-value: 2.71e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994   7 PELLDAMRDTLSMVAASAAIAALVGTPLAVILVttapggiYARRGLNTALGAIVNVFRSTPFIILLVALLPFTrVLIGTT 86
Cdd:COG1177   57 PRLLDALLNSLLIALLSTLLATVLGTPAALALA-------RYRFRGRRLLLALLLLPLVVPGIVLGVALLLLF-SALGLS 128

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 981316994  87 IGVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGF 150
Cdd:COG1177  129 GGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGA 192
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 84-161 2.07e-06

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 47.26  E-value: 2.07e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 981316994   84 GTTIGVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIGST 161
Cdd:TIGR02138 146 LFGGPILTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRALGET 223
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
4-160 6.65e-06

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 45.92  E-value: 6.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994   4 LWWPELLDAMRDTLSMVAASAAIAALVGTPLAVILVTTApggIYARRGLNTALG------------AIVNVFRSTPFI-I 70
Cdd:COG1178   47 LSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTD---FPGRRLLRWLLLlplalppyvvalAWIALFGPNGLLnT 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  71 LLVALLPFTRVLIGttiGVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGF 150
Cdd:COG1178  124 LLRALFGLEPPDIY---GLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGA 200

                        170
                 ....*....|
gi 981316994 151 TITVVALIGS 160
Cdd:COG1178  201 LLVFLLCLAD 210
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 6-148 1.88e-05

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 44.30  E-value: 1.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994   6 WPELLDAMRDTLSMVAASAAIAALVGTPLAVIlvttAPGGIYARRGLNTALGAIVNVFRSTPFIILlvALLpFTRVLigt 85
Cdd:COG3639   46 LPDLLSALLETLAIALLGTLLGAVLALPLAFL----AARNLAPNPWVRLLARRLLNVLRAIPELVW--ALI-FVAAV--- 115

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 981316994  86 TIGVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLG 148
Cdd:COG3639  116 GLGPFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLS 178
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 90-160 2.36e-05

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 43.98  E-value: 2.36e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 981316994  90 WAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIGS 160
Cdd:COG1176  155 FAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGA 225
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 6-148 3.56e-05

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 43.30  E-value: 3.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994    6 WPELLDAMRDTLSMVAASAAIAALVGTPLAVIlvttAPGGIYARRGLNTALGAIVNVFRSTPFIILlvALLpftrVLIGT 85
Cdd:TIGR01097  53 LPRILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIPELVW--ALI----FVAAV 122

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 981316994   86 TIGVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLG 148
Cdd:TIGR01097 123 GLGPFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLS 185
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 60-147 2.90e-04

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 40.42  E-value: 2.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  60 VNVFRSTPfIILLVALLPFTRVLIGTTI---GVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWH 136
Cdd:PRK09494  59 IELIRGTP-IVVQVMFIYFALPMAFNDLridPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRY 137

                         90
                 ....*....|.
gi 981316994 137 VLLPEALPGML 147
Cdd:PRK09494 138 VIGPLALRRML 148
cysT CHL00187
sulfate transport protein; Provisional
 81-159 5.89e-04

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 39.61  E-value: 5.89e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 981316994  81 VLIGTTIGVWAAVVPLSIaaiPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIG 159
Cdd:CHL00187 132 QIVFTKLGVLLAMIFVSF---PFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIG 207
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-150 9.89e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 39.37  E-value: 9.89e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994   2 FELWWPELLDAMRDTLSMVAASAAIAALVGTPLAVILVTTapggiyaRRGLNTALGAIVNVFRSTPFIILLVALLPFTRV 81
Cdd:COG1178  329 FVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRR-------RGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNR 401

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 981316994  82 LIGTTIGVWAAVVPL--SIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGF 150
Cdd:COG1178  402 PLPLLLYGTLAILVLayVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAA 472
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 8-153 6.39e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 36.50  E-value: 6.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994   8 ELLDAMRDTLSMVAASAAIAALVGTPLAVILVTtapggiYARRGlNTALGAIVNVFRSTPFIILLVALLPFTrVLIGTTI 87
Cdd:PRK09500  54 SLLQAAQHSLTMAVFSATFATLIGSLTAVALYR------YRFRG-KKFVSGMLFVVMMSPDIVMAISLLVLF-MLLGIQL 125

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  88 GVWAAVVPLSIAAIPFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGG----FTIT 153
Cdd:PRK09500 126 GFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGwllsFTLS 195
pstA PRK11268
phosphate ABC transporter permease PstA;
29-161 8.89e-03

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 36.20  E-value: 8.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994  29 LVGTPLAVIlvttapGGIY-ARRGLNTALGAIV----NVFRSTPFIIllVALLPFTRVL--IGTTIGvWAAVVPLSIAAI 101
Cdd:PRK11268  95 VVGTPLGIM------AGIYlAEYGRKSWLAEVIrfinDILLSAPSIV--VGLFVYTIVVaqMEHFSG-WAGVIALALLQI 165

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 981316994 102 PFFARVAEVSLREVDRGLIEAALAMGAKRRHIVWHVLLPEALPGMLGGFTITVVALIGST 161
Cdd:PRK11268 166 PIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAGET 225
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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