|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1-646 |
0e+00 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 755.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDEL 80
Cdd:PRK10535 1 MTALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARTRREHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALI 160
Cdd:PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 161 NGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIELRDGEIISDSGSCVS---VTKTWRQ 237
Cdd:PRK10535 161 NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKvnvAGGTEPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 238 TNSIrqSYWQTLFDRTRESLQMALKAMNAHRLRTTLTMIGIIFGIAAVVTVVALGEGAKQKTLEEIKSLGTNVVRIYPGR 317
Cdd:PRK10535 241 VNTA--SGWRQFVSGFREALTMAWRAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRAIGTNTIDIYPGK 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 318 DFFDDSVESIRTLIPADADALAKQGFVDSVSPEVSTSDNIRFLGKSAMASINGVGREHFRVKGIELLQGTTFRDD--RNA 395
Cdd:PRK10535 319 DFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQSLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGNTFNQEqlNGR 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 396 LQEVIIDENTRKAIFDDAGlQALGQIILLGSVPARVVGIA--RSSDYSDmPNRITVWMPYSTVMYRMVGKPVLSSISVRL 473
Cdd:PRK10535 399 AQVVVLDSNTRRQLFPHKA-DVVGEVILVGNMPATVIGVAeeKQSMFGS-SKVLRVWLPYSTMSGRVMGQSWLNSITVRV 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 474 KDNVNNEAAISAISQLLTRRHGVKDFQVYNFEQIKKSVERTSMTFSILILMVASISLMIGSIGVMNIMLVSVTERTHEIG 553
Cdd:PRK10535 477 KEGYDSAEAEQQLTRLLTLRHGKKDFFTWNMDSVLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIG 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 554 VRMAVGARYGDIMQQFIIEAVLVCLIGGALGIALSYATGMLFtalgdEMF----TVIYSWQAAVTAFFCSTLIGMIFGYL 629
Cdd:PRK10535 557 IRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTL-----QLFlpgwEIGFSPLALLSAFLCSTVTGILFGWL 631
|
650
....*....|....*..
gi 979479175 630 PARKAARMDPIISLASE 646
Cdd:PRK10535 632 PARNAARLDPVDALARE 648
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-226 |
5.14e-127 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 373.99 E-value: 5.14e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDEL 80
Cdd:COG1136 1 MSPLLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSEREL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARTRREHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALI 160
Cdd:COG1136 81 ARLRRRHIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALV 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 161 NGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVARHAKRIIELRDGEIISDSG 226
Cdd:COG1136 161 NRPKLILADEPTGNLDSKTGEEVLELLRELNReLGTTIVMVTHDPELAARADRVIRLRDGRIVSDER 227
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
5-221 |
6.58e-116 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 345.24 E-value: 6.58e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARTR 84
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVARHAKRIIELRDGEI 221
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKeAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
|
| SalY |
COG0577 |
ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]; |
255-646 |
1.06e-86 |
|
ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms];
Pssm-ID: 440342 [Multi-domain] Cd Length: 339 Bit Score: 274.47 E-value: 1.06e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 255 ESLQMALKAMNAHRLRTTLTMIGIIFGIAAVVTVVALGEGAKQKTLEEIKSLGTNVVRIYPGRDffddsvESIRTLIPAD 334
Cdd:COG0577 1 EYLRLALRSLRRNKLRSLLTVLGIAIGIALVIAILALGRGLRRSLLRDLDSLGFDLLTVSRTPG------GSRATLSYED 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 335 A-DALAKQGFVDSVSPEVSTSDNIRFLG-KSAMASINGVGREHFRVKGIELLQGTTFR--DDRNALQEVIIDENTRKAIF 410
Cdd:COG0577 75 LrEALRALPGVESVAPSSSGSATVRYGGgEPPSVRVLGVDPDYFRVLGIPLLAGRFFTaaDDLGAPPVVVIGEALARRLF 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 411 DDAglQALGQIILLGSVPARVVGIArssdysdmpnritvwmpystvmyrmvgkpvlssisvrlkdnvnneaaISAISQLL 490
Cdd:COG0577 155 GGE--DPVGKTIRLNGRPFTVVGVV-----------------------------------------------EAELRALL 185
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 491 TRRHGVKDFQVYNFEQIKKSVERTSMTFSILILMVASISLMIGSIGVMNIMLVSVTERTHEIGVRMAVGARYGDIMQQFI 570
Cdd:COG0577 186 RRRDPGDDFEVQTLDEILAALYGVLRTLTLLLGAIAGLALLVACIGIMNLMLASVTERTREIGIRKALGASRRDILRQFL 265
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 571 IEAVLVCLIGGALGIALSYATGMLFTALGDemFTVIYSWQAAVTAFFCSTLIGMIFGYLPARKAARMDPIISLASE 646
Cdd:COG0577 266 TEALLLALLGGLLGLLLALLLLRLLAALLG--LPVSLDPWVLLLALALSLLVGLLAGLYPARRAARLDPVEALRSE 339
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
4-225 |
6.37e-83 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 260.44 E-value: 6.37e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELART 83
Cdd:COG4181 8 IIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTLLGLLAGLDRPTSGTVRLAGQDLFALDEDARARL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREHIGFIFQRYHLIPDLSALGNVEIPAIYANsERGSRRMyATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGG 163
Cdd:COG4181 88 RARHVGFVFQSFQLLPTLTALENVMLPLELAG-RRDARAR-ARALLERVGLGHRLDHYPAQLSGGEQQRVALARAFATEP 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 164 EIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVARHAKRIIELRDGEIISDS 225
Cdd:COG4181 166 AILFADEPTGNLDAATGEQIIDLLFELNReRGTTLVLVTHDPALAARCDRVLRLRAGRLVEDT 228
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
4-224 |
1.29e-80 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 254.21 E-value: 1.29e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELART 83
Cdd:COG2884 1 MIRFENVSKRYPGG---REALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRLKRREIPYL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RReHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGG 163
Cdd:COG2884 78 RR-RIGVVFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 164 EIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEIISD 224
Cdd:COG2884 157 ELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDLElVDRMPKRVLELEDGRLVRD 218
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
3-224 |
3.66e-72 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 233.03 E-value: 3.66e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 3 KIIELKGISRTYGNGsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELAR 82
Cdd:COG3638 1 PMLELRNLSKRYPGG---TPALDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVEPTSGEILVDGQDVTALRGRALRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 TRREhIGFIFQRYHLIPDLSALGNVEIPAI-YANSERGSRRMY-------ATALLGRLGLKGREHHKPSELSGGQQQRVS 154
Cdd:COG3638 78 LRRR-IGMIFQQFNLVPRLSVLTNVLAGRLgRTSTWRSLLGLFppedrerALEALERVGLADKAYQRADQLSGGQQQRVA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 155 IARALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVAR-HAKRIIELRDGEIISD 224
Cdd:COG3638 157 IARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAReDGITVVVNLHQVDLARrYADRIIGLRDGRVVFD 228
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
7-216 |
2.56e-69 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 224.03 E-value: 2.56e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 7 LKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARTRRE 86
Cdd:TIGR03608 1 LKNISKKFGD----KVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRRE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 87 HIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEII 166
Cdd:TIGR03608 77 KLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLI 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 979479175 167 LADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIEL 216
Cdd:TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-203 |
8.05e-66 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 216.88 E-value: 8.05e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDel 80
Cdd:COG1116 4 AAPALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDGKPVTGPGPD-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 artrrehIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALI 160
Cdd:COG1116 82 -------RGVVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALA 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 979479175 161 NGGEIILADEPTGALDSQSGL----EVLAILSElnrHGHTVVMVTHD 203
Cdd:COG1116 155 NDPEVLLMDEPFGALDALTRErlqdELLRLWQE---TGKTVLFVTHD 198
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
4-222 |
4.49e-65 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 213.98 E-value: 4.49e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELaRT 83
Cdd:cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKEL-RK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGG 163
Cdd:cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 164 EIILADEPTGALDSQSGLEVLAILSELNRH-GHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRElGLTIVLITHEMEVVKRiCDRVAVMEKGEVV 220
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
4-222 |
8.43e-64 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 210.62 E-value: 8.43e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAaHLSPDELART 83
Cdd:COG1126 1 MIEIENLHKSFGD----LEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDL-TDSKKDINKL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREhIGFIFQRYHLIPDLSALGNVEIPAIYAnseRG-SR---RMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARAL 159
Cdd:COG1126 76 RRK-VGMVFQQFNLFPHLTVLENVTLAPIKV---KKmSKaeaEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARAL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 160 INGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:COG1126 152 AMEPKVMLFDEPTSALDPELVGEVLDVMRDLAKEGMTMVVVTHEMGFAREvADRVVFMDGGRIV 215
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
4-222 |
1.20e-63 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 213.79 E-value: 1.20e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELART 83
Cdd:COG1135 1 MIELENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLTALSERELRAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RReHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGG 163
Cdd:COG1135 81 RR-KIGMIFQHFNLLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 164 EIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:COG1135 160 KVLLCDEATSALDPETTRSILDLLKDINReLGLTIVLITHEMDVVRRiCDRVAVLENGRIV 220
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
5-224 |
3.37e-63 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 208.48 E-value: 3.37e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDelartr 84
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPD------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 rehIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:cd03293 75 ---RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 165 IILADEPTGALDSQS----GLEVLAILSElnrHGHTVVMVTHDMTVARH-AKRIIEL--RDGEIISD 224
Cdd:cd03293 152 VLLLDEPFSALDALTreqlQEELLDIWRE---TGKTVLLVTHDIDEAVFlADRVVVLsaRPGRIVAE 215
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
5-232 |
5.44e-62 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 205.88 E-value: 5.44e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELaRTR 84
Cdd:cd03256 1 IEVENLSKTYPNG---KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAL-RQL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPAI-YANSERGSRRMY-------ATALLGRLGLKGREHHKPSELSGGQQQRVSIA 156
Cdd:cd03256 77 RRQIGMIFQQFNLIERLSVLENVLSGRLgRRSTWRSLFGLFpkeekqrALAALERVGLLDKAYQRADQLSGGQQQRVAIA 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 157 RALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVAR-HAKRIIELRDGEIISDsGSCVSVT 232
Cdd:cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINReEGITVIVSLHQVDLAReYADRIVGLKDGRIVFD-GPPAELT 233
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
4-220 |
1.01e-61 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 204.40 E-value: 1.01e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELART 83
Cdd:TIGR02673 1 MIEFHNVSKAYPGGVAA---LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RReHIGFIFQRYHLIPDLSALGNVEIP--AIYANSERGSRRMYATalLGRLGLKGREHHKPSELSGGQQQRVSIARALIN 161
Cdd:TIGR02673 78 RR-RIGVVFQDFRLLPDRTVYENVALPleVRGKKEREIQRRVGAA--LRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 162 GGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGE 220
Cdd:TIGR02673 155 SPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSlVDRVAHRVIILDDGR 214
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
10-221 |
1.22e-61 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 204.66 E-value: 1.22e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 10 ISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARTRREHIG 89
Cdd:PRK11629 11 LCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 90 FIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILAD 169
Cdd:PRK11629 91 FIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLAD 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 979479175 170 EPTGALDSQSGLEVLAILSELN-RHGHTVVMVTHDMTVARHAKRIIELRDGEI 221
Cdd:PRK11629 171 EPTGNLDARNADSIFQLLGELNrLQGTAFLVVTHDLQLAKRMSRQLEMRDGRL 223
|
|
| ABC_ATP_DarD |
NF038007 |
darobactin export ABC transporter ATP-binding protein; |
23-221 |
1.02e-60 |
|
darobactin export ABC transporter ATP-binding protein;
Pssm-ID: 411600 [Multi-domain] Cd Length: 218 Bit Score: 201.87 E-value: 1.02e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 23 VLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARTRREHIGFIFQRYHLIPDLS 102
Cdd:NF038007 20 VLNHLNFSVEKGDFVSIMGPSGSGKSTLLNIIGMFDSLDSGSLTLAGKEVTNLSYSQKIILRRELIGYIFQSFNLIPHLS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 103 ALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLE 182
Cdd:NF038007 100 IFDNVALPLKYRGVAKKERIERVNQVLNLFGIDNRRNHKPMQLSGGQQQRVAIARAMVSNPALLLADEPTGNLDSKNARA 179
|
170 180 190
....*....|....*....|....*....|....*....
gi 979479175 183 VLAILSELNRHGHTVVMVTHDMTVARHAKRIIELRDGEI 221
Cdd:NF038007 180 VLQQLKYINQKGTTIIMVTHSDEASTYGNRIINMKDGKL 218
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
5-221 |
1.40e-58 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 195.83 E-value: 1.40e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHlsPDELARTR 84
Cdd:cd03262 1 IEIKNLHKSFGD----FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTD--DKKNINEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPAIYAnseRGSRRMYATA----LLGRLGLKGREHHKPSELSGGQQQRVSIARALI 160
Cdd:cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKV---KGMSKAEAEEraleLLEKVGLADKADAYPAQLSGGQQQRVAIARALA 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 161 NGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARH-AKRIIELRDGEI 221
Cdd:cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREvADRVIFMDDGRI 213
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
3-221 |
9.13e-57 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 191.53 E-value: 9.13e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 3 KIIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELAR 82
Cdd:PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 TRREHIGFIFQRYHLIPDLSALGNVEIPAIY-ANSERGSRRMyATALLGRLGLKGREHHKPSELSGGQQQRVSIARALIN 161
Cdd:PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLrGESSRQSRNG-AKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 162 GGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVARHAKRIIELRDGEI 221
Cdd:PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNReHGTTLILVTHDLQLAARCDRRLRLVNGQL 224
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
4-224 |
3.38e-56 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 190.69 E-value: 3.38e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGngsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAahLSPDELART 83
Cdd:PRK09493 1 MIEFKNVSKHFG----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV--NDPKVDERL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREHIGFIFQRYHLIPDLSALGNVEI-PAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALING 162
Cdd:PRK09493 75 IRQEAGMVFQQFYLFPHLTALENVMFgPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 163 GEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARH-AKRIIELRDGEIISD 224
Cdd:PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKvASRLIFIDKGRIAED 217
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
4-224 |
9.95e-55 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 186.74 E-value: 9.95e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELaRT 83
Cdd:TIGR02315 1 MLEVENLSKVYPNGKQA---LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKL-RK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREHIGFIFQRYHLIPDLSALGNVEIPAI-YANSERGSRRMY-------ATALLGRLGLKGREHHKPSELSGGQQQRVSI 155
Cdd:TIGR02315 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLgYKPTWRSLLGRFseedkerALSALERVGLADKAYQRADQLSGGQQQRVAI 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 156 ARALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVAR-HAKRIIELRDGEIISD 224
Cdd:TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKeDGITVIINLHQVDLAKkYADRIVGLKAGEIVFD 227
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
5-222 |
1.19e-54 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 185.42 E-value: 1.19e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGsqarTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPdelartR 84
Cdd:cd03259 1 LELKGLSKTYGSV----RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP------E 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHDMTVA-RHAKRIIELRDGEII 222
Cdd:cd03259 151 LLLLDEPLSALDAKLREELREELKELqRELGITTIYVTHDQEEAlALADRIAVMNEGRIV 210
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
5-222 |
1.90e-54 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 185.78 E-value: 1.90e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARTR 84
Cdd:cd03261 1 IELRGLTKSFGG----RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 ReHIGFIFQRYHLIPDLSALGNVEIPaIYANSERGSRRMYATAL--LGRLGLKGREHHKPSELSGGQQQRVSIARALING 162
Cdd:cd03261 77 R-RMGMLFQSGALFDSLTVFENVAFP-LREHTRLSEEEIREIVLekLEAVGLRGAEDLYPAELSGGMKKRVALARALALD 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 163 GEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDM-TVARHAKRIIELRDGEII 222
Cdd:cd03261 155 PELLLYDEPTAGLDPIASGVIDDLIRSLKKeLGLTSIMVTHDLdTAFAIADRIAVLYDGKIV 216
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
6-220 |
3.23e-54 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 184.21 E-value: 3.23e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 6 ELKGISRTYGNGsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARtrr 85
Cdd:cd03225 1 ELKNLSFSYPDG--ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 86 eHIGFIFQRyhliPDLSALGN-----VEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALI 160
Cdd:cd03225 76 -KVGLVFQN----PDDQFFGPtveeeVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 161 NGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGE 220
Cdd:cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLdLLLELADRVIVLEDGK 211
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-222 |
3.61e-54 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 185.18 E-value: 3.61e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDEL 80
Cdd:COG1127 2 SEPMIEVRNLTKSFGD----RVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARTRReHIGFIFQRYHLIPDLSALGNVEIPAIYAN--SERGSRRMyATALLGRLGLKGREHHKPSELSGGQQQRVSIARA 158
Cdd:COG1127 78 YELRR-RIGMLFQGGALFDSLTVFENVAFPLREHTdlSEAEIREL-VLEKLELVGLPGAADKMPSELSGGMRKRVALARA 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:COG1127 156 LALDPEILLYDEPTAGLDPITSAVIDELIRELRDeLGLTSVVVTHDLDSAFAiADRVAVLADGKII 221
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
5-224 |
5.28e-54 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 184.46 E-value: 5.28e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:COG1122 1 IELENLSFSYPGG---TPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDITKKNLREL---- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRyhliPD---------------LSALGnveipaiYANSERGSRrmyATALLGRLGLKGREHHKPSELSGGQ 149
Cdd:COG1122 74 RRKVGLVFQN----PDdqlfaptveedvafgPENLG-------LPREEIRER---VEEALELVGLEHLADRPPHELSGGQ 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 150 QQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGEIISD 224
Cdd:COG1122 140 KQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLdLVAELADRVIVLDDGRIVAD 215
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
5-221 |
6.33e-54 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 183.76 E-value: 6.33e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARTR 84
Cdd:cd03292 1 IEFINVTKTYPNGTAA---LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 ReHIGFIFQRYHLIPDLSALGNVEIP--AIYANSERGSRRMyaTALLGRLGLKGREHHKPSELSGGQQQRVSIARALING 162
Cdd:cd03292 78 R-KIGVVFQDFRLLPDRNVYENVAFAleVTGVPPREIRKRV--PAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNS 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 163 GEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEI 221
Cdd:cd03292 155 PTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKElVDTTRHRVIALERGKL 214
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
5-224 |
1.16e-53 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 183.73 E-value: 1.16e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNaahlsPDELARTR 84
Cdd:COG1131 1 IEVRGLTKRYGD----KTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGED-----VARDPAEV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:COG1131 72 RRRIGYVPQEPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPE 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEIISD 224
Cdd:COG1131 152 LLILDEPTSGLDPEARRELWELLRELAAEGKTVLLSTHYLEeAERLCDRVAIIDKGRIVAD 212
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
5-220 |
1.62e-53 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 181.23 E-value: 1.62e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAhlSPDELARTR 84
Cdd:cd03229 1 LELKNVSKRYGQ----KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT--DLEDELPPL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPaiyansergsrrmyatallgrlglkgrehhkpseLSGGQQQRVSIARALINGGE 164
Cdd:cd03229 75 RRRIGMVFQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPD 120
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELN-RHGHTVVMVTHDMTVARH-AKRIIELRDGE 220
Cdd:cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQaQLGITVVLVTHDLDEAARlADRVVVLRDGK 178
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-222 |
2.25e-52 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 184.15 E-value: 2.25e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRK-IIELKGISRTYGngsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDe 79
Cdd:COG3842 1 MAMpALELENVSKRYG----DVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDVTGLPPE- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 80 lartRReHIGFIFQRYHLIPDLSALGNVEIP---AIYANSERGSRrmyATALLGRLGLKGREHHKPSELSGGQQQRVSIA 156
Cdd:COG3842 76 ----KR-NVGMVFQDYALFPHLTVAENVAFGlrmRGVPKAEIRAR---VAELLELVGLEGLADRYPHQLSGGQQQRVALA 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 157 RALINGGEIILADEPTGALDSQS----GLEVLAILSELnrhGHTVVMVTHD----MTVARhakRIIELRDGEII 222
Cdd:COG3842 148 RALAPEPRVLLLDEPLSALDAKLreemREELRRLQREL---GITFIYVTHDqeeaLALAD---RIAVMNDGRIE 215
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-222 |
3.55e-52 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 187.80 E-value: 3.55e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYG-NGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELAR 82
Cdd:COG1123 260 LLEVRNLSKRYPvRGKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLRE 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 TRReHIGFIFQR-YH-LIPDLSALGNV-EIPAIYANSERGSRRMYATALLGRLGLkgREHHK---PSELSGGQQQRVSIA 156
Cdd:COG1123 340 LRR-RVQMVFQDpYSsLNPRMTVGDIIaEPLRLHGLLSRAERRERVAELLERVGL--PPDLAdryPHELSGGQRQRVAIA 416
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 157 RALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:COG1123 417 RALALEPKLLILDEPTSALDVSVQAQILNLLRDLQReLGLTYLFISHDLAVVRYiADRVAVMYDGRIV 484
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
4-222 |
1.82e-51 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 177.31 E-value: 1.82e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGcLDVPDKGDYFINGQNAAHLSpDELAR 82
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARaILG-LLKPTSGSIIFDGKDLLKLS-RRLRK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 TRREHIGFIFQRYH--LIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGL---KGREHHKPSELSGGQQQRVSIAR 157
Cdd:cd03257 79 IRRKEIQMVFQDPMssLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVglpEEVLNRYPHELSGGQRQRVAIAR 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 158 ALINGGEIILADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:cd03257 159 ALALNPKLLIADEPTSALDVSVQAQILDLLKKLqEELGLTLLFITHDLGVVAKiADRVAVMYAGKIV 225
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
5-222 |
2.83e-51 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 180.77 E-value: 2.83e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARTR 84
Cdd:PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 ReHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:PRK11153 82 R-QIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNRH-GHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRElGLTIVLITHEMDVVKRiCDRVAVIDAGRLV 220
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
5-222 |
3.52e-49 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 174.95 E-value: 3.52e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNA-AHLSPdelaRT 83
Cdd:COG1118 3 IEVRNISKRFGS----FTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLETPDSGRIVLNGRDLfTNLPP----RE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RRehIGFIFQRYHLIPDLSALGNVEI-PAIYANSERGSRRMyATALLGRLGLKGREHHKPSELSGGQQQRVSIARALING 162
Cdd:COG1118 75 RR--VGFVFQHYALFPHMTVAENIAFgLRVRPPSKAEIRAR-VEELLELVQLEGLADRYPSQLSGGQRQRVALARALAVE 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 163 GEIILADEPTGALDSQSGLEVLAILSELNRH-GHTVVMVTHDMTVA-RHAKRIIELRDGEII 222
Cdd:COG1118 152 PEVLLLDEPFGALDAKVRKELRRWLRRLHDElGGTTVFVTHDQEEAlELADRVVVMNQGRIE 213
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
5-222 |
4.11e-49 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 171.86 E-value: 4.11e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYgngsQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKG-----DYFINGqnAAHLSPDE 79
Cdd:PRK11264 4 IEVKNLVKKF----HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGtirvgDITIDT--ARSLSQQK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 80 -LARTRREHIGFIFQRYHLIPDLSALGNV-EIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIAR 157
Cdd:PRK11264 78 gLIRQLRQHVGFVFQNFNLFPHRTVLENIiEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIAR 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 158 ALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:PRK11264 158 ALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDvADRAIFMDQGRIV 223
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
5-221 |
5.57e-49 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 170.00 E-value: 5.57e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:COG4619 1 LELEGLSFRVGG----KPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAMPPPEW---- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDlsalgNVE--IPAIYANSERGSRRMYATALLGRLGLKGREHHKP-SELSGGQQQRVSIARALIN 161
Cdd:COG4619 73 RRQVAYVPQEPALWGG-----TVRdnLPFPFQLRERKFDRERALELLERLGLPPDILDKPvERLSGGERQRLALIRALLL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 162 GGEIILADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHDMT-VARHAKRIIELRDGEI 221
Cdd:COG4619 148 QPDVLLLDEPTSALDPENTRRVEELLREYlAEEGRAVLWVSHDPEqIERVADRVLTLEAGRL 209
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
4-224 |
5.98e-49 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 171.38 E-value: 5.98e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARt 83
Cdd:COG1120 1 MLEAENLSVGYGG----RPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASLSRRELAR- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 rreHIGFIFQRYHLIPDLSALGNVE------IPAIYANSERGSRRmyATALLGRLGLKGREHHKPSELSGGQQQRVSIAR 157
Cdd:COG1120 76 ---RIAYVPQEPPAPFGLTVRELVAlgryphLGLFGRPSAEDREA--VEEALERTGLEHLADRPVDELSGGERQRVLIAR 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 158 ALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVA-RHAKRIIELRDGEIISD 224
Cdd:COG1120 151 ALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLAReRGRTVVMVLHDLNLAaRYADRLVLLKDGRIVAQ 219
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-221 |
1.65e-48 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 169.88 E-value: 1.65e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDvPDKGDYFINGQNAAHlspde 79
Cdd:COG1121 3 MMPAIELENLTVSYGG----RPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKaILGLLP-PTSGTVRLFGKPPRR----- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 80 lartRREHIGFIFQRYHLIPD--LSALgnvEIPAIYANSERGSRRMY-------ATALLGRLGLKGREHHKPSELSGGQQ 150
Cdd:COG1121 73 ----ARRRIGYVPQRAEVDWDfpITVR---DVVLMGRYGRRGLFRRPsradreaVDEALERVGLEDLADRPIGELSGGQQ 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 151 QRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGEI 221
Cdd:COG1121 146 QRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLgAVREYFDRVLLLNRGLV 217
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
5-221 |
7.92e-46 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 162.41 E-value: 7.92e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGsqarTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDelartr 84
Cdd:cd03300 1 IELENVSKFYGGF----VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH------ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNRH-GHTVVMVTHD----MTVarhAKRIIELRDGEI 221
Cdd:cd03300 151 VLLLDEPLGALDLKLRKDMQLELKRLQKElGITFVFVTHDqeeaLTM---SDRIAVMNKGKI 209
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
5-222 |
1.38e-45 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 162.10 E-value: 1.38e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQN---AAHLSPDElA 81
Cdd:COG4161 3 IQLKNINCFYGS-HQA---LFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHQfdfSQKPSEKA-I 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 82 RTRREHIGFIFQRYHLIPDLSALGN-VEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALI 160
Cdd:COG4161 78 RLLRQKVGMVFQQYNLWPHLTVMENlIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALM 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 161 NGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:COG4161 158 MEPQVLLFDEPTAALDPEITAQVVEIIRELSQTGITQVIVTHEVEFARKvASQVVYMEKGRII 220
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-224 |
1.99e-45 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 168.93 E-value: 1.99e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNGsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTL-MNIMGCLDVPDK--GDYFINGQNAAHLSP 77
Cdd:COG1123 1 MTPLLEVRDLSVRYPGG--DVPAVDGVSLTIAPGETVALVGESGSGKSTLaLALMGLLPHGGRisGEVLLDGRDLLELSE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 78 DElartRREHIGFIFQ--RYHLIPdLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSI 155
Cdd:COG1123 79 AL----RGRRIGMVFQdpMTQLNP-VTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAI 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 156 ARALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDM-TVARHAKRIIELRDGEIISD 224
Cdd:COG1123 154 AMALALDPDLLIADEPTTALDVTTQAEILDLLRELQReRGTTVLLITHDLgVVAEIADRVVVMDDGRIVED 224
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-224 |
2.18e-45 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 161.51 E-value: 2.18e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPdelaRTR 84
Cdd:COG1124 2 LEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVTRRRR----KAF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLI--PDLS---ALGnvEIPAIYANSERGSRrmyATALLGRLGLKGREHHK-PSELSGGQQQRVSIARA 158
Cdd:COG1124 78 RRRVQMVFQDPYASlhPRHTvdrILA--EPLRIHGLPDREER---IAELLEQVGLPPSFLDRyPHQLSGGQRQRVAIARA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVARH-AKRIIELRDGEIISD 224
Cdd:COG1124 153 LILEPELLLLDEPTSALDVSVQAEILNLLKDLREeRGLTYLFVSHDLAVVAHlCDRVAVMQNGRIVEE 220
|
|
| HisP |
COG4598 |
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]; |
5-221 |
2.83e-45 |
|
ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443652 [Multi-domain] Cd Length: 259 Bit Score: 161.51 E-value: 2.83e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGngsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQnAAHLSPD------ 78
Cdd:COG4598 9 LEVRDLHKSFG----DLEVLKGVSLTARKGDVISIIGSSGSGKSTFLRCINLLETPDSGEIRVGGE-EIRLKPDrdgelv 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 79 -----ELARTRREhIGFIFQRYHLIPDLSALGNV-EIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQR 152
Cdd:COG4598 84 padrrQLQRIRTR-LGMVFQSFNLWSHMTVLENViEAPVHVLGRPKAEAIERAEALLAKVGLADKRDAYPAHLSGGQQQR 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 153 VSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARH-AKRIIELRDGEI 221
Cdd:COG4598 163 AAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMRDLAEEGRTMLVVTHEMGFARDvSSHVVFLHQGRI 232
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
5-220 |
3.13e-45 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 158.32 E-value: 3.13e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:cd03228 1 IEFKNVSFSYPGRP--KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESL---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDlSALGNVeipaiyansergsrrmyatallgrlglkgrehhkpseLSGGQQQRVSIARALINGGE 164
Cdd:cd03228 75 RKNIAYVPQDPFLFSG-TIRENI-------------------------------------LSGGQRQRIAIARALLRDPP 116
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELnRHGHTVVMVTHDMTVARHAKRIIELRDGE 220
Cdd:cd03228 117 ILILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
6-224 |
6.11e-45 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 157.98 E-value: 6.11e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 6 ELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARtrr 85
Cdd:cd03214 1 EVENLSVGYGG----RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELAR--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 86 eHIGFIFQryhlipdlsalgnveipaiyansergsrrmyATALLGRLGLKGREHhkpSELSGGQQQRVSIARALINGGEI 165
Cdd:cd03214 74 -KIAYVPQ-------------------------------ALELLGLAHLADRPF---NELSGGERQRVLLARALAQEPPI 118
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 166 ILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVA-RHAKRIIELRDGEIISD 224
Cdd:cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLAReRGKTVVMVLHDLNLAaRYADRVILLKDGRIVAQ 179
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
24-222 |
6.57e-45 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 160.89 E-value: 6.57e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARTRREHIGFIFQRYHLIPDLSA 103
Cdd:cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTV 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 104 LGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDS------ 177
Cdd:cd03294 120 LENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPlirrem 199
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 979479175 178 QSglEVLAILSELNRhghTVVMVTHDMTVA-RHAKRIIELRDGEII 222
Cdd:cd03294 200 QD--ELLRLQAELQK---TIVFITHDLDEAlRLGDRIAIMKDGRLV 240
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
5-222 |
1.15e-44 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 159.41 E-value: 1.15e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQN---AAHLSPDELA 81
Cdd:PRK11124 3 IQLNGINCFYGA-HQA---LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHfdfSKTPSDKAIR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 82 RTRREhIGFIFQRYHLIPDLSALGN-VEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALI 160
Cdd:PRK11124 79 ELRRN-VGMVFQQYNLWPHLTVQQNlIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 161 NGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKtASRVVYMENGHIV 220
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
5-222 |
1.23e-43 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 156.69 E-value: 1.23e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:cd03295 1 IEFENVTKRYGGGKKA---VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVEL---- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGRE--HHKPSELSGGQQQRVSIARALING 162
Cdd:cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEfaDRYPHELSGGQQQRVGVARALAAD 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 163 GEIILADEPTGALD--SQSGL--EVLAILSELnrhGHTVVMVTHDMTVA-RHAKRIIELRDGEII 222
Cdd:cd03295 154 PPLLLMDEPFGALDpiTRDQLqeEFKRLQQEL---GKTIVFVTHDIDEAfRLADRIAIMKNGEIV 215
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
5-221 |
2.47e-43 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 159.08 E-value: 2.47e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDElartR 84
Cdd:COG3839 4 LELENVSKSYGG----VEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLEDPTSGEILIGGRDVTDLPPKD----R 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 RehIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:COG3839 76 N--IAMVFQSYALYPHMTVYENIAFPLKLRKVPKAEIDRRVREAAELLGLEDLLDRKPKQLSGGQRQRVALGRALVREPK 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHD----MTVARhakRIIELRDGEI 221
Cdd:COG3839 154 VFLLDEPLSNLDAKLRVEMRAEIKRLhRRLGTTTIYVTHDqveaMTLAD---RIAVMNDGRI 212
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
4-221 |
7.66e-43 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 153.88 E-value: 7.66e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELART 83
Cdd:PRK10908 1 MIRFEHVSKAYLGGRQA---LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREhIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGG 163
Cdd:PRK10908 78 RRQ-IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKP 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 164 EIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEI 221
Cdd:PRK10908 157 AVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGlISRRSYRMLTLSDGHL 215
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
5-222 |
2.27e-42 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 161.08 E-value: 2.27e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:COG4988 337 IELEDVSFSYPGG---RPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILINGVDLSDLDPASW---- 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLI------------PDLS------ALGNVEIPAIYANSERGsrrmYATallgRLGLKGREhhkpseLS 146
Cdd:COG4988 410 RRQIAWVPQNPYLFagtirenlrlgrPDASdeeleaALEAAGLDEFVAALPDG----LDT----PLGEGGRG------LS 475
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 147 GGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELnRHGHTVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:COG4988 476 GGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRL-AKGRTVILITHRLALLAQADRILVLDDGRIV 550
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
5-221 |
2.69e-42 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 150.63 E-value: 2.69e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNaahlsPDELARTR 84
Cdd:cd03230 1 IEVRNLSKRYGK----KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKD-----IKKEPEEV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEipaiyansergsrrmyatallgrlglkgrehhkpseLSGGQQQRVSIARALINGGE 164
Cdd:cd03230 72 KRRIGYLPEEPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPE 115
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVA-RHAKRIIELRDGEI 221
Cdd:cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAeRLCDRVAILNNGRI 173
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
5-224 |
3.31e-42 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 152.22 E-value: 3.31e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqartVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDElartr 84
Cdd:COG3840 2 LRLDDLTYRYGD------FPLRFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDLTALPPAE----- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REhIGFIFQRYHLIPDLSALGNVEI---PAIYANSERGSRrmyATALLGRLGLKGREHHKPSELSGGQQQRVSIARALIN 161
Cdd:COG3840 71 RP-VSMLFQENNLFPHLTVAQNIGLglrPGLKLTAEQRAQ---VEQALERVGLAGLLDRLPGQLSGGQRQRVALARCLVR 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 162 GGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVARH-AKRIIELRDGEIISD 224
Cdd:COG3840 147 KRPILLLDEPFSALDPALRQEMLDLVDELCReRGLTVLMVTHDPEDAARiADRVLLVADGRIAAD 211
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
5-224 |
4.52e-42 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 152.21 E-value: 4.52e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGngsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARTR 84
Cdd:cd03219 1 LEVRGLTKRFG----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 rehIGFIFQRYHLIPDLSALGNVEIPA-----------IYANSERGSRRmYATALLGRLGLKGREHHKPSELSGGQQQRV 153
Cdd:cd03219 77 ---IGRTFQIPRLFPELTVLENVMVAAqartgsglllaRARREEREARE-RAEELLERVGLADLADRPAGELSYGQQRRL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 154 SIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEIISD 224
Cdd:cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDvVMSLADRVTVLDQGRVIAE 224
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
5-222 |
4.94e-42 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 151.56 E-value: 4.94e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTL---MNIMGCLD--VPDKGDYFINGQNAAHLSPDE 79
Cdd:cd03260 1 IELRDLNVYYGD----KHALKDISLDIPKGEITALIGPSGCGKSTLlrlLNRLNDLIpgAPDEGEVLLDGKDIYDLDVDV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 80 LARTRRehIGFIFQRYHLIPdLSALGNVEipaiYANSERGSRRMYATA-----LLGRLGLKGREHHK--PSELSGGQQQR 152
Cdd:cd03260 77 LELRRR--VGMVFQKPNPFP-GSIYDNVA----YGLRLHGIKLKEELDerveeALRKAALWDEVKDRlhALGLSGGQQQR 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 153 VSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHgHTVVMVTHDM-TVARHAKRIIELRDGEII 222
Cdd:cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMqQAARVADRTAFLLNGRLV 219
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
6-222 |
7.41e-42 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 150.76 E-value: 7.41e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 6 ELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDvPDKGDYFINGQNAahlspdelaRTR 84
Cdd:cd03235 1 EVEDLTVSYGG----HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKaILGLLK-PTSGSIRVFGKPL---------EKE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHL-------IPDLSALGNV-EIPAIYANSERGSRRmyATALLGRLGLKGREHHKPSELSGGQQQRVSIA 156
Cdd:cd03235 67 RKRIGYVPQRRSIdrdfpisVRDVVLMGLYgHKGLFRRLSKADKAK--VDEALERVGLSELADRQIGELSGGQQQRVLLA 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 157 RALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELrDGEII 222
Cdd:cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLgLVLEYFDRVLLL-NRTVV 210
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
6-220 |
9.47e-42 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 148.55 E-value: 9.47e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 6 ELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartrR 85
Cdd:cd00267 1 EIENLSFRYGG----RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL----R 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 86 EHIGFIFQryhlipdlsalgnveipaiyansergsrrmyatallgrlglkgrehhkpseLSGGQQQRVSIARALINGGEI 165
Cdd:cd00267 73 RRIGYVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDL 101
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 166 ILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGE 220
Cdd:cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPeLAELAADRVIVLKDGK 157
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
4-214 |
1.18e-41 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 153.67 E-value: 1.18e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDVP--DKGDYFINGQNAAHLSPDEL 80
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARaILGLLPPPgiTSGEILFDGEDLLKLSEKEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARTRREHIGFIFQryhlipD-LSALgN---------VEIPAIYANSERGSRRMYATALLGRLGLKGREHHK---PSELSG 147
Cdd:COG0444 81 RKIRGREIQMIFQ------DpMTSL-NpvmtvgdqiAEPLRIHGGLSKAEARERAIELLERVGLPDPERRLdryPHELSG 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 148 GQQQRVSIARALINGGEIILADEPTGALD--SQSglEVLAILSELNR-HGHTVVMVTHDMTVARH-AKRII 214
Cdd:COG0444 154 GMRQRVMIARALALEPKLLIADEPTTALDvtIQA--QILNLLKDLQReLGLAILFITHDLGVVAEiADRVA 222
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
5-222 |
1.24e-41 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 159.16 E-value: 1.24e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDvPDKGDYFINGQNAAHLSPDELart 83
Cdd:COG4987 334 LELEDVSFRYPG--AGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLAlLLRFLD-PQSGSITLGGVDLRDLDEDDL--- 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 rREHIGFIFQRYHLI------------PDLS------ALGNVEIPAIYANSERGsrrmyataLLGRLGLKGRehhkpsEL 145
Cdd:COG4987 408 -RRRIAVVPQRPHLFdttlrenlrlarPDATdeelwaALERVGLGDWLAALPDG--------LDTWLGEGGR------RL 472
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 146 SGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELnRHGHTVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:COG4987 473 SGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEA-LAGRTVLLITHRLAGLERMDRILVLEDGRIV 548
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
5-218 |
1.39e-41 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 149.55 E-value: 1.39e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNaahlsPDELARTR 84
Cdd:COG4133 3 LEAENLSCRRGE----RLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEP-----IRDAREDY 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPAiyANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:COG4133 74 RRRLAYLGHADGLKPELTVRENLRFWA--ALYGLRADREAIDEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAP 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDmTVARHAKRIIELRD 218
Cdd:COG4133 152 LWLLDEPFTALDAAGVALLAELIAAHLARGGAVLLTTHQ-PLELAAARVLDLGD 204
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
5-222 |
4.36e-41 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 149.41 E-value: 4.36e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGsqarTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPdelartR 84
Cdd:cd03296 3 IEVRNVSKRFGDF----VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV------Q 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNV----EIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALI 160
Cdd:cd03296 73 ERNVGFVFQHYALFRHMTVFDNVafglRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 161 NGGEIILADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLhDELHVTTVFVTHDQEEALEvADRVVVMNKGRIE 216
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-203 |
2.58e-40 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 148.09 E-value: 2.58e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDElartr 84
Cdd:COG4525 4 LTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTGPGADR----- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 rehiGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:COG4525 79 ----GVVFQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPR 154
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHD 203
Cdd:COG4525 155 FLLMDEPFGALDALTREQMQELLLDVwQRTGKGVFLITHS 194
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-224 |
4.01e-40 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 153.64 E-value: 4.01e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGnGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPdelART 83
Cdd:COG1129 4 LLEMRGISKSFG-GVKA---LDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRFRSP---RDA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREHIGFIFQRYHLIPDLSALGNveipaIYANSERGS------RRMY--ATALLGRLGLKGREHHKPSELSGGQQQRVSI 155
Cdd:COG1129 77 QAAGIAIIHQELNLVPNLSVAEN-----IFLGREPRRgglidwRAMRrrARELLARLGLDIDPDTPVGDLSVAQQQLVEI 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 156 ARALINGGEIILADEPTGALDSQsglEV---LAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEIISD 224
Cdd:COG1129 152 ARALSRDARVLILDEPTASLTER---EVerlFRIIRRLKAQGVAIIYISHRLDeVFEIADRVTVLRDGRLVGT 221
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-224 |
7.59e-40 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 146.72 E-value: 7.59e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGngsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDE- 79
Cdd:COG0411 1 SDPLLEVRGLTKRFG----GLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDITGLPPHRi 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 80 ----LARTrrehigfiFQRYHLIPDLSALGNVEIPAI----------------YANSERGSRRmYATALLGRLGLKGREH 139
Cdd:COG0411 77 arlgIART--------FQNPRLFPELTVLENVLVAAHarlgrgllaallrlprARREEREARE-RAEELLERVGLADRAD 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 140 HKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMT-VARHAKRIIELR 217
Cdd:COG0411 148 EPAGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDeRGITILLIEHDMDlVMGLADRIVVLD 227
|
....*..
gi 979479175 218 DGEIISD 224
Cdd:COG0411 228 FGRVIAE 234
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
5-222 |
1.92e-39 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 145.00 E-value: 1.92e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSpdelaRTR 84
Cdd:COG4555 2 IEVENLSKKYGK----VPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEP-----REA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:COG4555 73 RRQIGVLPDERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPK 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGEII 222
Cdd:COG4555 153 VLLLDEPTNGLDVMARRLLREILRALKKEGKTVLFSSHIMqEVEALCDRVVILHKGKVV 211
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
5-224 |
1.97e-39 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 146.04 E-value: 1.97e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAahLSPDELaRTR 84
Cdd:TIGR04520 1 IEVENVSFSYPESE--KPALKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLLPTSGKVTVDGLDT--LDEENL-WEI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRyhliPD---LSA---------LGNVEIPaiyanSERGSRRMYAtaLLGRLGLKGREHHKPSELSGGQQQR 152
Cdd:TIGR04520 76 RKKVGMVFQN----PDnqfVGAtveddvafgLENLGVP-----REEMRKRVDE--ALKLVGMEDFRDREPHLLSGGQKQR 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 153 VSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVARHAKRIIELRDGEIISD 224
Cdd:TIGR04520 145 VAIAGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKeEGITVISITHDMEEAVLADRVIVMNKGKIVAE 217
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
5-224 |
3.50e-39 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 145.29 E-value: 3.50e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQ-ARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELART 83
Cdd:TIGR04521 1 IKLKNVSYIYQPGTPfEKKALDDVSLTIEDGEFVAIIGHTGSGKSTLIQHLNGLLKPTSGTVTIDGRDITAKKKKKLKDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RReHIGFIFQ--RYHLIPDlsalgnveipAIYANSERGSRRM---------YATALLGRLGLKgRE--HHKPSELSGGQQ 150
Cdd:TIGR04521 81 RK-KVGLVFQfpEHQLFEE----------TVYKDIAFGPKNLglseeeaeeRVKEALELVGLD-EEylERSPFELSGGQM 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 151 QRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRH-GHTVVMVTHDMT-VARHAKRIIELRDGEIISD 224
Cdd:TIGR04521 149 RRVAIAGVLAMEPEVLILDEPTAGLDPKGRKEILDLFKRLHKEkGLTVILVTHSMEdVAEYADRVIVMHKGKIVLD 224
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
7-221 |
4.47e-39 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 144.44 E-value: 4.47e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 7 LKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFingQNAAHLSpdelarTRRE 86
Cdd:PRK11247 15 LNAVSKRYGE----RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL---AGTAPLA------EARE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 87 HIGFIFQRYHLIPDLSALGNVEIpaiyanSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEII 166
Cdd:PRK11247 82 DTRLMFQDARLLPWKKVIDNVGL------GLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 167 LADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHDMTVA-RHAKRIIELRDGEI 221
Cdd:PRK11247 156 LLDEPLGALDALTRIEMQDLIESLwQQHGFTVLLVTHDVSEAvAMADRVLLIEEGKI 212
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
5-224 |
4.48e-39 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 153.45 E-value: 4.48e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQArtVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:COG2274 474 IELENVSFRYPGDSPP--VLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQIDPASL---- 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDlS-----ALGNVEIP---AIYAnsergSRRMYATALLGRL--GLkgreHHKPSE----LSGGQQ 150
Cdd:COG2274 548 RRQIGVVLQDVFLFSG-TireniTLGDPDATdeeIIEA-----ARLAGLHDFIEALpmGY----DTVVGEggsnLSGGQR 617
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 151 QRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELnRHGHTVVMVTHDMTVARHAKRIIELRDGEIISD 224
Cdd:COG2274 618 QRLAIARALLRNPRILILDEATSALDAETEAIILENLRRL-LKGRTVIIIAHRLSTIRLADRIIVLDKGRIVED 690
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1-227 |
7.34e-39 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 144.00 E-value: 7.34e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYgNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDK---------GDYFingQN 71
Cdd:PRK09984 1 MQTIIRVEKLAKTF-NQHQA---LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKsagshiellGRTV---QR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 72 AAHLSPDelARTRREHIGFIFQRYHLIPDLSALGNVEIPAI-----------YANSERGSRRMYAtalLGRLGLKGREHH 140
Cdd:PRK09984 74 EGRLARD--IRKSRANTGYIFQQFNLVNRLSVLENVLIGALgstpfwrtcfsWFTREQKQRALQA---LTRVGMVHFAHQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 141 KPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRH-GHTVVMVTHDMTVA-RHAKRIIELRD 218
Cdd:PRK09984 149 RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNdGITVVVTLHQVDYAlRYCERIVALRQ 228
|
....*....
gi 979479175 219 GEIISDSGS 227
Cdd:PRK09984 229 GHVFYDGSS 237
|
|
| LolE |
COG4591 |
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall ... |
430-646 |
7.61e-39 |
|
ABC-type transport system involved in lipoprotein release, permease component LolC [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443648 [Multi-domain] Cd Length: 283 Bit Score: 144.68 E-value: 7.61e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 430 RVVGIARSSDYSdmPNRITVWMPYSTVMYRMVGKPVLSSISVRLKDNVNNEAAISAISQLLtrrhgvKDFQVYNFEQIKK 509
Cdd:COG4591 69 TVVGIFESGGYE--LDGSLVYVPLETAQELLGLGDQVSGILVKLKDGADAEAVAAALEAAL------PGLEVKTWRELNA 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 510 SVERTSMTFSILILMVASISLMIGSIGVMNIMLVSVTERTHEIGVRMAVGARYGDIMQQFIIEAVLVCLIGGALGIALSY 589
Cdd:COG4591 141 ALFSALKTEKLILLLILLLILLVAAFNIVNTLLMSVLERTREIGILKALGASRRQIRRIFLLEGLLLGLIGGLLGLLLGL 220
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 590 ATGMLFTALGDEM------FTVIYSWQAAVTAFFCSTLIGMIFGYLPARKAARMDPIISLASE 646
Cdd:COG4591 221 LLALLLNALLGILlpfifaLPVSLSPSDVLLALLLALLISLLASLYPARRAARLDPVEALRGE 283
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
5-221 |
2.86e-38 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 140.85 E-value: 2.86e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDElartr 84
Cdd:cd03301 1 VELENVTKRFGN----VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 rEHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGS--RRMYATALLgrLGLKGREHHKPSELSGGQQQRVSIARALING 162
Cdd:cd03301 72 -RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEidERVREVAEL--LQIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 163 GEIILADEPTGALDSQSGLEVLAILSELN-RHGHTVVMVTHD----MTVarhAKRIIELRDGEI 221
Cdd:cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQqRLGTTTIYVTHDqveaMTM---ADRIAVMNDGQI 209
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
28-224 |
5.34e-38 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 139.94 E-value: 5.34e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 28 DLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDElartrrEHIGFIFQRYHLIPDLSALGNV 107
Cdd:cd03298 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPAD------RPVSMLFQENNLFAHLTVEQNV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 108 EI---PAIYANSERgsrRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVL 184
Cdd:cd03298 92 GLglsPGLKLTAED---RQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML 168
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 979479175 185 AILSELNRH-GHTVVMVTHDMTVARH-AKRIIELRDGEIISD 224
Cdd:cd03298 169 DLVLDLHAEtKMTVLMVTHQPEDAKRlAQRVVFLDNGRIAAQ 210
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
4-221 |
9.66e-38 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 144.32 E-value: 9.66e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDelart 83
Cdd:PRK09452 14 LVELRGISKSFDG----KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE----- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 rREHIGFIFQRYHLIPDLSALGNV-------EIPaiyaNSERGSRRMYATALLGrlgLKGREHHKPSELSGGQQQRVSIA 156
Cdd:PRK09452 85 -NRHVNTVFQSYALFPHMTVFENVafglrmqKTP----AAEITPRVMEALRMVQ---LEEFAQRKPHQLSGGQQQRVAIA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 157 RALINGGEIILADEPTGALDSQSGLEVLAILSELNRH-GHTVVMVTHDMTVA-RHAKRIIELRDGEI 221
Cdd:PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKlGITFVFVTHDQEEAlTMSDRIVVMRDGRI 223
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
1-221 |
1.06e-37 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 143.64 E-value: 1.06e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGngsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPdel 80
Cdd:TIGR03265 1 SSPYLSIDNIRKRFG----AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 arTRREHiGFIFQRYHLIPDLSALGNVEipaiYANSERGSRRMYATA----LLGRLGLKGREHHKPSELSGGQQQRVSIA 156
Cdd:TIGR03265 74 --QKRDY-GIVFQSYALFPNLTVADNIA----YGLKNRGMGRAEVAErvaeLLDLVGLPGSERKYPGQLSGGQQQRVALA 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 157 RALINGGEIILADEPTGALDSQSGLEVLAILSELNRH-GHTVVMVTHD----MTVarhAKRIIELRDGEI 221
Cdd:TIGR03265 147 RALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRlGVTTIMVTHDqeeaLSM---ADRIVVMNHGVI 213
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
23-221 |
1.91e-37 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 140.10 E-value: 1.91e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 23 VLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAaHLSPD-------------ELARTRrehIG 89
Cdd:PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTI-NLVRDkdgqlkvadknqlRLLRTR---LT 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 90 FIFQRYHLIPDLSALGNV-EIPAIYANSERGSRRMYATALLGRLGLKGREHHK-PSELSGGQQQRVSIARALINGGEIIL 167
Cdd:PRK10619 96 MVFQHFNLWSHMTVLENVmEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKyPVHLSGGQQQRVSIARALAMEPEVLL 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 168 ADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARH-AKRIIELRDGEI 221
Cdd:PRK10619 176 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHvSSHVIFLHQGKI 230
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
5-222 |
4.18e-37 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 135.63 E-value: 4.18e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGsqarTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPdelARTR 84
Cdd:cd03216 1 LELRGITKRFGGV----KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASP---RDAR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQryhlipdlsalgnveipaiyansergsrrmyatallgrlglkgrehhkpseLSGGQQQRVSIARALINGGE 164
Cdd:cd03216 74 RAGIAMVYQ---------------------------------------------------LSVGERQMVEIARALARNAR 102
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGEII 222
Cdd:cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLdEVFEIADRVTVLRDGRVV 161
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
5-224 |
4.58e-37 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 138.75 E-value: 4.58e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMgCLDV-PDKGDYFINGQNAAHLSPDELART 83
Cdd:PRK13548 3 LEARNLSVRLGG----RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL-SGELsPDSGEVRLNGRPLADWSPAELARR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 R---REH--IGFIFqryhLIPDLSALGNveipAIYANSERGSRRMYATAL--LGRLGLKGREHHkpsELSGGQQQRVSIA 156
Cdd:PRK13548 78 RavlPQHssLSFPF----TVEEVVAMGR----APHGLSRAEDDALVAAALaqVDLAHLAGRDYP---QLSGGEQQRVQLA 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 157 RALI------NGGEIILADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHDMTVA-RHAKRIIELRDGEIISD 224
Cdd:PRK13548 147 RVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLaHERGLAVIVVLHDLNLAaRYADRIVLLHQGRLVAD 222
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-219 |
4.83e-37 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 137.95 E-value: 4.83e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRT---YGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNimgCL---DVPDKGDYFINGQNA-- 72
Cdd:COG4778 1 MTTLLEVENLSKTftlHLQGGKRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLK---CIygnYLPDSGSILVRHDGGwv 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 73 --AHLSPDELARTRREHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHH-KPSELSGGQ 149
Cdd:COG4778 78 dlAQASPREILALRRRTIGYVSQFLRVIPRVSALDVVAEPLLERGVDREEARARARELLARLNLPERLWDlPPATFSGGE 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 150 QQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDG 219
Cdd:COG4778 158 QQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEAKARGTAIIGIFHDEeVREAVADRVVDVTPF 228
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-224 |
1.29e-36 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 137.55 E-value: 1.29e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIM-GCLDvPDKGDYFINGQNAAHLSPDELART 83
Cdd:COG4559 2 LEAENLSVRLGG----RTLLDDVSLTLRPGELTAIIGPNGAGKSTLLKLLtGELT-PSSGEVRLNGRPLAAWSPWELARR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 R-----REHIGFIFQRYHLIpdlsALGNVEIPAIYANSERGSRRmyATALLGRLGLKGREHHkpsELSGGQQQRVSIARA 158
Cdd:COG4559 77 RavlpqHSSLAFPFTVEEVV----ALGRAPHGSSAAQDRQIVRE--ALALVGLAHLAGRSYQ---TLSGGEQQRVQLARV 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 159 LI------NGGE-IILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEIISD 224
Cdd:COG4559 148 LAqlwepvDGGPrWLFLDEPTSALDLAHQHAVLRLARQLARRGGGVVAVLHDLNlAAQYADRILLLHQGRLVAQ 221
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
4-222 |
2.46e-36 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 143.29 E-value: 2.46e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKS-TLMNIMGCLDVPD---KGDYFINGQNAAHLSPDE 79
Cdd:COG4172 6 LLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSvTALSILRLLPDPAahpSGSILFDGQDLLGLSERE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 80 LARTRREHIGFIFQRyhliPdLSAL------GN--VEIPAIYANSERGSRRMYATALLGRLGL---KGREHHKPSELSGG 148
Cdd:COG4172 86 LRRIRGNRIAMIFQE----P-MTSLnplhtiGKqiAEVLRLHRGLSGAAARARALELLERVGIpdpERRLDAYPHQLSGG 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 149 QQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMT-VARHAKRIIELRDGEII 222
Cdd:COG4172 161 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQReLGMALLLITHDLGvVRRFADRVAVMRQGEIV 236
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
26-225 |
3.00e-36 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 135.12 E-value: 3.00e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 26 NVDLTIAaGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFING------QNAAHLSPdelartRREHIGFIFQRYHLIP 99
Cdd:cd03297 16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGtvlfdsRKKINLPP------QQRKIGLVFQQYALFP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 100 DLSALGNVEIpaIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQS 179
Cdd:cd03297 89 HLNVRENLAF--GLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 979479175 180 GLEVLAILSELNRHGH-TVVMVTHDMTVA-RHAKRIIELRDGEIISDS 225
Cdd:cd03297 167 RLQLLPELKQIKKNLNiPVIFVTHDLSEAeYLADRIVVMEDGRLQYIG 214
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
5-222 |
3.72e-36 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 143.38 E-value: 3.72e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDvPDKGDYFINGQNAAHLSPDELart 83
Cdd:COG1132 340 IEFENVSFSYPGD---RPVLKDISLTIPPGETVALVGPSGSGKSTLVNlLLRFYD-PTSGRILIDGVDIRDLTLESL--- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 rREHIGFIFQRYHLIpDLS-----ALGNVEIP-------AIYANSERGSRRM---YATaLLGRLGLKgrehhkpseLSGG 148
Cdd:COG1132 413 -RRQIGVVPQDTFLF-SGTireniRYGRPDATdeeveeaAKAAQAHEFIEALpdgYDT-VVGERGVN---------LSGG 480
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 149 QQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELnRHGHTVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:COG1132 481 QRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERL-MKGRTTIVIAHRLSTIRNADRILVLDDGRIV 553
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
24-172 |
5.60e-36 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 132.39 E-value: 5.60e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQnaaHLSPDELARTRReHIGFIFQRYHLIPDLSA 103
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQ---DLTDDERKSLRK-EIGYVFQDPQLFPRLTV 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 104 LGNVEIPA-IYANSERGSRRMyATALLGRLGLKGREHHK----PSELSGGQQQRVSIARALINGGEIILADEPT 172
Cdd:pfam00005 77 RENLRLGLlLKGLSKREKDAR-AEEALEKLGLGDLADRPvgerPGTLSGGQRQRVAIARALLTKPKLLLLDEPT 149
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
5-221 |
7.99e-35 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 135.21 E-value: 7.99e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSpdelARTR 84
Cdd:PRK10851 3 IEIANIKKSFGR----TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH----ARDR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 RehIGFIFQRYHLIPDLSALGNVEIP-AIYANSERGSR---RMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALI 160
Cdd:PRK10851 75 K--VGFVFQHYALFRHMTVFDNIAFGlTVLPRRERPNAaaiKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 161 NGGEIILADEPTGALDSQSGLEVLAILSELNRH-GHTVVMVTHD----MTVarhAKRIIELRDGEI 221
Cdd:PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEElKFTSVFVTHDqeeaMEV---ADRVVVMSQGNI 215
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
5-216 |
9.07e-35 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 138.57 E-value: 9.07e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDelarTR 84
Cdd:TIGR02857 322 LEFSGVSVAYPG---RRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAD----SW 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDlSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKP-----SELSGGQQQRVSIARAL 159
Cdd:TIGR02857 395 RDQIAWVPQHPFLFAG-TIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPigeggAGLSGGQAQRLALARAF 473
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 160 INGGEIILADEPTGALDSQSGLEVLAILSELNRhGHTVVMVTHDMTVARHAKRIIEL 216
Cdd:TIGR02857 474 LRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHRLALAALADRIVVL 529
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
5-224 |
4.24e-34 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 129.25 E-value: 4.24e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:cd03245 3 IEFRNVSFSYPN--QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADL---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDlSALGNVEIPAIYANSER---GSRRMYATALLGR----LGLKGREHHkpSELSGGQQQRVSIAR 157
Cdd:cd03245 77 RRNIGYVPQDVTLFYG-TLRDNITLGAPLADDERilrAAELAGVTDFVNKhpngLDLQIGERG--RGLSGGQRQAVALAR 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 158 ALINGGEIILADEPTGALDSQSGLEVLAILSELNRHgHTVVMVTHDMTVARHAKRIIELRDGEIISD 224
Cdd:cd03245 154 ALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLLDLVDRIIVMDSGRIVAD 219
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
19-218 |
4.36e-34 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 129.14 E-value: 4.36e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 19 QARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDvPD---KGDYFINGQNAAHLSPdelartRREHIGFIFQR 94
Cdd:COG4136 12 GGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAaIAGTLS-PAfsaSGEVLLNGRRLTALPA------EQRRIGILFQD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 95 YHLIPDLSALGNVEIpAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGA 174
Cdd:COG4136 85 DLLFPHLSVGENLAF-ALPPTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLLDEPFSK 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 979479175 175 LDSQSGLEVLA-ILSELNRHGHTVVMVTHDMTVARHAKRIIELRD 218
Cdd:COG4136 164 LDAALRAQFREfVFEQIRQRGIPALLVTHDEEDAPAAGRVLDLGN 208
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
4-224 |
7.42e-34 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 129.82 E-value: 7.42e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKG-DYFINGQNAAHLSPDELar 82
Cdd:COG1119 3 LLELRNVTVRRGG----KTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGERRGGEDVWEL-- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 trREHIGF----IFQRYHliPDLSALgNVEIPAIYANSERGSR-----RMYATALLGRLGLKGREHHKPSELSGGQQQRV 153
Cdd:COG1119 77 --RKRIGLvspaLQLRFP--RDETVL-DVVLSGFFDSIGLYREptdeqRERARELLELLGLAHLADRPFGTLSQGEQRRV 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 154 SIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGH-TVVMVTHdmtvarHA-------KRIIELRDGEIISD 224
Cdd:COG1119 152 LIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGApTLVLVTH------HVeeippgiTHVLLLKDGRVVAA 224
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
4-214 |
8.30e-34 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 131.78 E-value: 8.30e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTY----GNGSQARTVLK---NVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLS 76
Cdd:COG4608 7 LLEVRDLKKHFpvrgGLFGRTVGVVKavdGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEEPTSGEILFDGQDITGLS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 77 PDELARTRReHIGFIFQ--------RyHLIPDLSAlgnvEIPAIYANSERGSRRMYATALLGRLGLKgREH-HK-PSELS 146
Cdd:COG4608 87 GRELRPLRR-RMQMVFQdpyaslnpR-MTVGDIIA----EPLRIHGLASKAERRERVAELLELVGLR-PEHaDRyPHEFS 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 147 GGQQQRVSIARALINGGEIILADEPTGALD----SQsgleVLAILSEL-NRHGHTVVMVTHDMTVARH-AKRII 214
Cdd:COG4608 160 GGQRQRIGIARALALNPKLIVCDEPVSALDvsiqAQ----VLNLLEDLqDELGLTYLFISHDLSVVRHiSDRVA 229
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
39-224 |
1.13e-33 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 131.46 E-value: 1.13e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 39 IIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDelartrREHIGFIFQRYHLIPDLSALGNVEIPAIYANSER 118
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH------LRHINMVFQSYALFPHMTVEENVAFGLKMRKVPR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 119 GSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALD----SQSGLEVLAILSELnrhG 194
Cdd:TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDkklrDQMQLELKTIQEQL---G 151
|
170 180 190
....*....|....*....|....*....|.
gi 979479175 195 HTVVMVTHDMTVA-RHAKRIIELRDGEIISD 224
Cdd:TIGR01187 152 ITFVFVTHDQEEAmTMSDRIAIMRKGKIAQI 182
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
5-222 |
1.67e-33 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 128.22 E-value: 1.67e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqarTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDelartr 84
Cdd:cd03299 1 LKVENLSKDWKE-----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE------ 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:cd03299 150 ILLLDEPFSALDVRTKEKLREELKKIRKeFGVTVLHVTHDFEEAWAlADKVAIMLNGKLI 209
|
|
| MacB_PCD |
pfam12704 |
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in ... |
271-489 |
1.87e-33 |
|
MacB-like periplasmic core domain; This family represents the periplasmic core domain found in a variety of ABC transporters. The structure of this family has been solved for the MacB protein. Some structural similarity was found to the periplasmic domain of the AcrB multidrug efflux transporter.
Pssm-ID: 463676 [Multi-domain] Cd Length: 211 Bit Score: 127.26 E-value: 1.87e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 271 TTLTMIGIIFGIAAVVTVVALGEGAKQKTLEEIKSLGtNVVRIYPGRdffDDSVESIRTLIPADADALAKQGFVDSVSPE 350
Cdd:pfam12704 1 TALTVLGIAIGVAAVIAILSLGDGLLSAVPEQISDSD-NLVVVQPGA---AGGGGTRPPLSDPDAEALRRAVPVEAVAPV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 351 VSTSdNIRFLGKSAMASINGVGREHFRVKGIELLQGTTFR--DDRNALQEVIIDENTRKAIFDDAglQALGQIILLGSVP 428
Cdd:pfam12704 77 VSTV-RYGNSTTERLVTVVGVDPDFFKVFGLPLAEGRFFTeaDVLGGPNVVVLGESLAEKLFGGD--DPVGKTIRLNGQP 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 429 ARVVGIARSSDYSDMPNRItVWMPYSTVMYRMvgKPVLSSISVRLKDNVNNEAAISAISQL 489
Cdd:pfam12704 154 FTVVGVLPDFPGSDGGGDL-VYVPLTTLQRRL--GDSVSTILVRLKDGADLAAAAAELRAL 211
|
|
| 3a0107s01c2 |
TIGR00972 |
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein ... |
4-222 |
4.97e-33 |
|
phosphate ABC transporter, ATP-binding protein; This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. [Transport and binding proteins, Anions]
Pssm-ID: 273372 [Multi-domain] Cd Length: 247 Bit Score: 127.41 E-value: 4.97e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTL---MNIMGCLdVPD---KGDYFINGQN--AAHL 75
Cdd:TIGR00972 1 AIEIENLNLFYGE----KEALKNINLDIPKNQVTALIGPSGCGKSTLlrsLNRMNDL-VPGvriEGKVLFDGQDiyDKKI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 76 SPDELartrREHIGFIFQRYHLIPdLSALGNVEI-PAIYANSERGSRRMYATALLGRLGL----KGREHHKPSELSGGQQ 150
Cdd:TIGR00972 76 DVVEL----RRRVGMVFQKPNPFP-MSIYDNIAYgPRLHGIKDKKELDEIVEESLKKAALwdevKDRLHDSALGLSGGQQ 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 151 QRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELnRHGHTVVMVTHDMTVA-RHAKRIIELRDGEII 222
Cdd:TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAaRISDRTAFFYDGELV 222
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
24-219 |
5.13e-33 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 126.81 E-value: 5.13e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELArtrrehigfIFQRYHLIPDLSA 103
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMV---------VFQNYSLLPWLTV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 104 LGNV--EIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGL 181
Cdd:TIGR01184 72 RENIalAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 979479175 182 EVLAILSEL-NRHGHTVVMVTHDMTVARH-AKRIIELRDG 219
Cdd:TIGR01184 152 NLQEELMQIwEEHRVTVLMVTHDVDEALLlSDRVVMLTNG 191
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-223 |
1.12e-32 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 127.05 E-value: 1.12e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNgsQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNaahLSPDEL 80
Cdd:PRK13635 2 KEEIIRVEHISFRYPD--AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMV---LSEETV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARTRREhIGFIFQRyhliPDLSALG-NVEIPAIYANSERG------SRRMYATalLGRLGLKGREHHKPSELSGGQQQRV 153
Cdd:PRK13635 77 WDVRRQ-VGMVFQN----PDNQFVGaTVQDDVAFGLENIGvpreemVERVDQA--LRQVGMEDFLNREPHRLSGGQKQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 154 SIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGH-TVVMVTHDMTVARHAKRIIELRDGEIIS 223
Cdd:PRK13635 150 AIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGiTVLSITHDLDEAAQADRVIVMNKGEILE 220
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
5-228 |
1.55e-32 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 124.92 E-value: 1.55e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGqnaahLSPDELARTR 84
Cdd:cd03263 1 LQIRNLTKTYKKGT--KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYING-----YSIRTDRKAA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELnRHGHTVVMVTHDMTVARH-AKRIIELRDGEIIsDSGSC 228
Cdd:cd03263 154 VLLLDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSMDEAEAlCDRIAIMSDGKLR-CIGSP 216
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
7-223 |
2.21e-32 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 131.34 E-value: 2.21e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 7 LKGISRTYGngsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGdyfingqnaahlspdELARTRRE 86
Cdd:COG0488 1 LENLSKSFG----GRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSG---------------EVSIPKGL 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 87 HIGFIFQRYHLIPDLSALGNV------------EIPAIYANSERGSRRM---------------Y-----ATALLGRLGL 134
Cdd:COG0488 62 RIGYLPQEPPLDDDLTVLDTVldgdaelraleaELEELEAKLAEPDEDLerlaelqeefealggWeaearAEEILSGLGF 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 135 KGREHHKP-SELSGGQQQRVSIARALINGGEIILADEPTGALDsqsgLEVLAILSE-LNRHGHTVVMVTHDmtvaRH--- 209
Cdd:COG0488 142 PEEDLDRPvSELSGGWRRRVALARALLSEPDLLLLDEPTNHLD----LESIEWLEEfLKNYPGTVLVVSHD----RYfld 213
|
250
....*....|....*.
gi 979479175 210 --AKRIIELRDGEIIS 223
Cdd:COG0488 214 rvATRILELDRGKLTL 229
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
17-216 |
2.24e-32 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 123.50 E-value: 2.24e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 17 GSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGdyfingqnaahlspdELARTRREHIGFIFQRYH 96
Cdd:NF040873 1 GYGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSG---------------TVRRAGGARVAYVPQRSE 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 97 LiPDLSALGNVEIPAIYANSERGSRRMY-------ATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILAD 169
Cdd:NF040873 66 V-PDSLPLTVRDLVAMGRWARRGLWRRLtrddraaVDDALERVGLADLAGRQLGELSGGQRQRALLAQGLAQEADLLLLD 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 979479175 170 EPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIEL 216
Cdd:NF040873 145 EPTTGLDAESRERIIALLAEEHARGATVVVVTHDLELVRRADPCVLL 191
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
5-222 |
3.18e-32 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 123.84 E-value: 3.18e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQartvLKNVDLTIAAGeMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHlSPDELartr 84
Cdd:cd03264 1 LQLENLTKRYGKKRA----LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK-QPQKL---- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNRhGHTVVMVTHDMT-VARHAKRIIELRDGEII 222
Cdd:cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEdVESLCNQVAVLNKGKLV 208
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-224 |
3.66e-32 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 125.20 E-value: 3.66e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQ-ARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDvPDKGDYFINGQNAAHLSPDELA 81
Cdd:COG1101 1 MLELKNLSKTFNPGTVnEKRALDGLNLTIEEGDFVTVIGSNGAGKSTLLNaIAGSLP-PDSGSILIDGKDVTKLPEYKRA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 82 RtrreHIGFIFQRYHL--IPDLSALGNVeipAIYANseRGSRRMYATALLGR-------------LGLKGREHHKPSELS 146
Cdd:COG1101 80 K----YIGRVFQDPMMgtAPSMTIEENL---ALAYR--RGKRRGLRRGLTKKrrelfrellatlgLGLENRLDTKVGLLS 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 147 GGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHDMTVA-RHAKRIIELRDGEIISD 224
Cdd:COG1101 151 GGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIvEENNLTTLMVTHNMEQAlDYGNRLIMMHEGRIILD 230
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-222 |
3.69e-32 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 130.53 E-value: 3.69e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGnGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDEl 80
Cdd:COG3845 2 MPPALELRGITKRFG-GVVA---NDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVRIRSPRD- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ArtRREHIGFIFQRYHLIPDLS-----ALGNVEIPAIYANSERGSRRMyaTALLGRLGLKGREHHKPSELSGGQQQRVSI 155
Cdd:COG3845 77 A--IALGIGMVHQHFMLVPNLTvaeniVLGLEPTKGGRLDRKAARARI--RELSERYGLDVDPDAKVEDLSVGEQQRVEI 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 156 ARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEII 222
Cdd:COG3845 153 LKALYRGARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLReVMAIADRVTVLRRGKVV 220
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
5-222 |
6.31e-32 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 123.31 E-value: 6.31e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGnGSQartVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDvPDKGDYFINGQNAAHLSPDELARt 83
Cdd:cd03224 1 LEVENLNAGYG-KSQ---ILFGVSLTVPEGEIVALLGRNGAGKTTLLKtIMGLLP-PRSGSIRFDGRDITGLPPHERAR- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 rrEHIGFIFQRYHLIPDLSALGNVEIpAIYANSERGSR----RMYAtaLLGRLglKGREHHKPSELSGGQQQRVSIARAL 159
Cdd:cd03224 75 --AGIGYVPEGRRIFPELTVEENLLL-GAYARRRAKRKarleRVYE--LFPRL--KERRKQLAGTLSGGEQQMLAIARAL 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 160 INGGEIILADEPTgaldsqSGL------EVLAILSELNRHGHTVVMVTHDMTVA-RHAKRIIELRDGEII 222
Cdd:cd03224 148 MSRPKLLLLDEPS------EGLapkiveEIFEAIRELRDEGVTILLVEQNARFAlEIADRAYVLERGRVV 211
|
|
| ADOP |
TIGR03434 |
Acidobacterial duplicated orphan permease; Members of this protein family are found, so far, ... |
317-646 |
7.91e-32 |
|
Acidobacterial duplicated orphan permease; Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Pssm-ID: 274576 [Multi-domain] Cd Length: 803 Bit Score: 131.86 E-value: 7.91e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 317 RDFFDDSVESIRTLIPADADALAkqgfvdSVSPEVSTSDNIRF---------LGKSAMASINGVGREHFRVKGIELLQGT 387
Cdd:TIGR03434 475 AAFYRRLLERLRALPGVESAALA------SSLPLSGNGWSGGVtiegrppppPGEEPLADYRRVSPGYFETMGIPLLRGR 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 388 TF--RDDRNALQEVIIDENTRKAIFDDAglQALGQIILLG---SVPARVVGIARSSDYSDM--PNRITVWMPYS------ 454
Cdd:TIGR03434 549 DFteRDTAGSPPVAIVNEAFARRYFPGE--DPIGKRIRLGgddGPWFEIVGVVGDVRYAGLdePPRPEVYLPYAqspdrg 626
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 455 -TVMYRMVGKPvlssisvrlkdnvnnEAAISAISQLLtrrHGV-KDFQVYNF----EQIKKSVERTSMTfSILILMVASI 528
Cdd:TIGR03434 627 mTLVVRTAGDP---------------AALAAAVRRAV---RAIdPNLPVYDVrtmeEQVDRSLAQERFL-ALLLGLFAAL 687
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 529 SLMIGSIGVMNIMLVSVTERTHEIGVRMAVGARYGDIMQQFIIEAVLVCLIGGALGIALSYATGMLFTALgdeMFTV--- 605
Cdd:TIGR03434 688 ALLLAAIGLYGVLAYSVAQRTREIGIRMALGAQRGDVLRLVLRQGLRLAAAGLAIGLAAALALARLLASL---LFGVspt 764
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 979479175 606 ---IYswqAAVTAFFCSTliGMIFGYLPARKAARMDPIISLASE 646
Cdd:TIGR03434 765 dplTF---AAVAALLLAV--ALLACYLPARRAARVDPMIALRAE 803
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
28-224 |
2.24e-31 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 122.00 E-value: 2.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 28 DLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDelartrREHIGFIFQRYHLIPDLSALGNV 107
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS------RRPVSMLFQENNLFSHLTVAQNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 108 EI---PAIYANSERG------SRRMYATALLGRLglkgrehhkPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQ 178
Cdd:PRK10771 93 GLglnPGLKLNAAQReklhaiARQMGIEDLLARL---------PGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 979479175 179 SGLEVLAILSELNRHGH-TVVMVTHDMT-VARHAKRIIELRDGEIISD 224
Cdd:PRK10771 164 LRQEMLTLVSQVCQERQlTLLMVSHSLEdAARIAPRSLVVADGRIAWD 211
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
5-224 |
2.34e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 124.04 E-value: 2.34e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQ-ARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKG--DYFINGQNAAH------- 74
Cdd:PRK13651 3 IKVKNIVKIFNKKLPtELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGtiEWIFKDEKNKKktkekek 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 75 -LSPDELARTR----------REHIGFIFQ--RYHL----IPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKgr 137
Cdd:PRK13651 83 vLEKLVIQKTRfkkikkikeiRRRVGVVFQfaEYQLfeqtIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ-- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 138 ehHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIEL 216
Cdd:PRK13651 161 --RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLdNVLEWTKRTIFF 238
|
....*...
gi 979479175 217 RDGEIISD 224
Cdd:PRK13651 239 KDGKIIKD 246
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
5-222 |
2.61e-31 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 121.17 E-value: 2.61e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDelartr 84
Cdd:cd03268 1 LKTNDLTKTYGK----KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA------ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPAIYanseRGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARL----LGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEII 222
Cdd:cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSeIQKVADRIGIINKGKLI 205
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
5-222 |
3.16e-31 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 122.11 E-value: 3.16e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARtr 84
Cdd:COG4604 2 IEIKNVSKRYGG----KVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATTPSRELAK-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 reHIGFIFQRYHLIP-----DLSALGNveipaiYANSeRG-----SRRMYATALlGRLGLKGREHHKPSELSGGQQQRVS 154
Cdd:COG4604 76 --RLAILRQENHINSrltvrELVAFGR------FPYS-KGrltaeDREIIDEAI-AYLDLEDLADRYLDELSGGQRQRAF 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 155 IARALINGGEIILADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHDMTVA-RHAKRIIELRDGEII 222
Cdd:COG4604 146 IAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLaDELGKTVVIVLHDINFAsCYADHIVAMKDGRVV 215
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
26-222 |
3.44e-31 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 124.83 E-value: 3.44e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 26 NVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQ----NAAHLSpdeLARTRReHIGFIFQRYHLIPDL 101
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERPDSGRIRLGGEvlqdSARGIF---LPPHRR-RIGYVFQEARLFPHL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 102 SALGNVEipaiYA--NSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQS 179
Cdd:COG4148 93 SVRGNLL----YGrkRAPRAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDEPLAALDLAR 168
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 979479175 180 GLEVLAILSELNRHGHT-VVMVTHDMT-VARHAKRIIELRDGEII 222
Cdd:COG4148 169 KAEILPYLERLRDELDIpILYVSHSLDeVARLADHVVLLEQGRVV 213
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
5-222 |
3.72e-31 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 119.73 E-value: 3.72e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDvPDKGDYFINGQNAAhlspdELART 83
Cdd:cd03247 1 LSINNVSFSYPE--QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQlLTGDLK-PQQGEITLDGVPVS-----DLEKA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREHIGFIFQRYHLipdlsalgnveipaiyansergsrrmYATALLGRLGLKgrehhkpseLSGGQQQRVSIARALINGG 163
Cdd:cd03247 73 LSSLISVLNQRPYL--------------------------FDTTLRNNLGRR---------FSGGERQRLALARILLQDA 117
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 164 EIILADEPTGALDSQSGLEVLAILSELNRhGHTVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:cd03247 118 PIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIWITHHLTGIEHMDKILFLENGKII 175
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
5-221 |
5.27e-31 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 119.24 E-value: 5.27e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:cd03246 1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDlSALGNVeipaiyansergsrrmyatallgrlglkgrehhkpseLSGGQQQRVSIARALINGGE 164
Cdd:cd03246 75 GDHVGYLPQDDELFSG-SIAENI-------------------------------------LSGGQRQRLGLARALYGNPR 116
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIELRDGEI 221
Cdd:cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
|
| type_I_sec_LssB |
TIGR03375 |
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some ... |
5-224 |
5.35e-31 |
|
type I secretion system ATPase, LssB family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 274550 [Multi-domain] Cd Length: 694 Bit Score: 128.83 E-value: 5.35e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:TIGR03375 464 IEFRNVSFAYPG--QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL---- 537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIpdlsaLG----NVEIPAIYANSERgsrrMYATALLGRLGLKGREH-----HKPSE----LSGGQQQ 151
Cdd:TIGR03375 538 RRNIGYVPQDPRLF-----YGtlrdNIALGAPYADDEE----ILRAAELAGVTEFVRRHpdgldMQIGErgrsLSGGQRQ 608
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 152 RVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELnRHGHTVVMVTHDMTVARHAKRIIELRDGEIISD 224
Cdd:TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRW-LAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD 680
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
5-222 |
5.44e-31 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 127.91 E-value: 5.44e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGngSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:TIGR02203 331 VEFRNVTFRYP--GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL---- 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSAlGNVEIPAIY----ANSERGSRRMYATALLGRL--GLKGREHHKPSELSGGQQQRVSIARA 158
Cdd:TIGR02203 405 RRQVALVSQDVVLFNDTIA-NNIAYGRTEqadrAEIERALAAAYAQDFVDKLplGLDTPIGENGVLLSGGQRQRLAIARA 483
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSELNRhGHTVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHRLSTIEKADRIVVMDDGRIV 546
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
5-222 |
6.49e-31 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 120.80 E-value: 6.49e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:cd03251 1 VEFKNVTFRYPG--DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASL---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHL----IPDLSALGNVEIPAiyANSERGSRRMYATALLGRL--GLKGREHHKPSELSGGQQQRVSIARA 158
Cdd:cd03251 75 RRQIGLVSQDVFLfndtVAENIAYGRPGATR--EEVEEAARAANAHEFIMELpeGYDTVIGERGVKLSGGQRQRIAIARA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSELNRhGHTVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:cd03251 153 LLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLSTIENADRIVVLEDGKIV 215
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-213 |
7.03e-31 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 121.30 E-value: 7.03e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTL---MNIMGCLdVPD---KGDYFINGQN--A 72
Cdd:COG1117 8 LEPKIEVRNLNVYYGD----KQALKDINLDIPENKVTALIGPSGCGKSTLlrcLNRMNDL-IPGarvEGEILLDGEDiyD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 73 AHLSPDELartrREHIGFIFQRYHLIPdLSALGNVEIPAIYaNSERGSRRMYA---TALLgRLGL----KGREHHKPSEL 145
Cdd:COG1117 83 PDVDVVEL----RRRVGMVFQKPNPFP-KSIYDNVAYGLRL-HGIKSKSELDEiveESLR-KAALwdevKDRLKKSALGL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 146 SGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELnRHGHTVVMVTHDMtvaRHAKRI 213
Cdd:COG1117 156 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILEL-KKDYTIVIVTHNM---QQAARV 219
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
4-222 |
1.74e-30 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 119.70 E-value: 1.74e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGnGSQartVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGcLDVPDKGDYFINGQNAAHLSPDELAR 82
Cdd:COG0410 3 MLEVENLHAGYG-GIH---VLHGVSLEVEEGEIVALLGRNGAGKTTLLKaISG-LLPPRSGSIRFDGEDITGLPPHRIAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 trrEHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSR----RMYAtaLLGRLglKGREHHKPSELSGGQQQRVSIARA 158
Cdd:COG0410 78 ---LGIGYVPEGRRIFPSLTVEENLLLGAYARRDRAEVRadleRVYE--LFPRL--KERRRQRAGTLSGGEQQMLAIGRA 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 159 LINGGEIILADEPTgaldsqSGL------EVLAILSELNRHGHTVVMVTHDMTVA-RHAKRIIELRDGEII 222
Cdd:COG0410 151 LMSRPKLLLLDEPS------LGLapliveEIFEIIRRLNREGVTILLVEQNARFAlEIADRAYVLERGRIV 215
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
5-223 |
3.91e-30 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 118.48 E-value: 3.91e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDvPDKGDYFINGQNAAHLSPDELart 83
Cdd:cd03254 3 IEFENVNFSYDEK---KPVLKDINFSIKPGETVAIVGPTGAGKTTLINlLMRFYD-PQKGQILIDGIDIRDISRKSL--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 rREHIGFIFQRYHLIPDlSALGNVEIPAIYANSE---RGSRRMYATALLGRL--GLKGREHHKPSELSGGQQQRVSIARA 158
Cdd:cd03254 76 -RSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEeviEAAKEAGAHDFIMKLpnGYDTVLGENGGNLSQGERQLLAIARA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSELnRHGHTVVMVTHDMTVARHAKRIIELRDGEIIS 223
Cdd:cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKNADKILVLDDGKIIE 217
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
1-222 |
4.70e-30 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 119.17 E-value: 4.70e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNGS-----QARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQnaaHL 75
Cdd:COG4167 1 MSALLEVRNLSKTFKYRTglfrrQQFEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEPTSGEILINGH---KL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 76 SPDElARTRREHIGFIFQ--RYHLIPDLSaLGNV-EIPAIYA----NSERgSRRMYATalLGRLGLKgREH--HKPSELS 146
Cdd:COG4167 78 EYGD-YKYRCKHIRMIFQdpNTSLNPRLN-IGQIlEEPLRLNtdltAEER-EERIFAT--LRLVGLL-PEHanFYPHMLS 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 147 GGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELN-RHGHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:COG4167 152 SGQKQRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQeKLGISYIYVSQHLGIVKHiSDKVLVMHQGEVV 229
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
4-244 |
5.25e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 119.41 E-value: 5.25e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTL-MNIMGCLDvPDKGDYFINGQNAAHLSPDELAr 82
Cdd:PRK13639 1 ILETRDLKYSYPDGTEA---LKGINFKAEKGEMVALLGPNGAGKSTLfLHFNGILK-PTSGEVLIKGEPIKYDKKSLLE- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 tRREHIGFIFQRyhliPDLS----------ALG--NVEIPaiyaNSERGSRRMYAtalLGRLGLKGREHHKPSELSGGQQ 150
Cdd:PRK13639 76 -VRKTVGIVFQN----PDDQlfaptveedvAFGplNLGLS----KEEVEKRVKEA---LKAVGMEGFENKPPHHLSGGQK 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 151 QRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEIISdSGSCV 229
Cdd:PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDlVPVYADKVYVMSDGKIIK-EGTPK 222
|
250
....*....|....*
gi 979479175 230 SVtktWRQTNSIRQS 244
Cdd:PRK13639 223 EV---FSDIETIRKA 234
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
2-222 |
6.80e-30 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 124.02 E-value: 6.80e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 2 RKIIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDvPDKGDYFInGQNAahlspdel 80
Cdd:COG0488 313 KKVLELEGLSKSYGD----KTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKlLAGELE-PDSGTVKL-GETV-------- 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 artrreHIGFIFQ-RYHLIPDLSALGNVeipaiyANSERGSRRMYATALLGRLGLKGREHHKP-SELSGGQQQRVSIARA 158
Cdd:COG0488 379 ------KIGYFDQhQEELDPDKTVLDEL------RDGAPGGTEQEVRGYLGRFLFSGDDAFKPvGVLSGGEKARLALAKL 446
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 159 LINGGEIILADEPTGALDsqsgLEVLAILSE-LNRHGHTVVMVTHDMT-VARHAKRIIELRDGEII 222
Cdd:COG0488 447 LLSPPNVLLLDEPTNHLD----IETLEALEEaLDDFPGTVLLVSHDRYfLDRVATRILEFEDGGVR 508
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
17-224 |
7.78e-30 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 118.58 E-value: 7.78e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 17 GSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARtrreHIGFIFQRyH 96
Cdd:PRK11231 11 GYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR----RLALLPQH-H 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 97 LIP------DLSALGnveipaiyansergsRRMYATaLLGRLGLKGREH---------------HKPSELSGGQQQRVSI 155
Cdd:PRK11231 86 LTPegitvrELVAYG---------------RSPWLS-LWGRLSAEDNARvnqameqtrinhladRRLTDLSGGQRQRAFL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 156 ARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVA-RHAKRIIELRDGEIISD 224
Cdd:PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQAsRYCDHLVVLANGHVMAQ 219
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
6-222 |
1.01e-29 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 116.59 E-value: 1.01e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 6 ELKGISRTYGNGsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAhlspdelARTRR 85
Cdd:cd03226 1 RIENISFSYKKG---TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK-------AKERR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 86 EHIGFIFQ--RYHLIPDLSA----LGNVEIPAIYANSErgsrrmyatALLGRLGLKG-REHHkPSELSGGQQQRVSIARA 158
Cdd:cd03226 71 KSIGYVMQdvDYQLFTDSVReellLGLKELDAGNEQAE---------TVLKDLDLYAlKERH-PLSLSGGQKQRLAIAAA 140
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEII 222
Cdd:cd03226 141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEfLAKVCDRVLLLANGAIV 205
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-207 |
1.77e-29 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 120.33 E-value: 1.77e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYgNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPdel 80
Cdd:PRK11607 16 LTPLLEIRNLTKSF-DGQHA---VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 artRREHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALI 160
Cdd:PRK11607 89 ---YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLA 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 161 NGGEIILADEPTGALDSQ----SGLEVLAILSelnRHGHTVVMVTHD----MTVA 207
Cdd:PRK11607 166 KRPKLLLLDEPMGALDKKlrdrMQLEVVDILE---RVGVTCVMVTHDqeeaMTMA 217
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
27-221 |
2.75e-29 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 119.45 E-value: 2.75e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 27 VDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARTRREHIGFIFQRYHLIPDLSALGN 106
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 107 VEIPAIYAN-SERGSRRMYATALLGRLGLKGRehhKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLA 185
Cdd:TIGR02142 96 LRYGMKRARpSERRISFERVIELLGIGHLLGR---LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP 172
|
170 180 190
....*....|....*....|....*....|....*...
gi 979479175 186 ILSELNRH-GHTVVMVTHDMT-VARHAKRIIELRDGEI 221
Cdd:TIGR02142 173 YLERLHAEfGIPILYVSHSLQeVLRLADRVVVLEDGRV 210
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
15-202 |
3.58e-29 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 114.57 E-value: 3.58e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 15 GNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNI-MGCLDVP-DKGDYFINGQNaahLSPDELartrREHIGFIF 92
Cdd:cd03213 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAlAGRRTGLgVSGEVLINGRP---LDKRSF----RKIIGYVP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 93 QRYHLIPDLSALGNVeipaiyansergsrrMYATALLGrlglkgrehhkpseLSGGQQQRVSIARALINGGEIILADEPT 172
Cdd:cd03213 89 QDDILHPTLTVRETL---------------MFAAKLRG--------------LSGGERKRVSIALELVSNPSLLFLDEPT 139
|
170 180 190
....*....|....*....|....*....|
gi 979479175 173 GALDSQSGLEVLAILSELNRHGHTVVMVTH 202
Cdd:cd03213 140 SGLDSSSALQVMSLLRRLADTGRTIICSIH 169
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
5-222 |
7.79e-29 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 121.47 E-value: 7.79e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQArtVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:PRK11160 339 LTLNNVSFTYPDQPQP--VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL---- 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDlSALGNVEIPAIYANSERgsrrmyATALLGRLGLK----------------GREhhkpseLSGG 148
Cdd:PRK11160 413 RQAISVVSQRVHLFSA-TLRDNLLLAAPNASDEA------LIEVLQQVGLEklleddkglnawlgegGRQ------LSGG 479
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 149 QQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHgHTVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQN-KTVLMITHRLTGLEQFDRICVMDNGQII 552
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
28-221 |
8.32e-29 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 114.19 E-value: 8.32e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 28 DLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPdelartRREHIGFIFQRYHLIPDLSALGNV 107
Cdd:TIGR01277 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP------YQRPVSMLFQENNLFAHLTVRQNI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 108 EI---PAIYANSERgSRRMYATALlgRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVL 184
Cdd:TIGR01277 92 GLglhPGLKLNAEQ-QEKVVDAAQ--QVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML 168
|
170 180 190
....*....|....*....|....*....|....*....
gi 979479175 185 AILSEL-NRHGHTVVMVTHDMT-VARHAKRIIELRDGEI 221
Cdd:TIGR01277 169 ALVKQLcSERQRTLLMVTHHLSdARAIASQIAVVSQGKI 207
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
5-222 |
9.31e-29 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 114.63 E-value: 9.31e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:cd03253 1 IEFENVTFAYDPG---RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSL---- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPD----------LSAlGNVEI--PAIYANSERGSRRM---YATaLLGRLGLKgrehhkpseLSGGQ 149
Cdd:cd03253 74 RRAIGVVPQDTVLFNDtigynirygrPDA-TDEEVieAAKAAQIHDKIMRFpdgYDT-IVGERGLK---------LSGGE 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 150 QQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRhGHTVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIV 214
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
24-222 |
1.48e-28 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 118.21 E-value: 1.48e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARTRREHIGFIFQRYHLIPDLSA 103
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTV 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 104 LGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEV 183
Cdd:PRK10070 124 LDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEM 203
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 979479175 184 LAILSELN-RHGHTVVMVTHDMTVA-RHAKRIIELRDGEII 222
Cdd:PRK10070 204 QDELVKLQaKHQRTIVFISHDLDEAmRIGDRIAIMQNGEVV 244
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
4-231 |
1.54e-28 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 120.17 E-value: 1.54e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTY--GNGSQARTV-----LKNVDLTIAAGEMVAIIGASGSGKSTL-MNIMGcLdVPDKGDYFINGQNAAHL 75
Cdd:COG4172 275 LLEARDLKVWFpiKRGLFRRTVghvkaVDGVSLTLRRGETLGLVGESGSGKSTLgLALLR-L-IPSEGEIRFDGQDLDGL 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 76 SPDELARTRReHIGFIFQ--------------------RYHLiPDLSalgnveipaiyanseRGSRRMYATALLGRLGLK 135
Cdd:COG4172 353 SRRALRPLRR-RMQVVFQdpfgslsprmtvgqiiaeglRVHG-PGLS---------------AAERRARVAEALEEVGLD 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 136 GREHHK-PSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELN-RHGHTVVMVTHDMTVARH-AKR 212
Cdd:COG4172 416 PAARHRyPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQrEHGLAYLFISHDLAVVRAlAHR 495
|
250
....*....|....*....
gi 979479175 213 IIELRDGEIIsDSGSCVSV 231
Cdd:COG4172 496 VMVMKDGKVV-EQGPTEQV 513
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
4-224 |
1.70e-28 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 114.78 E-value: 1.70e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGS-----QARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPD 78
Cdd:PRK10419 3 LLNVSGLSHHYAHGGlsgkhQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 79 ELARTRREhIGFIFQryhlipdlSALGNVE----IPAIYA-------NSERGSRRMYATALLGRLGLKGREHHK-PSELS 146
Cdd:PRK10419 83 QRKAFRRD-IQMVFQ--------DSISAVNprktVREIIReplrhllSLDKAERLARASEMLRAVDLDDSVLDKrPPQLS 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 147 GGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTV-VMVTHDMT-VARHAKRIIELRDGEIISD 224
Cdd:PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTAcLFITHDLRlVERFCQRVMVMDNGQIVET 233
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
5-222 |
1.90e-28 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 113.79 E-value: 1.90e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:cd03249 1 IEFKNVSFRYPSRPD-VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWL---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIpDLSALGNVEI---PAIYANSERGSRRMYATALLGRL--------GLKGrehhkpSELSGGQQQRV 153
Cdd:cd03249 76 RSQIGLVSQEPVLF-DGTIAENIRYgkpDATDEEVEEAAKKANIHDFIMSLpdgydtlvGERG------SQLSGGQKQRI 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 154 SIARALINGGEIILADEPTGALDSQSGLEVLAILSELnRHGHTVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:cd03249 149 AIARALLRNPKILLLDEATSALDAESEKLVQEALDRA-MKGRTTIVIAHRLSTIRNADLIAVLQNGQVV 216
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
4-207 |
2.62e-28 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 114.03 E-value: 2.62e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGngsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDElart 83
Cdd:PRK11248 1 MLQISHLYADYG----GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER---- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 rrehiGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGG 163
Cdd:PRK11248 73 -----GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANP 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 979479175 164 EIILADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHDMTVA 207
Cdd:PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLwQETGKQVLLITHDIEEA 192
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-281 |
2.96e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 114.44 E-value: 2.96e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYgNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQnaaHLSPDEL 80
Cdd:PRK13650 1 MSNIIEVKNLTFKY-KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD---LLTEENV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARTRReHIGFIFQRyhliPDLSALG-NVEIPAIYANSERG-------SRRMYATALLGRLGLKGREhhkPSELSGGQQQR 152
Cdd:PRK13650 77 WDIRH-KIGMVFQN----PDNQFVGaTVEDDVAFGLENKGipheemkERVNEALELVGMQDFKERE---PARLSGGQKQR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 153 VSIARALINGGEIILADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHDMTVARHAKRIIELRDGEIISDSgscvsv 231
Cdd:PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIrDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTS------ 222
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 979479175 232 tkTWRQtnsirqsywqtLFDRTRESLQMALKAMNAHRLRTTLTMIGIIFG 281
Cdd:PRK13650 223 --TPRE-----------LFSRGNDLLQLGLDIPFTTSLVQSLRQNGYDLP 259
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
5-237 |
3.49e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 114.54 E-value: 3.49e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQARTV-LKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQN-AAHLSPDELAR 82
Cdd:PRK13641 3 IKFENVDYIYSPGTPMEKKgLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHiTPETGNKNLKK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 TRREhIGFIFQ--RYHLIPDlSALGNVEI-PAIYANSERGSRRMyATALLGRLGLKGR-EHHKPSELSGGQQQRVSIARA 158
Cdd:PRK13641 83 LRKK-VSLVFQfpEAQLFEN-TVLKDVEFgPKNFGFSEDEAKEK-ALKWLKKVGLSEDlISKSPFELSGGQMRRVAIAGV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGEIIS-DSGSCVSVTKTWR 236
Cdd:PRK13641 160 MAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMdDVAEYADDVLVLEHGKLIKhASPKEIFSDKEWL 239
|
.
gi 979479175 237 Q 237
Cdd:PRK13641 240 K 240
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1-224 |
6.17e-28 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 113.64 E-value: 6.17e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNG--SQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAahlSPD 78
Cdd:PRK13633 1 MNEMIKCKNVSYKYESNeeSTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDT---SDE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 79 ELARTRREHIGFIFQRyhliPDLS----------ALG--NVEIPAiyanSERGSRRMYAtalLGRLGLKGREHHKPSELS 146
Cdd:PRK13633 78 ENLWDIRNKAGMVFQN----PDNQivativeedvAFGpeNLGIPP----EEIRERVDES---LKKVGMYEYRRHAPHLLS 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 147 GGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVARHAKRIIELRDGEIISD 224
Cdd:PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKkYGITIILITHYMEEAVEADRIIVMDSGKVVME 225
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
5-222 |
8.81e-28 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 111.31 E-value: 8.81e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAhlspdELARTR 84
Cdd:cd03265 1 IEVENLVKKYGD----FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV-----REPREV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEeFGMTILLTTHYMEEAEQlCDRVAIIDHGRII 211
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-222 |
1.03e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 113.28 E-value: 1.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLM-NIMGCLDvPDKGDYFINGQnaahlspdELAR 82
Cdd:COG4152 1 MLELKGLTKRFGD----KTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIrIILGILA-PDSGEVLWDGE--------PLDP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 TRREHIGFIfqryhliPDlsalgnveipaiyansERG-SRRM-------Y---------------ATALLGRLGLKGREH 139
Cdd:COG4152 68 EDRRRIGYL-------PE----------------ERGlYPKMkvgeqlvYlarlkglskaeakrrADEWLERLGLGDRAN 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 140 HKPSELSGGQQQRVSIARALINGGEIILADEPTgaldsqSGL-----EVLA-ILSELNRHGHTVVMVTHDM-TVARHAKR 212
Cdd:COG4152 125 KKVEELSKGNQQKVQLIAALLHDPELLILDEPF------SGLdpvnvELLKdVIRELAAKGTTVIFSSHQMeLVEELCDR 198
|
250
....*....|
gi 979479175 213 IIELRDGEII 222
Cdd:COG4152 199 IVIINKGRKV 208
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
3-222 |
1.05e-27 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 112.78 E-value: 1.05e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 3 KIIELKGISRTYGNGSqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELar 82
Cdd:PRK13632 6 VMIKVENVSFSYPNSE--NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 trREHIGFIFQRyhliPDLSALG-NVE--IPAIYANSERGSRRMYA--TALLGRLGLKGREHHKPSELSGGQQQRVSIAR 157
Cdd:PRK13632 82 --RKKIGIIFQN----PDNQFIGaTVEddIAFGLENKKVPPKKMKDiiDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIAS 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 158 ALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGH-TVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKkTLISITHDMDEAILADKVIVFSEGKLI 221
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
5-203 |
1.07e-27 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 117.46 E-value: 1.07e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQartVLKNVDLTIAAGEMVAIIGASGSGKSTL-MNIMGCLDvPDKGDYFINGQNAAHLSPDELART 83
Cdd:TIGR02868 335 LELRDLSAGYPGAPP---VLDGVSLDLPPGERVAILGPSGSGKSTLlATLAGLLD-PLQGEVTLDGVPVSSLDQDEVRRR 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 rrehIGFIFQRYHLIpDLSALGNVEIPAIYAnSERGSRRMYATALLGRL------GLKGREHHKPSELSGGQQQRVSIAR 157
Cdd:TIGR02868 411 ----VSVCAQDAHLF-DTTVRENLRLARPDA-TDEELWAALERVGLADWlralpdGLDTVLGEGGARLSGGERQRLALAR 484
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 979479175 158 ALINGGEIILADEPTGALDSQSGLEVLAILSELNRhGHTVVMVTHD 203
Cdd:TIGR02868 485 ALLADAPILLLDEPTEHLDAETADELLEDLLAALS-GRTVVLITHH 529
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
5-207 |
1.89e-27 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 114.05 E-value: 1.89e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGsqarTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSpdelarTR 84
Cdd:PRK11432 7 VVLKNITKRFGSN----TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS------IQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVEipaiY-------ANSERGSRRMYATALlgrLGLKGREHHKPSELSGGQQQRVSIAR 157
Cdd:PRK11432 77 QRDICMVFQSYALFPHMSLGENVG----YglkmlgvPKEERKQRVKEALEL---VDLAGFEDRYVDQISGGQQQRVALAR 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 979479175 158 ALINGGEIILADEPTGALDSQSGLEVLAILSELN-RHGHTVVMVTHDMTVA 207
Cdd:PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQqQFNITSLYVTHDQSEA 200
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
5-224 |
2.00e-27 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 111.04 E-value: 2.00e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGngSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:cd03252 1 ITFEHVRFRYK--PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWL---- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHL----IPDLSALGNVEIP---AIYANSERGSRRMYATALLGRLGLKGrehHKPSELSGGQQQRVSIAR 157
Cdd:cd03252 75 RRQVGVVLQENVLfnrsIRDNIALADPGMSmerVIEAAKLAGAHDFISELPEGYDTIVG---EQGAGLSGGQRQRIAIAR 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 158 ALINGGEIILADEPTGALDSQSGlevLAILSELNR--HGHTVVMVTHDMTVARHAKRIIELRDGEIISD 224
Cdd:cd03252 152 ALIHNPRILIFDEATSALDYESE---HAIMRNMHDicAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQ 217
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
5-222 |
2.44e-27 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 110.06 E-value: 2.44e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGngsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLM-NIMGCLdVPDKGDYFINGQnaahlspdELART 83
Cdd:cd03269 1 LEVENVTKRFG----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIrMILGII-LPDSGEVLFDGK--------PLDIA 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREHIGFIFQRYHLIPDLSALGNveipAIYANSERGSRRMYATA----LLGRLGLKGREHHKPSELSGGQQQRVSIARAL 159
Cdd:cd03269 68 ARNRIGYLPEERGLYPKMKVIDQ----LVYLAQLKGLKKEEARRrideWLERLELSEYANKRVEELSKGNQQKVQFIAAV 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 160 INGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGEII 222
Cdd:cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMeLVEELCDRVLLLNKGRAV 207
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
4-224 |
1.12e-26 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 108.22 E-value: 1.12e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHlSPDElART 83
Cdd:cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAE-ARR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RrehIGFIFQRYHLIPDLSALGNVEipaiYANSERGSRRMYATA----LLGRLGLKGREHHKPSELSGGQQQRVSIARAL 159
Cdd:cd03266 79 R---LGFVSDSTGLYDRLTARENLE----YFAGLYGLKGDELTArleeLADRLGMEELLDRRVGGFSTGMRQKVAIARAL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 160 INGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEIISD 224
Cdd:cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQeVERLCDRVVVLHRGRVVYE 217
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
4-222 |
1.19e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 109.69 E-value: 1.19e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAhlSPDELART 83
Cdd:PRK13644 1 MIRLENVSYSYPDGTPA---LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTG--DFSKLQGI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RReHIGFIFQRyhliPDLSALG------------NVEIPAIyansergSRRMYATALLGRLGLKGREHHKPSELSGGQQQ 151
Cdd:PRK13644 76 RK-LVGIVFQN----PETQFVGrtveedlafgpeNLCLPPI-------EIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQ 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 152 RVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:PRK13644 144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIV 214
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
4-251 |
1.36e-26 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 114.03 E-value: 1.36e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKS-TLMNIMGCLDVPD----KGDYFINGQNAAHLSPD 78
Cdd:PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLPSPPvvypSGDIRFHGESLLHASEQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 79 ELARTRREHIGFIFQRyhliP--DLSALGNVEIPAIYANS-ERGSRRMYATA----LLGRLGL---KGREHHKPSELSGG 148
Cdd:PRK15134 85 TLRGVRGNKIAMIFQE----PmvSLNPLHTLEKQLYEVLSlHRGMRREAARGeilnCLDRVGIrqaAKRLTDYPHQLSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 149 QQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRH-GHTVVMVTHDMTVARhakriiELRDGEIISDSGS 227
Cdd:PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQElNMGLLFITHNLSIVR------KLADRVAVMQNGR 234
|
250 260
....*....|....*....|....
gi 979479175 228 CVSVTKTWRQTNSIRQSYWQTLFD 251
Cdd:PRK15134 235 CVEQNRAATLFSAPTHPYTQKLLN 258
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
7-224 |
1.54e-26 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 109.31 E-value: 1.54e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 7 LKGISRTYGNGSqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARtrre 86
Cdd:PRK10253 8 LRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR---- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 87 HIGFIFQRYHL-----IPDLSALGNVEIPAIYA-----NSERGSRRMYATallgrlGLKGREHHKPSELSGGQQQRVSIA 156
Cdd:PRK10253 82 RIGLLAQNATTpgditVQELVARGRYPHQPLFTrwrkeDEEAVTKAMQAT------GITHLADQSVDTLSGGQRQRAWIA 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 157 RALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVA-RHAKRIIELRDGEIISD 224
Cdd:PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNReKGYTLAAVLHDLNQAcRYASHLIALREGKIVAQ 225
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
1-209 |
2.92e-26 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 110.05 E-value: 2.92e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTY----GNGSQARTV--LKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAH 74
Cdd:PRK11308 2 QQPLLQAIDLKKHYpvkrGLFKPERLVkaLDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 75 LSPDELARTRREhIGFIFQR-Y-HLIPDLSALGNVEIP-AIYANSERGSRRMYATALLGRLGLKGrEHHK--PSELSGGQ 149
Cdd:PRK11308 82 ADPEAQKLLRQK-IQIVFQNpYgSLNPRKKVGQILEEPlLINTSLSAAERREKALAMMAKVGLRP-EHYDryPHMFSGGQ 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 150 QQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTV-VMVTHDMTVARH 209
Cdd:PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSyVFISHDLSVVEH 220
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
5-243 |
3.95e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 108.71 E-value: 3.95e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQARTV-LKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELART 83
Cdd:PRK13646 3 IRFDNVSYTYQKGTPYEHQaIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREHIGFIFQryhlIPDlSAL--GNVEIPAIYA----NSERGSRRMYATALLGRLGL-KGREHHKPSELSGGQQQRVSIA 156
Cdd:PRK13646 83 VRKRIGMVFQ----FPE-SQLfeDTVEREIIFGpknfKMNLDEVKNYAHRLLMDLGFsRDVMSQSPFQMSGGQMRKIAIV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 157 RALINGGEIILADEPTGALDSQSGLEVLAILSELN-RHGHTVVMVTHDMT-VARHAKRIIELRDGEIISDSgscvSVTKT 234
Cdd:PRK13646 158 SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQtDENKTIILVSHDMNeVARYADEVIVMKEGSIVSQT----SPKEL 233
|
....*....
gi 979479175 235 WRQTNSIRQ 243
Cdd:PRK13646 234 FKDKKKLAD 242
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-222 |
5.59e-26 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 107.32 E-value: 5.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGngsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKG--DYFING---QNAAHL 75
Cdd:PRK11701 3 DQPLLSVRGLTKLYG----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGevHYRMRDgqlRDLYAL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 76 SPDELARTRREHIGFIFQ--RYHLIPDLSALGNVEIPaIYANSERGSRRMYATAL--LGRLGL-KGREHHKPSELSGGQQ 150
Cdd:PRK11701 79 SEAERRRLLRTEWGFVHQhpRDGLRMQVSAGGNIGER-LMAVGARHYGDIRATAGdwLERVEIdAARIDDLPTTFSGGMQ 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 151 QRVSIARALINGGEIILADEPTGALDsqsgLEVLAILSELNRH-----GHTVVMVTHDMTVARH-AKRIIELRDGEII 222
Cdd:PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLD----VSVQARLLDLLRGlvrelGLAVVIVTHDLAVARLlAHRLLVMKQGRVV 231
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
4-222 |
6.87e-26 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 107.22 E-value: 6.87e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQARtvlkNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGD-YFINGQNAAH----LSPD 78
Cdd:TIGR02323 3 LLQVSGLSKSYGGGKGCR----DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTaTYIMRSGAELelyqLSEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 79 ELARTRREHIGFIFQ--RYHLIPDLSALGNV-EIPAIYANSERGSRRMYATALLGRLGL-KGREHHKPSELSGGQQQRVS 154
Cdd:TIGR02323 79 ERRRLMRTEWGFVHQnpRDGLRMRVSAGANIgERLMAIGARHYGNIRATAQDWLEEVEIdPTRIDDLPRAFSGGMQQRLQ 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 155 IARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGH-TVVMVTHDMTVAR-HAKRIIELRDGEII 222
Cdd:TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGlAVIIVTHDLGVARlLAQRLLVMQQGRVV 228
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
22-225 |
1.22e-25 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 105.88 E-value: 1.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 22 TVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGqnaahLSPDELARTRREHIGFIF-QRYHLIPD 100
Cdd:cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG-----LVPWKRRKKFLRRIGVVFgQKTQLWWD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 101 LSALGNVE-IPAIY--ANSERGSRRMYATALLGrlglKGREHHKP-SELSGGQQQRVSIARALINGGEIILADEPTGALD 176
Cdd:cd03267 110 LPVIDSFYlLAAIYdlPPARFKKRLDELSELLD----LEELLDTPvRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 979479175 177 SQSGLEVLAILSELNR-HGHTVVMVTHDM-TVARHAKRIIELRDGEIISDS 225
Cdd:cd03267 186 VVAQENIRNFLKEYNReRGTTVLLTSHYMkDIEALARRVLVIDKGRLLYDG 236
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
5-222 |
1.40e-25 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 107.03 E-value: 1.40e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQ-ARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFI------NGQNAAHLSP 77
Cdd:PRK13634 3 ITFQKVEHRYQYKTPfERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIgervitAGKKNKKLKP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 78 delartRREHIGFIFQ--RYHLI-----PDLsALGnveiPAIYANSERGSRRMyATALLGRLGLkGRE--HHKPSELSGG 148
Cdd:PRK13634 83 ------LRKKVGIVFQfpEHQLFeetveKDI-CFG----PMNFGVSEEDAKQK-AREMIELVGL-PEEllARSPFELSGG 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 149 QQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMT-VARHAKRIIELRDGEII 222
Cdd:PRK13634 150 QMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKeKGLTTVLVTHSMEdAARYADQIVVMHKGTVF 225
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
20-202 |
1.47e-25 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 104.36 E-value: 1.47e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 20 ARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAhlspdELARTRREHIGFIFQRYHLIP 99
Cdd:TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLA-----EQRDEPHENILYLGHLPGLKP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 100 DLSALGNVEipaIYANSERGSRRMYATAlLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQs 179
Cdd:TIGR01189 87 ELSALENLH---FWAAIHGGAQRTIEDA-LAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTTALDKA- 161
|
170 180
....*....|....*....|....*
gi 979479175 180 GLEVLAIL--SELNRHGhTVVMVTH 202
Cdd:TIGR01189 162 GVALLAGLlrAHLARGG-IVLLTTH 185
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
5-222 |
1.54e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 107.06 E-value: 1.54e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQ-ARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAhlspDELART 83
Cdd:PRK13637 3 IKIENLTHIYMEGTPfEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDIT----DKKVKL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 R--REHIGFIFQ--RYHLIPDlsalgNVEIPAIYANSERG------SRRMYATALLGRLGLKGREHHKPSELSGGQQQRV 153
Cdd:PRK13637 79 SdiRKKVGLVFQypEYQLFEE-----TIEKDIAFGPINLGlseeeiENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRV 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 154 SIARALINGGEIILADEPTGALDSQSGLEVLAILSELN-RHGHTVVMVTHDMT-VARHAKRIIELRDGEII 222
Cdd:PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHkEYNMTIILVSHSMEdVAKLADRIIVMNKGKCE 224
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
5-220 |
2.20e-25 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 104.09 E-value: 2.20e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQART-VLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDVPdKGDYFING------QNAAHLS 76
Cdd:cd03250 1 ISVEDASFTWDSGEQETSfTLKDINLEVPKGELVAIVGPVGSGKSSLLSaLLGELEKL-SGSVSVPGsiayvsQEPWIQN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 77 pdelaRTRREHIgfIF------QRYH-------LIPDLSALG---NVEIpaiyanSERGSrrmyatallgrlglkgrehh 140
Cdd:cd03250 80 -----GTIRENI--LFgkpfdeERYEkvikacaLEPDLEILPdgdLTEI------GEKGI-------------------- 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 141 kpsELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVL--AILSELnRHGHTVVMVTHDMTVARHAKRIIELRD 218
Cdd:cd03250 127 ---NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFenCILGLL-LNNKTRILVTHQLQLLPHADQIVVLDN 202
|
..
gi 979479175 219 GE 220
Cdd:cd03250 203 GR 204
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
4-214 |
2.62e-25 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 105.62 E-value: 2.62e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELART 83
Cdd:PRK11831 7 LVDMRGVSFTRGN----RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREhIGFIFQRYHLIPDLSALGNVEIPaIYANSERGSRRMYATAL--LGRLGLKGREHHKPSELSGGQQQRVSIARALIN 161
Cdd:PRK11831 83 RKR-MSMLFQSGALFTDMNVFDNVAYP-LREHTQLPAPLLHSTVMmkLEAVGLRGAAKLMPSELSGGMARRAALARAIAL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 162 GGEIILADEPTGALDSQSGLEVLAILSELNRH-GHTVVMVTHD----MTVARHA-----KRII 214
Cdd:PRK11831 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSAlGVTCVVVSHDvpevLSIADHAyivadKKIV 223
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1-221 |
3.55e-25 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 109.76 E-value: 3.55e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGngsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPdel 80
Cdd:PRK15439 8 APPLLCARSISKQYS----GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTP--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARTRREHIGFIFQRYHLIPDLSALGNveIPAIYANSERGSRRMyaTALLGRLGLKGREHHKPSELSGGQQQRVSIARALI 160
Cdd:PRK15439 81 AKAHQLGIYLVPQEPLLFPNLSVKEN--ILFGLPKRQASMQKM--KQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLM 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 161 NGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARH-AKRIIELRDGEI 221
Cdd:PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQlADRISVMRDGTI 218
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
19-222 |
3.83e-25 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 110.32 E-value: 3.83e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 19 QARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLdvPDKGDYFINGQNAAHLSPDELartrREHIGFIFQRYHL 97
Cdd:PRK11174 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNaLLGFL--PYQGSLKINGIELRELDPESW----RKHLSWVGQNPQL 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 98 ----IPDLSALGNVEIP--AIYANSERGsrrmYATALLGRL--GLkgreHHKPSE----LSGGQQQRVSIARALINGGEI 165
Cdd:PRK11174 435 phgtLRDNVLLGNPDASdeQLQQALENA----WVSEFLPLLpqGL----DTPIGDqaagLSVGQAQRLALARALLQPCQL 506
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 166 ILADEPTGALDSQSGLEVLAILSElNRHGHTVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:PRK11174 507 LLLDEPTASLDAHSEQLVMQALNA-ASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIV 562
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
5-231 |
6.50e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 104.83 E-value: 6.50e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQ-ARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELART 83
Cdd:PRK13649 3 INLQNVSYTYQAGTPfEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREHIGFIFQryhlIP-----DLSALGNVEI-PAIYANSERGSRRMyATALLGRLGLKGREHHK-PSELSGGQQQRVSIA 156
Cdd:PRK13649 83 IRKKVGLVFQ----FPesqlfEETVLKDVAFgPQNFGVSQEEAEAL-AREKLALVGISESLFEKnPFELSGGQMRRVAIA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 157 RALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGEIISdSGSCVSV 231
Cdd:PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMdDVANYADFVYVLEKGKLVL-SGKPKDI 232
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
7-221 |
6.75e-25 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 106.65 E-value: 6.75e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 7 LKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDElartrRE 86
Cdd:PRK11000 6 LRNVTKAYGD----VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE-----RG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 87 hIGFIFQRYHLIPDLSALGNVEIP---AIYANSERGSRRMYATALLGRLGLKGRehhKPSELSGGQQQRVSIARALINGG 163
Cdd:PRK11000 77 -VGMVFQSYALYPHLSVAENMSFGlklAGAKKEEINQRVNQVAEVLQLAHLLDR---KPKALSGGQRQRVAIGRTLVAEP 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 164 EIILADEPTGALDSQSGLEVLAILSELN-RHGHTVVMVTHD----MTVarhAKRIIELRDGEI 221
Cdd:PRK11000 153 SVFLLDEPLSNLDAALRVQMRIEISRLHkRLGRTMIYVTHDqveaMTL---ADKIVVLDAGRV 212
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
2-222 |
6.93e-25 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 103.50 E-value: 6.93e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 2 RKIIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDK---GDYFINGQnaaHLSPD 78
Cdd:cd03234 1 QRVLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGttsGQILFNGQ---PRKPD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 79 ELartrREHIGFIFQRYHLIPDLSALGNVEIPAIYA----NSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVS 154
Cdd:cd03234 78 QF----QKCVAYVRQDDILLPGLTVRETLTYTAILRlprkSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVS 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 155 IARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT--VARHAKRIIELRDGEII 222
Cdd:cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRsdLFRLFDRILLLSSGEIV 223
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
24-231 |
1.03e-24 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 103.38 E-value: 1.03e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLdVPDKGDYFINGQNAAHLSPDELARTRrehiGFIFQR--------- 94
Cdd:COG4138 12 LGPISAQVNAGELIHLIGPNGAGKSTLLARMAGL-LPGQGEILLNGRPLSDWSAAELARHR----AYLSQQqsppfampv 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 95 YHLIpdlsALGnveIPAIyANSERGSRRMYAtaLLGRLGLKGREHHKPSELSGGQQQRVSIARAL------IN-GGEIIL 167
Cdd:COG4138 87 FQYL----ALH---QPAG-ASSEAVEQLLAQ--LAEALGLEDKLSRPLTQLSGGEWQRVRLAAVLlqvwptINpEGQLLL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 168 ADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVA-RHAKRIIELRDGEIISdSGSCVSV 231
Cdd:COG4138 157 LDEPMNSLDVAQQAALDRLLRELCQQGITVVMSSHDLNHTlRHADRVWLLKQGKLVA-SGETAEV 220
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-219 |
1.25e-24 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 107.95 E-value: 1.25e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGnGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDEL 80
Cdd:PRK09700 2 ATPYISMAGIGKSFG-PVHA---LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARTrreHIGFIFQRYHLIPDLSALGNVEIPAIYANSERG-------SRRMYATALLGRLGLKGREHHKPSELSGGQQQRV 153
Cdd:PRK09700 78 AQL---GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGvniidwrEMRVRAAMMLLRVGLKVDLDEKVANLSISHKQML 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 154 SIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDG 219
Cdd:PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAeIRRICDRYTVMKDG 221
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
4-221 |
1.42e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 103.68 E-value: 1.42e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYgNGSQARTvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQnaaHLSPDELaRT 83
Cdd:PRK13648 7 IIVFKNVSFQY-QSDASFT-LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ---AITDDNF-EK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREHIGFIFQRyhliPDLSALGNV---EIPAIYANSERGSRRMY--ATALLGRLGLKGREHHKPSELSGGQQQRVSIARA 158
Cdd:PRK13648 81 LRKHIGIVFQN----PDNQFVGSIvkyDVAFGLENHAVPYDEMHrrVSEALKQVDMLERADYEPNALSGGQKQRVAIAGV 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSELNRHGH-TVVMVTHDMTVARHAKRIIELRDGEI 221
Cdd:PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNiTIISITHDLSEAMEADHVIVMNKGTV 220
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-222 |
1.76e-24 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 102.93 E-value: 1.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLM---NIMGCL--DVPDKGDYFINGQNAahL 75
Cdd:PRK14239 2 TEPILQVSDLSVYYNK----KKALNSVSLDFYPNEITALIGPSGSGKSTLLrsiNRMNDLnpEVTITGSIVYNGHNI--Y 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 76 SPDELARTRREHIGFIFQRYHLIPdLSALGNVeIPAIYANSERGSRRMYA---TALLGRL---GLKGREHHKPSELSGGQ 149
Cdd:PRK14239 76 SPRTDTVDLRKEIGMVFQQPNPFP-MSIYENV-VYGLRLKGIKDKQVLDEaveKSLKGASiwdEVKDRLHDSALGLSGGQ 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 150 QQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELnRHGHTVVMVTHDMTVA-RHAKRIIELRDGEII 222
Cdd:PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL-KDDYTMLLVTRSMQQAsRISDRTGFFLDGDLI 226
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
20-222 |
2.77e-24 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 107.60 E-value: 2.77e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 20 ARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartrREHIGFIFQ------ 93
Cdd:COG5265 370 ERPILKGVSFEVPAGKTVAIVGPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDVTQASL----RAAIGIVPQdtvlfn 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 94 ---RYHLipdlsALGNVEipAIYANSERGSRRM------------YATaLLGRLGLKgrehhkpseLSGGQQQRVSIARA 158
Cdd:COG5265 446 dtiAYNI-----AYGRPD--ASEEEVEAAARAAqihdfieslpdgYDT-RVGERGLK---------LSGGEKQRVAIART 508
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSELNRhGHTVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:COG5265 509 LLKNPPILIFDEATSALDSRTERAIQAALREVAR-GRTTLVIAHRLSTIVDADEILVLEAGRIV 571
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-223 |
3.84e-24 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 106.55 E-value: 3.84e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGnGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMgCLDVPD---KGDYFINGQNaahLSP 77
Cdd:PRK13549 2 MEYLLEMKNITKTFG-GVKA---LDNVSLKVRAGEIVSLCGENGAGKSTLMKVL-SGVYPHgtyEGEIIFEGEE---LQA 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 78 DELARTRREHIGFIFQRYHLIPDLSALGNveipaIYANSE--RGSR----RMY--ATALLGRLGLKGREHHKPSELSGGQ 149
Cdd:PRK13549 74 SNIRDTERAGIAIIHQELALVKELSVLEN-----IFLGNEitPGGImdydAMYlrAQKLLAQLKLDINPATPVGNLGLGQ 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 150 QQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEIIS 223
Cdd:PRK13549 149 QQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNeVKAISDTICVIRDGRHIG 223
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
5-222 |
4.85e-24 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 101.08 E-value: 4.85e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARTr 84
Cdd:cd03218 1 LRAENLSKRYGK----RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 reHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:cd03218 76 --GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDmtvARHAKRIIE----LRDGEII 222
Cdd:cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHN---VRETLSITDrayiIYEGKVL 212
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-221 |
9.56e-24 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 98.66 E-value: 9.56e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 2 RKIIELKGISrtygngsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELa 81
Cdd:cd03215 2 EPVLEVRGLS--------VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 82 rtRREHIGFI---FQRYHLIPDLSalgnveipaIYANsergsrrmyatALLGRLglkgrehhkpseLSGGQQQRVSIARA 158
Cdd:cd03215 73 --IRAGIAYVpedRKREGLVLDLS---------VAEN-----------IALSSL------------LSGGNQQKVVLARW 118
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGEI 221
Cdd:cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELdELLGLCDRILVMYEGRI 182
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1-225 |
1.13e-23 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 105.09 E-value: 1.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYgNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDEl 80
Cdd:PRK10762 1 MQALLQLKGIDKAF-PGVKA---LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKS- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 arTRREHIGFIFQRYHLIPDLSALGNveipaIYANSERGSR-------RMYATA--LLGRLGLKGREHHKPSELSGGQQQ 151
Cdd:PRK10762 76 --SQEAGIGIIHQELNLIPQLTIAEN-----IFLGREFVNRfgridwkKMYAEAdkLLARLNLRFSSDKLVGELSIGEQQ 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 152 RVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMtvarhaKRIIE-------LRDGEIISD 224
Cdd:PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL------KEIFEicddvtvFRDGQFIAE 222
|
.
gi 979479175 225 S 225
Cdd:PRK10762 223 R 223
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-224 |
1.52e-23 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 101.70 E-value: 1.52e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTY-----GNGSQA----------RTV--LKNVDLTIAAGEMVAIIGASGSGKSTLMNIM-GCLdVPDKGDY 65
Cdd:COG4586 1 IIEVENLSKTYrvyekEPGLKGalkglfrreyREVeaVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLtGIL-VPTSGEV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 66 FINGqnaahLSPdelARTRREH---IGFIF-QRYHLIPDLSALGNVEI-PAIYANSERGSRRMYATaLLGRLGLKGREhH 140
Cdd:COG4586 80 RVLG-----YVP---FKRRKEFarrIGVVFgQRSQLWWDLPAIDSFRLlKAIYRIPDAEYKKRLDE-LVELLDLGELL-D 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 141 KP-SELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMT-VARHAKRIIELR 217
Cdd:COG4586 150 TPvRQLSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNReRGTTILLTSHDMDdIEALCDRVIVID 229
|
....*..
gi 979479175 218 DGEIISD 224
Cdd:COG4586 230 HGRIIYD 236
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
23-234 |
2.89e-23 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 101.14 E-value: 2.89e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 23 VLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDvpDK----GDYF-INGQNAAHLSPDELARTRREHIGFIFQ--R 94
Cdd:COG4170 22 AVDRVSLTLNEGEIRGLVGESGSGKSLIAKaICGITK--DNwhvtADRFrWNGIDLLKLSPRERRKIIGREIAMIFQepS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 95 YHLIPDLSaLGNVEIPAIYANSERGS-------RRMYATALLGRLGLKgreHHK------PSELSGGQQQRVSIARALIN 161
Cdd:COG4170 100 SCLDPSAK-IGDQLIEAIPSWTFKGKwwqrfkwRKKRAIELLHRVGIK---DHKdimnsyPHELTEGECQKVMIAMAIAN 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 162 GGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDM-TVARHAKRIIELRDGEIIsDSGSCVSVTKT 234
Cdd:COG4170 176 QPRLLIADEPTNAMESTTQAQIFRLLARLNQlQGTSILLISHDLeSISQWADTITVLYCGQTV-ESGPTEQILKS 249
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
4-222 |
3.06e-23 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 103.73 E-value: 3.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGngSQARTVLK---NVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFIN-GQ---NAAHLS 76
Cdd:TIGR03269 279 IIKVRNVSKRYI--SVDRGVVKavdNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRvGDewvDMTKPG 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 77 PDELARTRReHIGFIFQRYHLIPDLSALGN------VEIP-------AIYANSERGSRRMYATALLGRLglkgrehhkPS 143
Cdd:TIGR03269 357 PDGRGRAKR-YIGILHQEYDLYPHRTVLDNlteaigLELPdelarmkAVITLKMVGFDEEKAEEILDKY---------PD 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 144 ELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVL-AILSELNRHGHTVVMVTHDMTVARH-AKRIIELRDGEI 221
Cdd:TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVThSILKAREEMEQTFIIVSHDMDFVLDvCDRAALMRDGKI 506
|
.
gi 979479175 222 I 222
Cdd:TIGR03269 507 V 507
|
|
| cbiO |
TIGR01166 |
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of ... |
23-207 |
3.87e-23 |
|
cobalt transport protein ATP-binding subunit; This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 130234 [Multi-domain] Cd Length: 190 Bit Score: 97.11 E-value: 3.87e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 23 VLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARtrREHIGFIFQRyhliPD-- 100
Cdd:TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER--RQRVGLVFQD----PDdq 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 101 -LSALGNVEI---PAIYANSERGSRRMYATALlGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALD 176
Cdd:TIGR01166 81 lFAADVDQDVafgPLNLGLSEAEVERRVREAL-TAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159
|
170 180 190
....*....|....*....|....*....|.
gi 979479175 177 SQSGLEVLAILSELNRHGHTVVMVTHDMTVA 207
Cdd:TIGR01166 160 PAGREQMLAILRRLRAEGMTVVISTHDVDLA 190
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
21-223 |
4.13e-23 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 99.48 E-value: 4.13e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARtrreHIGFIFQRyhlIPD 100
Cdd:PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR----KVAYLPQQ---LPA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 101 LSALGNVEIPAIYANSERGSrrmyatalLGRLGLKGREH---------HKP------SELSGGQQQRVSIARALINGGEI 165
Cdd:PRK10575 97 AEGMTVRELVAIGRYPWHGA--------LGRFGAADREKveeaislvgLKPlahrlvDSLSGGERQRAWIAMLVAQDSRC 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 166 ILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTV-ARHAKRIIELRDGEIIS 223
Cdd:PRK10575 169 LLLDEPTSALDIAHQVDVLALVHRLSQeRGLTVIAVLHDINMaARYCDYLVALRGGEMIA 228
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
5-220 |
4.19e-23 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 95.59 E-value: 4.19e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGdyfingqnaahlspdELARTR 84
Cdd:cd03221 1 IELENLSKTYGG----KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG---------------IVTWGS 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQryhlipdlsalgnveipaiyansergsrrmyatallgrlglkgrehhkpseLSGGQQQRVSIARALINGGE 164
Cdd:cd03221 62 TVKIGYFEQ---------------------------------------------------LSGGEKMRLALAKLLLENPN 90
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 165 IILADEPTGALDSQSgleVLAILSELNRHGHTVVMVTHDmtvaRH-----AKRIIELRDGE 220
Cdd:cd03221 91 LLLLDEPTNHLDLES---IEALEEALKEYPGTVILVSHD----RYfldqvATKIIELEDGK 144
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1-226 |
4.57e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 99.42 E-value: 4.57e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDEL 80
Cdd:PRK13647 1 MDNIIEVEDLHFRYKDGTKA---LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 artrREHIGFIFQRyhliPDLS----------ALG--NVEIpaiyANSERGSRrmyATALLGRLGLKGREHHKPSELSGG 148
Cdd:PRK13647 78 ----RSKVGLVFQD----PDDQvfsstvwddvAFGpvNMGL----DKDEVERR---VEEALKAVRMWDFRDKPPYHLSYG 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 149 QQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEIISDSG 226
Cdd:PRK13647 143 QKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDlAAEWADQVIVLKEGRVLAEGD 221
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
4-231 |
8.11e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 98.72 E-value: 8.11e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQArtVLKNVDLTIAAGEMVAIIGASGSGKSTLMNImgcldvpdkgdyfINGQnaahLSPDELART 83
Cdd:PRK13640 5 IVEFKHVSFTYPDSKKP--ALNDISFSIPRGSWTALIGHNGSGKSTISKL-------------INGL----LLPDDNPNS 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 R----------------REHIGFIFQRyhliPDLSALG-NVEIPAIYANSERGSRRMYATAL----LGRLGLKGREHHKP 142
Cdd:PRK13640 66 KitvdgitltaktvwdiREKVGIVFQN----PDNQFVGaTVGDDVAFGLENRAVPRPEMIKIvrdvLADVGMLDYIDSEP 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 143 SELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHDMTVARHAKRIIELRDGEI 221
Cdd:PRK13640 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLkKKNNLTVISITHDIDEANMADQVLVLDDGKL 221
|
250
....*....|
gi 979479175 222 IsDSGSCVSV 231
Cdd:PRK13640 222 L-AQGSPVEI 230
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
5-221 |
8.54e-23 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 100.30 E-value: 8.54e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQartVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDElartr 84
Cdd:PRK11650 4 LKLQAVRKSYDGKTQ---VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPAD----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REhIGFIFQRYHLIPDLSALGNVEipaiYANSERG------SRRMYATALLgrLGLKGREHHKPSELSGGQQQRVSIARA 158
Cdd:PRK11650 76 RD-IAMVFQNYALYPHMSVRENMA----YGLKIRGmpkaeiEERVAEAARI--LELEPLLDRKPRELSGGQRQRVAMGRA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 159 LINGGEIILADEPTGALDS----QSGLEvlaiLSELNRH-GHTVVMVTHD----MTVARhakRIIELRDGEI 221
Cdd:PRK11650 149 IVREPAVFLFDEPLSNLDAklrvQMRLE----IQRLHRRlKTTSLYVTHDqveaMTLAD---RVVVMNGGVA 213
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
2-216 |
1.03e-22 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 97.09 E-value: 1.03e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 2 RKIIELKGIsrtyGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDela 81
Cdd:PRK10247 5 SPLLQLQNV----GYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 82 rTRREHIGFIFQRYHLIPDlSALGNVEIPAIYANSERGSRRMYATalLGRLGLKGREHHKP-SELSGGQQQRVSIARALI 160
Cdd:PRK10247 78 -IYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDD--LERFALPDTILTKNiAELSGGEKQRISLIRNLQ 153
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 161 NGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDMTVARHAKRIIEL 216
Cdd:PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVReQNIAVLWVTHDKDEINHADKVITL 210
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-222 |
1.06e-22 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 97.68 E-value: 1.06e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 2 RKIIELKGISRTYGNGSqartVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCL-----DVPDKGDYFINGQNAAHLS 76
Cdd:PRK14247 1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLielypEARVSGEVYLDGQDIFKMD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 77 PDELartrREHIGFIFQRYHLIPDLSALGNVEI-PAI--YANSERGSRRMYATAL-LGRL--GLKGREHHKPSELSGGQQ 150
Cdd:PRK14247 77 VIEL----RRRVQMVFQIPNPIPNLSIFENVALgLKLnrLVKSKKELQERVRWALeKAQLwdEVKDRLDAPAGKLSGGQQ 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 151 QRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHgHTVVMVTH-DMTVARHAKRIIELRDGEII 222
Cdd:PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHfPQQAARISDYVAFLYKGQIV 224
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
22-260 |
1.12e-22 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 102.09 E-value: 1.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 22 TVLKNVDLTIAAGEMVAIIGASGSGKST----LMNImgcldVPDKGDYFINGQNAAHLSPDELARTRREhIGFIFQ--RY 95
Cdd:PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTtglaLLRL-----INSQGEIWFDGQPLHNLNRRQLLPVRHR-IQVVFQdpNS 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 96 HLIPDLSALG------NVEIPAIYAnSERGSRRMyatALLGRLGLKGREHHK-PSELSGGQQQRVSIARALINGGEIILA 168
Cdd:PRK15134 374 SLNPRLNVLQiieeglRVHQPTLSA-AQREQQVI---AVMEEVGLDPETRHRyPAEFSGGQRQRIAIARALILKPSLIIL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 169 DEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHDMTVARH-AKRIIELRDGEIIsDSGSCVSVtktwrqTNSIRQSYw 246
Cdd:PRK15134 450 DEPTSSLDKTVQAQILALLKSLqQKHQLAYLFISHDLHVVRAlCHQVIVLRQGEVV-EQGDCERV------FAAPQQEY- 521
|
250
....*....|....
gi 979479175 247 qtlfdrTRESLQMA 260
Cdd:PRK15134 522 ------TRQLLALS 529
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
4-223 |
1.28e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 98.65 E-value: 1.28e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYG-NGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELAR 82
Cdd:PRK13643 1 MIKFEKVNYTYQpNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 TRREHIGFIFQ--RYHLIPDlSALGNVEI-PAIYANSERGSRRMYATALlGRLGLKGREHHK-PSELSGGQQQRVSIARA 158
Cdd:PRK13643 81 PVRKKVGVVFQfpESQLFEE-TVLKDVAFgPQNFGIPKEKAEKIAAEKL-EMVGLADEFWEKsPFELSGGQMRRVAIAGI 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGEIIS 223
Cdd:PRK13643 159 LAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMdDVADYADYVYLLEKGHIIS 224
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
13-221 |
1.72e-22 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 101.75 E-value: 1.72e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 13 TYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIM-GCLdVPDKGDYFINGQNAAHLSPDELARtrreHIGFI 91
Cdd:COG4618 337 TVVPPGSKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLvGVW-PPTAGSVRLDGADLSQWDREELGR----HIGYL 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 92 FQRYHLIPD-----LSALGNVEIPAIYANSER-GSRRM-------YATallgRLGLKGrehhkpSELSGGQQQRVSIARA 158
Cdd:COG4618 412 PQDVELFDGtiaenIARFGDADPEKVVAAAKLaGVHEMilrlpdgYDT----RIGEGG------ARLSGGQRQRIGLARA 481
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIELRDGEI 221
Cdd:COG4618 482 LYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRPSLLAAVDKLLVLRDGRV 544
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
5-223 |
1.89e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 98.16 E-value: 1.89e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQAR-TVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKG-----DYFIngqnAAHLSP- 77
Cdd:PRK13645 7 IILDNVSYTYAKKTPFEfKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGqtivgDYAI----PANLKKi 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 78 DELARTRREhIGFIFQ--RYHLIPDLS----ALGNVEIPAiyaNSERGSRRMyaTALLGRLGLKgREHHK--PSELSGGQ 149
Cdd:PRK13645 83 KEVKRLRKE-IGLVFQfpEYQLFQETIekdiAFGPVNLGE---NKQEAYKKV--PELLKLVQLP-EDYVKrsPFELSGGQ 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 150 QQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDM-TVARHAKRIIELRDGEIIS 223
Cdd:PRK13645 156 KRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKeYKKRIIMVTHNMdQVLRIADEVIVMHEGKVIS 231
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
5-222 |
2.70e-22 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 95.64 E-value: 2.70e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQarTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:cd03244 3 IEFKNVSLRYRPNLP--PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDL---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQ---------RYHLIPdlsaLGNVEIPAIYANSERGSRRMYATALLGrlGLKGREHHKPSELSGGQQQRVSI 155
Cdd:cd03244 77 RSRISIIPQdpvlfsgtiRSNLDP----FGEYSDEELWQALERVGLKEFVESLPG--GLDTVVEEGGENLSVGQRQLLCL 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 156 ARALINGGEIILADEPTGALDSQSGLEVLAILSElNRHGHTVVMVTHDM-TVArHAKRIIELRDGEII 222
Cdd:cd03244 151 ARALLRKSKILVLDEATASVDPETDALIQKTIRE-AFKDCTVLTIAHRLdTII-DSDRILVLDKGRVV 216
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
21-216 |
2.85e-22 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 95.26 E-value: 2.85e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPD---ELArtrreHIGfifqryHL 97
Cdd:PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEyhqDLL-----YLG------HQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 98 --I-PDLSALGNVeipAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGA 174
Cdd:PRK13538 83 pgIkTELTALENL---RFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 979479175 175 LDSQSGLEVLAILSELNRHGHTVVMVTH-DMTVARHAKRIIEL 216
Cdd:PRK13538 160 IDKQGVARLEALLAQHAEQGGMVILTTHqDLPVASDKVRKLRL 202
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
26-231 |
4.38e-22 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 98.02 E-value: 4.38e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 26 NVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQ------NAAHLSPDelartrREHIGFIFQRYHLIP 99
Cdd:PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRvlfdaeKGICLPPE------KRRIGYVFQDARLFP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 100 DLSALGNVEipaiYANSErgSRRMYATALLGRLGLkgrEHH---KPSELSGGQQQRVSIARALINGGEIILADEPTGALD 176
Cdd:PRK11144 90 HYKVRGNLR----YGMAK--SMVAQFDKIVALLGI---EPLldrYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 177 SQSGLEVLAILSELNRHGHT-VVMVTHDM-TVARHAKRIIELRDGEIISdSGSCVSV 231
Cdd:PRK11144 161 LPRKRELLPYLERLAREINIpILYVSHSLdEILRLADRVVVLEQGKVKA-FGPLEEV 216
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
4-222 |
7.39e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 96.84 E-value: 7.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYG-NGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDY----FINGQNAAHLSPD 78
Cdd:PRK13631 21 ILRVKNLYCVFDeKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdIYIGDKKNNHELI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 79 ELARTR--------REHIGFIFQ--RYHLIPDL---------SALGNVEIPAiyansergsrRMYATALLGRLGLKGRE- 138
Cdd:PRK13631 101 TNPYSKkiknfkelRRRVSMVFQfpEYQLFKDTiekdimfgpVALGVKKSEA----------KKLAKFYLNKMGLDDSYl 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 139 HHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELR 217
Cdd:PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMeHVLEVADEVIVMD 250
|
....*
gi 979479175 218 DGEII 222
Cdd:PRK13631 251 KGKIL 255
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
5-222 |
8.77e-22 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 99.71 E-value: 8.77e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTY-GNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCL-DVpDKGDYFINGQNaahLSPDELAr 82
Cdd:PRK11176 342 IEFRNVTFTYpGKEVPA---LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFyDI-DEGEILLDGHD---LRDYTLA- 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 TRREHIGFIFQRYHLIPDLSAlGNVEipaiYANSERGSR-------RM-YATALLGRL--GLKGREHHKPSELSGGQQQR 152
Cdd:PRK11176 414 SLRNQVALVSQNVHLFNDTIA-NNIA----YARTEQYSReqieeaaRMaYAMDFINKMdnGLDTVIGENGVLLSGGQRQR 488
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 153 VSIARALINGGEIILADEPTGALDSQSGLEVLAILSEL--NRhghTVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:PRK11176 489 IAIARALLRDSPILILDEATSALDTESERAIQAALDELqkNR---TSLVIAHRLSTIEKADEILVVEDGEIV 557
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
5-227 |
1.16e-21 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 99.27 E-value: 1.16e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:PRK13657 335 VEFDDVSFSYDNSRQG---VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASL---- 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIpDLSALGNVEI---PAIYANSERGSRRMYATALLGR--LGLKGREHHKPSELSGGQQQRVSIARAL 159
Cdd:PRK13657 408 RRNIAVVFQDAGLF-NRSIEDNIRVgrpDATDEEMRAAAERAQAHDFIERkpDGYDTVVGERGRQLSGGERQRLAIARAL 486
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 160 INGGEIILADEPTGALDSQSGLEVLAILSELnRHGHTVVMVTHDMTVARHAKRIIELRDGEIIsDSGS 227
Cdd:PRK13657 487 LKDPPILILDEATSALDVETEAKVKAALDEL-MKGRTTFIIAHRLSTVRNADRILVFDNGRVV-ESGS 552
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
29-225 |
1.23e-21 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 93.76 E-value: 1.23e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 29 LTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAahlspdelaRTRREHIGFIFQRYHLIPD-------- 100
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP---------GKGWRHIGYVPQRHEFAWDfpisvaht 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 101 -LSalGNVEIPAIYANSERGSRRMYATALlGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQS 179
Cdd:TIGR03771 72 vMS--GRTGHIGWLRRPCVADFAAVRDAL-RRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 979479175 180 GLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIELRDGEIISDS 225
Cdd:TIGR03771 149 QELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADG 194
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
1-222 |
1.96e-21 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 94.00 E-value: 1.96e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRtygngSQARTVLKNVDLTIAAGEMVAIIGASGSGKStlMNIMGCLDVPDKGDYFINGQNAAHLSPDEL 80
Cdd:PRK10418 1 MPQQIELRNIAL-----QAAQPLVHGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARTRREHIGFIFQ------------RYHLIPDLSALGnveipaiyanseRGSRRMYATALLGRLGLKGRE---HHKPSEL 145
Cdd:PRK10418 74 CALRGRKIATIMQnprsafnplhtmHTHARETCLALG------------KPADDATLTAALEAVGLENAArvlKLYPFEM 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 146 SGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDM-TVARHAKRIIELRDGEII 222
Cdd:PRK10418 142 SGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQkRALGMLLVTHDMgVVARLADDVAVMSHGRIV 220
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
4-207 |
2.51e-21 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 94.08 E-value: 2.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLM---NIMGCLdVPD---KGDYFINGQN--AAHL 75
Cdd:PRK14243 10 VLRTENLNVYYGS----FLAVKNVWLDIPKNQITAFIGPSGCGKSTILrcfNRLNDL-IPGfrvEGKVTFHGKNlyAPDV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 76 SPDELartrREHIGFIFQRYHLIPDlsalgnveipAIYANSERGSR-------------RMYATALLGRlGLKGREHHKP 142
Cdd:PRK14243 85 DPVEV----RRRIGMVFQKPNPFPK----------SIYDNIAYGARingykgdmdelveRSLRQAALWD-EVKDKLKQSG 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 143 SELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHgHTVVMVTHDMTVA 207
Cdd:PRK14243 150 LSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQA 213
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1-226 |
3.09e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 94.00 E-value: 3.09e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNGSQARTvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQnaaHLSPDEL 80
Cdd:PRK13642 1 MNKILEVENLVFKYEKESDVNQ-LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGE---LLTAENV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARTRREhIGFIFQRyhliPDLSALG-NVEIPAIYANSERG-------SRRMYATALLGRLGLKGREhhkPSELSGGQQQR 152
Cdd:PRK13642 77 WNLRRK-IGMVFQN----PDNQFVGaTVEDDVAFGMENQGipreemiKRVDEALLAVNMLDFKTRE---PARLSGGQKQR 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 153 VSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGH-TVVMVTHDMTVARHAKRIIELRDGEIISDSG 226
Cdd:PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQlTVLSITHDLDEAASSDRILVMKAGEIIKEAA 223
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
4-221 |
5.22e-21 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 92.15 E-value: 5.22e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQ------------- 70
Cdd:cd03248 11 IVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKpisqyehkylhsk 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 71 -NAAHLSPDELARTRREHIGFifqryhlipdlsALGNVEIPAIYANSERGSRRMYATALlgRLGLKGREHHKPSELSGGQ 149
Cdd:cd03248 90 vSLVGQEPVLFARSLQDNIAY------------GLQSCSFECVKEAAQKAHAHSFISEL--ASGYDTEVGEKGSQLSGGQ 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 150 QQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHgHTVVMVTHDMTVARHAKRIIELRDGEI 221
Cdd:cd03248 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPER-RTVLVIAHRLSTVERADQILVLDGGRI 226
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
4-223 |
6.35e-21 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 96.43 E-value: 6.35e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMgCLDVPD---KGDYFINGQnaaHLSPDEL 80
Cdd:TIGR02633 1 LLEMKGIVKTFGG----VKALDGIDLEVRPGECVGLCGENGAGKSTLMKIL-SGVYPHgtwDGEIYWSGS---PLKASNI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARTRREHIGFIFQRYHLIPDLSALGNV----EI--PAIYANSERGSRRmyATALLGRLGLKGREHHKP-SELSGGQQQRV 153
Cdd:TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIflgnEItlPGGRMAYNAMYLR--AKNLLRELQLDADNVTRPvGDYGGGQQQLV 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 154 SIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEIIS 223
Cdd:TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNeVKAVCDTICVIRDGQHVA 221
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
21-216 |
8.37e-21 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 91.02 E-value: 8.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQnAAHLSPDELARTrrehIGFIFQRYHLIPD 100
Cdd:cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG-PLDFQRDSIARG----LLYLGHAPGIKTT 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 101 LSALGNVEIPAIYanserGSRRMYATALlGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSg 180
Cdd:cd03231 88 LSVLENLRFWHAD-----HSDEQVEEAL-ARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAG- 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 979479175 181 leVLAILSELNRH---GHTVVMVTH-DMTVARHAKRIIEL 216
Cdd:cd03231 161 --VARFAEAMAGHcarGGMVVLTTHqDLGLSEAGARELDL 198
|
|
| urea_trans_UrtE |
TIGR03410 |
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC ... |
6-223 |
8.50e-21 |
|
urea ABC transporter, ATP-binding protein UrtE; Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274567 [Multi-domain] Cd Length: 230 Bit Score: 91.43 E-value: 8.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 6 ELKGISRTYGnGSQartVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDvPDKGDYFINGQNAAHLSPDELARtr 84
Cdd:TIGR03410 2 EVSNLNVYYG-QSH---ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKtLMGLLP-VKSGSIRLDGEDITKLPPHERAR-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 rEHIGFIFQRYHLIPDLSALGNVEIPAiyANSERGSR----RMYA-----TALLGRLGlkgrehhkpSELSGGQQQRVSI 155
Cdd:TIGR03410 75 -AGIAYVPQGREIFPRLTVEENLLTGL--AALPRRSRkipdEIYElfpvlKEMLGRRG---------GDLSGGQQQQLAI 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 156 ARALINGGEIILADEPTGALDSQSGLEVLAILSELN-RHGHTVVMVTHDMTVARH-AKRIIELRDGEIIS 223
Cdd:TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRaEGGMAILLVEQYLDFARElADRYYVMERGRVVA 212
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
4-207 |
1.16e-20 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 92.95 E-value: 1.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGngsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAhlspdELART 83
Cdd:PRK13537 7 PIDFRNVEKRYG----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP-----SRARH 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGG 163
Cdd:PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 979479175 164 EIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVA 207
Cdd:PRK13537 158 DVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEA 201
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-222 |
1.20e-20 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 95.47 E-value: 1.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRtygngsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGcLDVPDKGDYFINGQNAAHLSPdelAR 82
Cdd:COG1129 256 VLEVEGLSV--------GGVVRDVSFSVRAGEILGIAGLVGAGRTELARaLFG-ADPADSGEIRLDGKPVRIRSP---RD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 TRREHIGFI---FQRYHLIPDLSALGNVEIPAIYANSERG---SRRMYATA--LLGRLGLKGREHHKP-SELSGGQQQRV 153
Cdd:COG1129 324 AIRAGIAYVpedRKGEGLVLDLSIRENITLASLDRLSRGGlldRRRERALAeeYIKRLRIKTPSPEQPvGNLSGGNQQKV 403
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 154 SIARALINGGEIILADEPT-----GALDsqsglEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEII 222
Cdd:COG1129 404 VLAKWLATDPKVLILDEPTrgidvGAKA-----EIYRLIRELAAEGKAVIVISSELPeLLGLSDRILVMREGRIV 473
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-222 |
1.80e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 91.44 E-value: 1.80e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNGSqartVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCL-----DVPDKGDYFINGQNAahL 75
Cdd:PRK14267 1 MKFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLlelneEARVEGEVRLFGRNI--Y 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 76 SPDELARTRREHIGFIFQRYHLIPDLSALGNVEIPAIYAN--------SERGSRRMYATALLGRLglKGREHHKPSELSG 147
Cdd:PRK14267 75 SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGlvkskkelDERVEWALKKAALWDEV--KDRLNDYPSNLSG 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 148 GQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHgHTVVMVTHD-MTVARHAKRIIELRDGEII 222
Cdd:PRK14267 153 GQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSpAQAARVSDYVAFLYLGKLI 227
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
6-219 |
2.01e-20 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 94.98 E-value: 2.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 6 ELKGISRTYgNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSpdelARTRR 85
Cdd:PRK11288 6 SFDGIGKTF-PGVKA---LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAS----TTAAL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 86 EH-IGFIFQRYHLIPDLSALGNV---EIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALIN 161
Cdd:PRK11288 78 AAgVAIIYQELHLVPEMTVAENLylgQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 162 GGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDG 219
Cdd:PRK11288 158 NARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMeEIFALCDAITVFKDG 216
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
22-206 |
3.29e-20 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 92.09 E-value: 3.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 22 TVLKNVDLTIAAGEMVAIIGASGSGKS-TLMNIMGCLDVPDK--GDYFINGQNAAHLSPDELARTRREHIGFIFQR---- 94
Cdd:PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSqTAFALMGLLAANGRigGSATFNGREILNLPEKELNKLRAEQISMIFQDpmts 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 95 ---YHLIPD---------------------LSALGNVEIPaiyanSERGSRRMYatallgrlglkgrehhkPSELSGGQQ 150
Cdd:PRK09473 110 lnpYMRVGEqlmevlmlhkgmskaeafeesVRMLDAVKMP-----EARKRMKMY-----------------PHEFSGGMR 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 151 QRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHT-VVMVTHDMTV 206
Cdd:PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTaIIMITHDLGV 224
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
5-228 |
3.82e-20 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 92.20 E-value: 3.82e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAahlsPDElARTR 84
Cdd:PRK13536 42 IDLAGVSKSYGD----KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV----PAR-ARLA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDLSALGNVeipAIYANSERGSRRMYATA---LLGRLGLKGREHHKPSELSGGQQQRVSIARALIN 161
Cdd:PRK13536 113 RARIGVVPQFDNLDLEFTVRENL---LVFGRYFGMSTREIEAVipsLLEFARLESKADARVSDLSGGMKRRLTLARALIN 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 162 GGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM----------TVARHAKRIIELRDGEIISDSGSC 228
Cdd:PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMeeaerlcdrlCVLEAGRKIAEGRPHALIDEHIGC 266
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
3-203 |
4.34e-20 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 94.23 E-value: 4.34e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 3 KIIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFIN--------GQNAAH 74
Cdd:TIGR03719 321 KVIEAENLTKAFGD----KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGetvklayvDQSRDA 396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 75 LSPDelaRTRREHI--GFifqryhlipDLSALGNVEIPaiyansergSRrmyatALLGRLGLKGREHHKP-SELSGGQQQ 151
Cdd:TIGR03719 397 LDPN---KTVWEEIsgGL---------DIIKLGKREIP---------SR-----AYVGRFNFKGSDQQKKvGQLSGGERN 450
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 979479175 152 RVSIARALINGGEIILADEPTGALDsqsgLEVLAILSE--LNRHGHTVVmVTHD 203
Cdd:TIGR03719 451 RVHLAKTLKSGGNVLLLDEPTNDLD----VETLRALEEalLNFAGCAVV-ISHD 499
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
5-231 |
6.69e-20 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 92.21 E-value: 6.69e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELART- 83
Cdd:PRK09536 4 IDVSDLSVEFGD----TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRv 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 ----RREHIGFIFQRYHLI-----PDLSALGNVEiPAIYANSERGSRRMYATALLGRlglkgrehhKPSELSGGQQQRVS 154
Cdd:PRK09536 80 asvpQDTSLSFEFDVRQVVemgrtPHRSRFDTWT-ETDRAAVERAMERTGVAQFADR---------PVTSLSGGERQRVL 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 155 IARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTV-ARHAKRIIELRDGEiISDSGSCVSV 231
Cdd:PRK09536 150 LARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLaARYCDELVLLADGR-VRAAGPPADV 226
|
|
| ADOP |
TIGR03434 |
Acidobacterial duplicated orphan permease; Members of this protein family are found, so far, ... |
376-643 |
8.42e-20 |
|
Acidobacterial duplicated orphan permease; Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Pssm-ID: 274576 [Multi-domain] Cd Length: 803 Bit Score: 94.12 E-value: 8.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 376 FRVKGIELLQGTTFRDD---RNALQEVIIDENTRKAIF-DDAGlqALGQIILLGSVPARVVGIARSSdYSDMPNRITVWM 451
Cdd:TIGR03434 120 FPVLGVQPALGRLFTPEddrPGAPPVVVLSYALWQRRFgGDPA--VVGRTIRLNGRPYTVVGVMPPG-FTFPGRDPDVWV 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 452 PYST------------VMYRMVGkpvlssisvRLKDNVNNEAA---ISAISQLLTRRHGVKD----FQVYNF-EQIKKSV 511
Cdd:TIGR03434 197 PLAMdpalagsanrgsRWLRVIG---------RLKPGVTLAQAqaeLDAIAARLAAAYPDTNagrgLAVTPLrESLVGDV 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 512 ERTsmtfsILILMVASIS-LMIGSIGVMNIMLVSVTERTHEIGVRMAVGARYGDIMQQFIIEAVLVCLIGGALGIALSYA 590
Cdd:TIGR03434 268 RPP-----LLVLLGAVGLvLLIACANVANLLLARAAARQREIAVRLALGAGRGRLVRQLLTESLLLALAGGALGLLLAYW 342
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 591 TGMLFTALGDE----MFTVIYSWQAAVTAFFCSTLIGMIFGYLPARKAARMDPIISL 643
Cdd:TIGR03434 343 GLRLLLALLPAslprLLEISLDGRVLLFALALSLLTGLLFGLAPALQATRSDLAEAL 399
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
21-229 |
1.10e-19 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 93.19 E-value: 1.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPD---KGDYFINGQNAAhlspdelARTRREHIGFIFQRYHL 97
Cdd:TIGR00955 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGvkgSGSVLLNGMPID-------AKEMRAISAYVQQDDLF 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 98 IPDLSAL------GNVEIPAIYANSERGSRrmyATALLGRLGLK-------GREHHKPSeLSGGQQQRVSIARALINGGE 164
Cdd:TIGR00955 111 IPTLTVRehlmfqAHLRMPRRVTKKEKRER---VDEVLQALGLRkcantriGVPGRVKG-LSGGERKRLAFASELLTDPP 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTvarhaKRIIELRDGEIISDSGSCV 229
Cdd:TIGR00955 187 LLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPS-----SELFELFDKIILMAEGRVA 246
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
4-171 |
2.71e-19 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 87.39 E-value: 2.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGcLDVPDKGDYFINGQNAAHLSPDELAR 82
Cdd:COG1137 3 TLEAENLVKSYGK----RTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYmIVG-LVKPDSGRIFLDGEDITHLPMHKRAR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 trrEHIGF------IFQRyhlipdLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIA 156
Cdd:COG1137 78 ---LGIGYlpqeasIFRK------LTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIA 148
|
170
....*....|....*
gi 979479175 157 RALINGGEIILADEP 171
Cdd:COG1137 149 RALATNPKFILLDEP 163
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
21-222 |
3.50e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 87.80 E-value: 3.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCL--------DVPDKGDYFinGQNAAHLSPDELartrREHIGFIF 92
Cdd:PRK14246 23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLieiydskiKVDGKVLYF--GKDIFQIDAIKL----RKEVGMVF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 93 QRYHLIPDLSALGNVEIP-AIYANSERGSRRMYATALLGRLGLKGREHHK----PSELSGGQQQRVSIARALINGGEIIL 167
Cdd:PRK14246 97 QQPNPFPHLSIYDNIAYPlKSHGIKEKREIKKIVEECLRKVGLWKEVYDRlnspASQLSGGQQQRLTIARALALKPKVLL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 168 ADEPTGALDSQSGLEVLAILSELNRHgHTVVMVTHD-MTVARHAKRIIELRDGEII 222
Cdd:PRK14246 177 MDEPTSMIDIVNSQAIEKLITELKNE-IAIVIVSHNpQQVARVADYVAFLYNGELV 231
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
4-223 |
3.74e-19 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 91.00 E-value: 3.74e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGnGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIM------GCLDvpdkGDYFINGqnaahlsp 77
Cdd:NF040905 1 ILEMRGITKTFP-GVKA---LDDVNLSVREGEIHALCGENGAGKSTLMKVLsgvyphGSYE----GEILFDG-------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 78 dELARTRR----EHIGF--IFQRYHLIPDLSALGNveipaIYANSERGSR--------RMYATALLGRLGLKGREHHKPS 143
Cdd:NF040905 65 -EVCRFKDirdsEALGIviIHQELALIPYLSIAEN-----IFLGNERAKRgvidwnetNRRARELLAKVGLDESPDTLVT 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 144 ELSGGQQQRVSIARALINGGEIILADEPTGAL---DSQSGLEvlaILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDG 219
Cdd:NF040905 139 DIGVGKQQLVEIAKALSKDVKLLILDEPTAALneeDSAALLD---LLLELKAQGITSIIISHKLNeIRRVADSITVLRDG 215
|
....
gi 979479175 220 EIIS 223
Cdd:NF040905 216 RTIE 219
|
|
| YbbP |
COG3127 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease ... |
256-640 |
4.27e-19 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442361 [Multi-domain] Cd Length: 830 Bit Score: 91.79 E-value: 4.27e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 256 SLQMALKAMNAHRLRttLTMIGIIFGIAAVVTVVALGEGAKQKTLEEIKS-LGTNVVriypgrdffddsVESIRTLIPAD 334
Cdd:COG3127 7 ALRLAWRDLRAGELR--LLLLALVLGVAAVAAVGSFSDRLQAGLARQARElLGGDLV------------LRSDQPLPAAW 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 335 ADALAKQGFVDSVSPEVSTSdnIRFLGKSAMASINGVG-----REHFRVKGIELLQGTTfrDDRNALQEVIIDEntrkAI 409
Cdd:COG3127 73 LAQARALGLRVSRTVEFRSM--ARAGDGSQLVEVKAVDgayplYGELELAPAPPLADAL--AGGPAPGEVWVDP----RL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 410 FDDAGLQaLGQIILLGSVPARVVGIA-----RSSDYSDMPNRitVWMPYSTVMYR---MVGKPVLSSISVRLKDnVNNEA 481
Cdd:COG3127 145 LARLGLK-VGDTIRLGDATFTIAGVLtrepdRGGGGFSLAPR--VLINLADLEATgliQPGSRVRYRYLVAGPD-ADLEA 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 482 AISAISQLLTRrhgvkDFQVYNFEQIKKSVERTSMTFSILILMVASISLMIGSIGVMNIMLVSVTERTHEIGVRMAVGAR 561
Cdd:COG3127 221 LRAWLEPALPA-----GQRVRTVEDARPELGRALDRAEQFLLLVALLALLLAGVAVANAARRYVARRLDTIALLRCLGAS 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 562 YGDIMQQFIIEAVLVCLIGGALGIALSYATGMLFTALGDEMFTVI----YSWQAAVTAFFCSTLIGMIFGYLPARKAARM 637
Cdd:COG3127 296 RRQIFRIYLLQLLLLGLLGSLLGLLLGALLQALLAALLADLLPVPlepaLSPLPLLLGLLVGLLVLLLFALPPLLRLRRV 375
|
...
gi 979479175 638 DPI 640
Cdd:COG3127 376 PPL 378
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-224 |
4.30e-19 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 87.06 E-value: 4.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTY------------------GNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDK 62
Cdd:COG1134 1 MSSMIEVENVSKSYrlyhepsrslkelllrrrRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 63 GDYFINGQNAAHLSpdelartrrehIGFIFQryhliPDLSALGNVeipaiyansergsrRMYATAllgrLGLKGREHHKP 142
Cdd:COG1134 81 GRVEVNGRVSALLE-----------LGAGFH-----PELTGRENI--------------YLNGRL----LGLSRKEIDEK 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 143 -------SEL-----------SGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM 204
Cdd:COG1134 127 fdeivefAELgdfidqpvktySSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESGRTVIFVSHSM 206
|
250 260
....*....|....*....|.
gi 979479175 205 -TVARHAKRIIELRDGEIISD 224
Cdd:COG1134 207 gAVRRLCDRAIWLEKGRLVMD 227
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
4-222 |
1.10e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 86.83 E-value: 1.10e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQnaahlsPDELAR- 82
Cdd:PRK13636 5 ILKVEELNYNYSDGTHA---LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGK------PIDYSRk 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 ---TRREHIGFIFQRY-HLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARA 158
Cdd:PRK13636 76 glmKLRESVGMVFQDPdNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSELNRH-GHTVVMVTHDM-TVARHAKRIIELRDGEII 222
Cdd:PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKElGLTIIIATHDIdIVPLYCDNVFVMKEGRVI 221
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
21-202 |
1.27e-18 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 84.54 E-value: 1.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPdelartrREHIGFIFQRYHLIPD 100
Cdd:PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV-------AEACHYLGHRNAMKPA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 101 LSALGNVEIPAIYanseRGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSqSG 180
Cdd:PRK13539 88 LTVAENLEFWAAF----LGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA-AA 162
|
170 180
....*....|....*....|....
gi 979479175 181 LEVLA--ILSELNRHGhTVVMVTH 202
Cdd:PRK13539 163 VALFAelIRAHLAQGG-IVIAATH 185
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
19-224 |
1.27e-18 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 86.42 E-value: 1.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 19 QARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIM-GCLDVPD-------KGDYFINGQNAAHLSPDELARTR-----R 85
Cdd:PRK13547 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALaGDLTGGGaprgarvTGDVTLNGEPLAAIDAPRLARLRavlpqA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 86 EHIGFIFQryhlIPDLSALGNveipaiYANSERG---SRR-----MYATALLGRLGLKGREhhkPSELSGGQQQRVSIAR 157
Cdd:PRK13547 92 AQPAFAFS----AREIVLLGR------YPHARRAgalTHRdgeiaWQALALAGATALVGRD---VTTLSGGELARVQFAR 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 158 AL---------INGGEIILADEPTGALDSQSGLEVLAILSELNRHGHT-VVMVTHDMTV-ARHAKRIIELRDGEIISD 224
Cdd:PRK13547 159 VLaqlwpphdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLgVLAIVHDPNLaARHADRIAMLADGAIVAH 236
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
1-221 |
1.30e-18 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 90.17 E-value: 1.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNGSQaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQN--------- 71
Cdd:TIGR00958 475 LEGLIEFQDVSFSYPNRPD-VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPlvqydhhyl 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 72 -----AAHLSPDELARTRREHIGFIFQRYhlipDLSALGNVEIPAIYANSERGSRRMYATallgRLGLKGrehhkpSELS 146
Cdd:TIGR00958 554 hrqvaLVGQEPVLFSGSVRENIAYGLTDT----PDEEIMAAAKAANAHDFIMEFPNGYDT----EVGEKG------SQLS 619
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 979479175 147 GGQQQRVSIARALINGGEIILADEPTGALDSQSGlevlAILSEL-NRHGHTVVMVTHDMTVARHAKRIIELRDGEI 221
Cdd:TIGR00958 620 GGQKQRIAIARALVRKPRVLILDEATSALDAECE----QLLQESrSRASRTVLLIAHRLSTVERADQILVLKKGSV 691
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
5-222 |
1.77e-18 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 89.09 E-value: 1.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDV--PDKGDYFIN-------------- 68
Cdd:TIGR03269 1 IEVKNLTKKFDG----KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQyePTSGRIIYHvalcekcgyverps 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 69 --GQN------------AAHLSPDELARTR-REHIGFIFQR-YHLIPDLSALGNVeIPAIYANSERGSRRMY-ATALLGR 131
Cdd:TIGR03269 77 kvGEPcpvcggtlepeeVDFWNLSDKLRRRiRKRIAIMLQRtFALYGDDTVLDNV-LEALEEIGYEGKEAVGrAVDLIEM 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 132 LGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTH-DMTVARH 209
Cdd:TIGR03269 156 VQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAvKASGISMVLTSHwPEVIEDL 235
|
250
....*....|...
gi 979479175 210 AKRIIELRDGEII 222
Cdd:TIGR03269 236 SDKAIWLENGEIK 248
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
21-219 |
2.21e-18 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 89.10 E-value: 2.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIM--------GCLDVPDKGDYFingqnaahlspdelartrrehigFIF 92
Cdd:COG4178 376 RPLLEDLSLSLKPGERLLITGPSGSGKSTLLRAIaglwpygsGRIARPAGARVL-----------------------FLP 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 93 QRYHLIPD--LSALgnveipaIYANSERG-SRRMYATAL----LGRLGLK-GREHHKPSELSGGQQQRVSIARALINGGE 164
Cdd:COG4178 433 QRPYLPLGtlREAL-------LYPATAEAfSDAELREALeavgLGHLAERlDEEADWDQVLSLGEQQRLAFARLLLHKPD 505
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNRHGhTVVMVTHDMTVARHAKRIIELRDG 219
Cdd:COG4178 506 WLFLDEATSALDEENEAALYQLLREELPGT-TVISVGHRSTLAAFHDRVLELTGD 559
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
4-236 |
2.66e-18 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 86.33 E-value: 2.66e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKS-TLMNIMGCLDVPDK---GDYFINGQNAAHLSPDE 79
Cdd:PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSvSSLAIMGLIDYPGRvmaEKLEFNGQDLQRISEKE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 80 lartRREHIG----FIFQ--RYHLIPDLS-ALGNVEIPAIYANSERGSRRMYATALLGRLGL---KGREHHKPSELSGGQ 149
Cdd:PRK11022 83 ----RRNLVGaevaMIFQdpMTSLNPCYTvGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIpdpASRLDVYPHQLSGGM 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 150 QQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGH-TVVMVTHDMT-VARHAKRIIELRDGEIIsDSGS 227
Cdd:PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENmALVLITHDLAlVAEAAHKIIVMYAGQVV-ETGK 237
|
....*....
gi 979479175 228 CVSVTKTWR 236
Cdd:PRK11022 238 AHDIFRAPR 246
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
21-224 |
4.44e-18 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 83.74 E-value: 4.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSP-----DELarTRREHIGF----- 90
Cdd:cd03220 35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLgggfnPEL--TGRENIYLngrll 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 91 ------IFQRYHLIPDLSALGN-VEIPAiyansergsrRMYATALLGRLGLkgrehhkpselsggqqqrvSIARALinGG 163
Cdd:cd03220 113 glsrkeIDEKIDEIIEFSELGDfIDLPV----------KTYSSGMKARLAF-------------------AIATAL--EP 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 164 EIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGEIISD 224
Cdd:cd03220 162 DILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPsSIKRLCDRALVLEKGKIRFD 223
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
3-203 |
5.36e-18 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 87.48 E-value: 5.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 3 KIIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGcLDVPDKGDYFIN--------GQNAA 73
Cdd:PRK11819 323 KVIEAENLSKSFGD----RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKmITG-QEQPDSGTIKIGetvklayvDQSRD 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 74 HLSPDelaRTRREHI--GFifqryhlipDLSALGNVEIPaiyansergSRrmyatALLGRLGLKGREHHKP-SELSGGQQ 150
Cdd:PRK11819 398 ALDPN---KTVWEEIsgGL---------DIIKVGNREIP---------SR-----AYVGRFNFKGGDQQKKvGVLSGGER 451
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 151 QRVSIARALINGGEIILADEPTGALDsqsgLEVLAILSE--LNRHGhTVVMVTHD 203
Cdd:PRK11819 452 NRLHLAKTLKQGGNVLLLDEPTNDLD----VETLRALEEalLEFPG-CAVVISHD 501
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
1-231 |
5.41e-18 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 84.46 E-value: 5.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRT--YGNG---SQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHl 75
Cdd:PRK15112 1 VETLLEVRNLSKTfrYRTGwfrRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 76 sPDELARTRRehIGFIF----------QRYHLIPDLSALGNVEIpaiyaNSERGSRRMYATalLGRLGLKgREH--HKPS 143
Cdd:PRK15112 80 -GDYSYRSQR--IRMIFqdpstslnprQRISQILDFPLRLNTDL-----EPEQREKQIIET--LRQVGLL-PDHasYYPH 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 144 ELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELN-RHGHTVVMVTHDMTVARH-AKRIIELRDGEI 221
Cdd:PRK15112 149 MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQeKQGISYIYVTQHLGMMKHiSDQVLVMHQGEV 228
|
250
....*....|
gi 979479175 222 IsDSGSCVSV 231
Cdd:PRK15112 229 V-ERGSTADV 237
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
3-226 |
8.32e-18 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 86.95 E-value: 8.32e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 3 KIIELKGISRTYGNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELar 82
Cdd:PRK10522 321 QTLELRNVTFAYQDNGFS---VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDY-- 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 trREHIGFIFQRYHLIPDLSALGNVEI-PAIYANsergsrrmyataLLGRLGLKGR---EHHKPS--ELSGGQQQRVSIA 156
Cdd:PRK10522 396 --RKLFSAVFTDFHLFDQLLGPEGKPAnPALVEK------------WLERLKMAHKlelEDGRISnlKLSKGQKKRLALL 461
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 157 RALINGGEIILADEPTGALDSQSGLEV-LAILSELNRHGHTVVMVTHDMTVARHAKRIIELRDGEIISDSG 226
Cdd:PRK10522 462 LALAEERDILLLDEWAADQDPHFRREFyQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTG 532
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
30-227 |
1.02e-17 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 83.06 E-value: 1.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 30 TIAAGEMVAIIGASGSGKSTLMNIMGCLdVPDKGDYFINGQNAAHLSPDELARTRrehiGFIFQR---------YHLI-- 98
Cdd:PRK03695 18 EVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHR----AYLSQQqtppfampvFQYLtl 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 99 --PDLSALGNVEiPAIYAnsergsrrmyataLLGRLGLKGREHHKPSELSGGQQQRVSIARAL------IN-GGEIILAD 169
Cdd:PRK03695 93 hqPDKTRTEAVA-SALNE-------------VAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVlqvwpdINpAGQLLLLD 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 170 EPTGALD--SQSGLEVLaiLSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEIISdSGS 227
Cdd:PRK03695 159 EPMNSLDvaQQAALDRL--LSELCQQGIAVVMSSHDLNhTLRHADRVWLLKQGKLLA-SGR 216
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-204 |
1.02e-17 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 83.12 E-value: 1.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGnGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDEL 80
Cdd:PRK11300 2 SQPLLSVSGLMMRFG-GLLA---VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARtrrehIGFI--FQRYHLIPDLSALGNVEI-----------------PAiYANSERGSRRmYATALLGRLGLKGREHHK 141
Cdd:PRK11300 78 AR-----MGVVrtFQHVRLFREMTVIENLLVaqhqqlktglfsgllktPA-FRRAESEALD-RAATWLERVGLLEHANRQ 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 142 PSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTHDM 204
Cdd:PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNeHNVTVLLIEHDM 214
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-222 |
2.45e-17 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 85.46 E-value: 2.45e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTygnGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPdelaRT 83
Cdd:COG3845 257 VLEVENLSVR---DDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDITGLSP----RE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREH-IGFI---FQRYHLIPDLS-----ALGNVEIPAiYANS---ERGSRRMYATALLGRLGLKGR-EHHKPSELSGGQQ 150
Cdd:COG3845 330 RRRLgVAYIpedRLGRGLVPDMSvaenlILGRYRRPP-FSRGgflDRKAIRAFAEELIEEFDVRTPgPDTPARSLSGGNQ 408
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 151 QRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEII 222
Cdd:COG3845 409 QKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLELRDAGAAVLLISEDLDeILALSDRIAVMYEGRIV 481
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
13-221 |
2.63e-17 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 85.48 E-value: 2.63e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 13 TYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARtrreHIGFIF 92
Cdd:TIGR01842 323 TIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK----HIGYLP 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 93 QRYHLIP-----DLSALG-NVEIPAIYANSE-RGSRRM-------YATALlgrlGLKGrehhkpSELSGGQQQRVSIARA 158
Cdd:TIGR01842 399 QDVELFPgtvaeNIARFGeNADPEKIIEAAKlAGVHELilrlpdgYDTVI----GPGG------ATLSGGQRQRIALARA 468
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIELRDGEI 221
Cdd:TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRI 531
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
5-226 |
3.00e-17 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 85.23 E-value: 3.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQART-VLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNaahLSPDELART 83
Cdd:COG4615 328 LELRGVTYRYPGEDGDEGfTLGPIDLTIRRGELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQP---VTADNREAY 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 rREHIGFIFQRYHLIPDLSALGNVEIPAIyansergsrrmyATALLGRLGLkgreHHKPS---------ELSGGQQQRVS 154
Cdd:COG4615 405 -RQLFSAVFSDFHLFDRLLGLDGEADPAR------------ARELLERLEL----DHKVSvedgrfsttDLSQGQRKRLA 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 155 IARALINGGEIILADEptgaldsqsglevLA--------------ILSELNRHGHTVVMVTHDMTVARHAKRIIELRDGE 220
Cdd:COG4615 468 LLVALLEDRPILVFDE-------------WAadqdpefrrvfyteLLPELKARGKTVIAISHDDRYFDLADRVLKMDYGK 534
|
....*.
gi 979479175 221 IISDSG 226
Cdd:COG4615 535 LVELTG 540
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
24-209 |
4.37e-17 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 82.83 E-value: 4.37e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVD---LTIAAGEMVAIIGASGSGKSTLMN-IMGCLDVPDkGDYFINGQNAAHLSPDELARTRREhIGFIFQR--YHL 97
Cdd:PRK15079 34 LKAVDgvtLRLYEGETLGVVGESGCGKSTFARaIIGLVKATD-GEVAWLGKDLLGMKDDEWRAVRSD-IQMIFQDplASL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 98 IPDLSaLGnvEIPA-----IYANSERGSRRMYATALLGRLGLKGREHHK-PSELSGGQQQRVSIARALINGGEIILADEP 171
Cdd:PRK15079 112 NPRMT-IG--EIIAeplrtYHPKLSRQEVKDRVKAMMLKVGLLPNLINRyPHEFSGGQCQRIGIARALILEPKLIICDEP 188
|
170 180 190
....*....|....*....|....*....|....*....
gi 979479175 172 TGALDSQSGLEVLAILSELNRH-GHTVVMVTHDMTVARH 209
Cdd:PRK15079 189 VSALDVSIQAQVVNLLQQLQREmGLSLIFIAHDLAVVKH 227
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
17-224 |
1.21e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 80.53 E-value: 1.21e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 17 GSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDvpDK-------GDYFINGQNAAHLSpDELARTRRehIG 89
Cdd:PRK14271 30 GFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMN--DKvsgyrysGDVLLGGRSIFNYR-DVLEFRRR--VG 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 90 FIFQRYHLIPdLSALGNVeIPAIYANS--ERGSRRMYATALLGRLGL----KGREHHKPSELSGGQQQRVSIARALINGG 163
Cdd:PRK14271 105 MLFQRPNPFP-MSIMDNV-LAGVRAHKlvPRKEFRGVAQARLTEVGLwdavKDRLSDSPFRLSGGQQQLLCLARTLAVNP 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 164 EIILADEPTGALDSQSGLEVLAILSELNRHgHTVVMVTHDMT-VARHAKRIIELRDGEIISD 224
Cdd:PRK14271 183 EVLLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAqAARISDRAALFFDGRLVEE 243
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
21-222 |
1.45e-16 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 78.34 E-value: 1.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDV-PDKGDYFINGQNAAHLSPDELArtrREHIGFIFQRyhli 98
Cdd:cd03217 13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKtIMGHPKYeVTEGEILFKGEDITDLPPEERA---RLGIFLAFQY---- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 99 PdlsalgnVEIPAIyANSErgsrrmyataLLGRLGLKgrehhkpseLSGGQQQRVSIARALINGGEIILADEPTGALDSQ 178
Cdd:cd03217 86 P-------PEIPGV-KNAD----------FLRYVNEG---------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDID 138
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 979479175 179 SGLEVLAILSELNRHGHTVVMVTHDMTVARHAK--RIIELRDGEII 222
Cdd:cd03217 139 ALRLVAEVINKLREEGKSVLIITHYQRLLDYIKpdRVHVLYDGRIV 184
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
5-204 |
3.01e-16 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 79.16 E-value: 3.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDVPdKGDYFINGQNAAHLSPDELAR- 82
Cdd:PRK15056 7 IVVNDVTVTWRNG---HTALRDASFTVPGGSIAALVGVNGSGKSTLFKaLMGFVRLA-SGKISILGQPTRQALQKNLVAy 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 -TRREHIGFIFQRyhLIPDLSALGNVEIPAIYANSERGSRRMyATALLGRLGLKGREHHKPSELSGGQQQRVSIARALIN 161
Cdd:PRK15056 83 vPQSEEVDWSFPV--LVEDVVMMGRYGHMGWLRRAKKRDRQI-VTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ 159
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 979479175 162 GGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM 204
Cdd:PRK15056 160 QGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL 202
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-204 |
4.46e-16 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 78.23 E-value: 4.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGdyfingqnaahlspdEL 80
Cdd:PRK09544 1 MTSLVSLENVSVSFGQ----RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG---------------VI 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARTRREHIGFIFQRYHLIPDLsalgnveiPAIYANSER---GSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIAR 157
Cdd:PRK09544 62 KRNGKLRIGYVPQKLYLDTTL--------PLTVNRFLRlrpGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLAR 133
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 979479175 158 ALINGGEIILADEPTGALDSQSGLEVLAILSELNRH-GHTVVMVTHDM 204
Cdd:PRK09544 134 ALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRElDCAVLMVSHDL 181
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
27-227 |
6.72e-16 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 79.46 E-value: 6.72e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 27 VDLTIAAGEMVAIIGASGSGKSTLMNIMgCLDVPDK----GDYF-INGQNAAHLSPDELARTRREHIGFIFQRYHLIPDL 101
Cdd:PRK15093 26 VSMTLTEGEIRGLVGESGSGKSLIAKAI-CGVTKDNwrvtADRMrFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDP 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 102 SA-LGNVEIPAIYANSERGS-------RRMYATALLGRLGLKGRE---HHKPSELSGGQQQRVSIARALINGGEIILADE 170
Cdd:PRK15093 105 SErVGRQLMQNIPGWTYKGRwwqrfgwRKRRAIELLHRVGIKDHKdamRSFPYELTEGECQKVMIAIALANQPRLLIADE 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 171 PTGALDSQSGLEVLAILSELNRHGH-TVVMVTHDM-TVARHAKRIIELRDGEIISDSGS 227
Cdd:PRK15093 185 PTNAMEPTTQAQIFRLLTRLNQNNNtTILLISHDLqMLSQWADKINVLYCGQTVETAPS 243
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
24-222 |
7.41e-16 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 81.05 E-value: 7.41e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARTRREhIGFIFQRYH--LIPDL 101
Cdd:PRK10261 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRD-IQFIFQDPYasLDPRQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 102 SALGNVEIPAI---YANSERGSRRMyaTALLGRLGLKgREH--HKPSELSGGQQQRVSIARALINGGEIILADEPTGALD 176
Cdd:PRK10261 419 TVGDSIMEPLRvhgLLPGKAAAARV--AWLLERVGLL-PEHawRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 979479175 177 SQSGLEVLAILSELNRH-GHTVVMVTHDMTVA-RHAKRIIELRDGEII 222
Cdd:PRK10261 496 VSIRGQIINLLLDLQRDfGIAYLFISHDMAVVeRISHRVAVMYLGQIV 543
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
5-204 |
3.15e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 76.23 E-value: 3.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYgngsQARTVLKNVDLTIAAGEMVAIIGASGSGKSTL---MNIMGCLD----VPDKGDYFinGQNAAHLSP 77
Cdd:PRK14258 8 IKVNNLSFYY----DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFlkcLNRMNELEsevrVEGRVEFF--NQNIYERRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 78 DeLARTRREhIGFIFQRYHLIP----DLSALG--------NVEIPAIYANSergsrrMYATALLGRLglKGREHHKPSEL 145
Cdd:PRK14258 82 N-LNRLRRQ-VSMVHPKPNLFPmsvyDNVAYGvkivgwrpKLEIDDIVESA------LKDADLWDEI--KHKIHKSALDL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 146 SGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELN-RHGHTVVMVTHDM 204
Cdd:PRK14258 152 SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRlRSELTMVIVSHNL 211
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-227 |
3.92e-15 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 75.30 E-value: 3.92e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLspdEL 80
Cdd:PRK11614 2 EKVMLSFDKVSAHYGK----IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDW---QT 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARTRREHIGFIFQRYHLIPDLSALGNVEIPAIYANSERGSRRM-YATALLGRLglKGREHHKPSELSGGQQQRVSIARAL 159
Cdd:PRK11614 75 AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIkWVYELFPRL--HERRIQRAGTMSGGEQQMLAIGRAL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 160 INGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVA-RHAKRIIELRDGEII-SDSGS 227
Cdd:PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQAlKLADRGYVLENGHVVlEDTGD 222
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
19-237 |
5.14e-15 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 75.81 E-value: 5.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 19 QARTVLKNVDLTIAAGEMVAIIGASGSGKSTL-MNIMGCLDvPDKGDYFINGQNAAHLSPDELARtrREHIGFIFQR--- 94
Cdd:PRK13638 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLfMNLSGLLR-PQKGAVLWQGKPLDYSKRGLLAL--RQQVATVFQDpeq 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 95 ---YHLI-PDLS-ALGNVEIPaiyaNSERGSRRMYATALLGRLGLKgrehHKPSE-LSGGQQQRVSIARALINGGEIILA 168
Cdd:PRK13638 89 qifYTDIdSDIAfSLRNLGVP----EAEITRRVDEALTLVDAQHFR----HQPIQcLSHGQKKRVAIAGALVLQARYLLL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 979479175 169 DEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARH-AKRIIELRDGEIIS--DSGSCVSVTKTWRQ 237
Cdd:PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEiSDAVYVLRQGQILThgAPGEVFACTEAMEQ 232
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
24-219 |
6.29e-15 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 74.29 E-value: 6.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLM-NIMGCLDVPDKGDYFINGQNAAHLSPDELARTR-----------------R 85
Cdd:cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLlAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRysvayaaqkpwllnatvE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 86 EHIGFIF----QRYHLIPDLSALG-NVEIPAIYANSERGSRRMyatallgrlglkgrehhkpsELSGGQQQRVSIARALI 160
Cdd:cd03290 97 ENITFGSpfnkQRYKAVTDACSLQpDIDLLPFGDQTEIGERGI--------------------NLSGGQRQRICVARALY 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 161 NGGEIILADEPTGALDSQSGLEVL--AILSELNRHGHTVVMVTHDMTVARHAKRIIELRDG 219
Cdd:cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMqeGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
2-202 |
6.97e-15 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 74.22 E-value: 6.97e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 2 RKIIELKGISRtygnGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCL-DVPDKGDYFINGQNaahlSPDE 79
Cdd:COG2401 28 AIVLEAFGVEL----RVVERYVLRDLNLEIEPGEIVLIVGASGSGKSTLLRlLAGALkGTPVAGCVDVPDNQ----FGRE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 80 LArtrrehigfifqryhLIPDLSALGNVEIpaiyansergsrrmyATALLGRLGLKG-----RehhKPSELSGGQQQRVS 154
Cdd:COG2401 100 AS---------------LIDAIGRKGDFKD---------------AVELLNAVGLSDavlwlR---RFKELSTGQKFRFR 146
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 979479175 155 IARALINGGEIILADEPTGALDSQSGLEVLAILSELNR-HGHTVVMVTH 202
Cdd:COG2401 147 LALLLAERPKLLVIDEFCSHLDRQTAKRVARNLQKLARrAGITLVVATH 195
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
4-222 |
9.96e-15 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 77.28 E-value: 9.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPdkgdyfINGQnaAHLSPDElart 83
Cdd:TIGR03719 4 IYTMNRVSKVVPPK---KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKD------FNGE--ARPQPGI---- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 rreHIGFIFQRYHLIPDLSALGNVE------------IPAIYANSERGSRRMyaTALLGRLG-----LKGREHH------ 140
Cdd:TIGR03719 69 ---KVGYLPQEPQLDPTKTVRENVEegvaeikdaldrFNEISAKYAEPDADF--DKLAAEQAelqeiIDAADAWdldsql 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 141 --------------KPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSglevlaiLSELNRHGH----TVVMVTH 202
Cdd:TIGR03719 144 eiamdalrcppwdaDVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES-------VAWLERHLQeypgTVVAVTH 216
|
250 260
....*....|....*....|....*
gi 979479175 203 DmtvaRH-----AKRIIELRDGEII 222
Cdd:TIGR03719 217 D----RYfldnvAGWILELDRGRGI 237
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
19-216 |
1.09e-14 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 72.19 E-value: 1.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 19 QARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMgcldvpdkgdyfingqnaAHLSP---DELARTRREHIGFIFQRY 95
Cdd:cd03223 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRAL------------------AGLWPwgsGRIGMPEGEDLLFLPQRP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 96 HLIPdlsalGNVEIPAIYANSErgsrrmyatallgrlglkgrehhkpsELSGGQQQRVSIARALINGGEIILADEPTGAL 175
Cdd:cd03223 74 YLPL-----GTLREQLIYPWDD--------------------------VLSGGEQQRLAFARLLLHKPKFVFLDEATSAL 122
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 979479175 176 DSQSGLEVLAILSElnrHGHTVVMVTHDMTVARHAKRIIEL 216
Cdd:cd03223 123 DEESEDRLYQLLKE---LGITVISVGHRPSLWKFHDRVLDL 160
|
|
| YbbP |
COG3127 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease ... |
249-646 |
1.22e-14 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442361 [Multi-domain] Cd Length: 830 Bit Score: 77.53 E-value: 1.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 249 LFDRTRESLQMALKAMNAHRLRTTLTMIGIIFGIAAVVTVVALGEGAKQktleeikSLGTNVVRIYPGRDFFD---DSVE 325
Cdd:COG3127 445 LPRRLGPALRLALANLHRPPARTAAQVLALGLGLMLLLLLALVRGDLLA-------SWQAQLPEDAPNYFLINiqpDQVD 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 326 SIRTLIpaDADALAKQGFVDSVSPEVsTSDNIRFLGKSAMASING---VGREhFRV-------KGIELLQGTTFRDDRNA 395
Cdd:COG3127 518 AFRAFL--AAQGVAALELYPMVRGRL-VAINGQPVAELAYDDDRArwvLRRE-FNLtwsatlpEGNRLVAGEWWPALDAG 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 396 LQEVIIDENTRKaifdDAGLQaLGQII---LLG-SVPARVVGIaRSSDYSDMpnRITVWMPYSTVMYRmvGKPVLSSISV 471
Cdd:COG3127 594 EPLVSVEEGLAE----RLGLK-LGDTLtfnVAGrEVTATVTSL-RKVDWDSM--RPNFFVVFSPGALE--GAPATYITSF 663
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 472 RLKDnvnnEAAISAISQLltrrhgVKDF---QVYNFEQIKKSVERTSMTFSILILMVASISLMIGSIGVMNIMLVSVTER 548
Cdd:COG3127 664 YLPP----AAEAALLRAL------VRAFpnvTVIDVDAILDQVRDILDQVSLAVEFLAGFALLAGLLVLAAALAASRDER 733
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 549 THEIGVRMAVGARYGDIMQQFIIEAVLVCLIGGALGIALSYATGMLF-TALGDEMFTViySWQAAVTAFFCSTLIGMIFG 627
Cdd:COG3127 734 TREAALLRTLGASRRQLRRALALEFALLGLLAGLLAALLAELAGWALaRFVFDLPFSP--PWWLWLAGLLGGALLVLLAG 811
|
410
....*....|....*....
gi 979479175 628 YLPARKAARMDPIISLASE 646
Cdd:COG3127 812 LLGARRVLRQPPLEVLREE 830
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
19-204 |
3.25e-14 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 72.62 E-value: 3.25e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 19 QARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARtrrEHIGFIFQRYHLI 98
Cdd:PRK10895 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR---RGIGYLPQEASIF 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 99 PDLSALGNV-EIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDS 177
Cdd:PRK10895 91 RRLSVYDNLmAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDP 170
|
170 180
....*....|....*....|....*..
gi 979479175 178 QSGLEVLAILSELNRHGHTVVMVTHDM 204
Cdd:PRK10895 171 ISVIDIKRIIEHLRDSGLGVLITDHNV 197
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
5-223 |
3.58e-14 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 71.67 E-value: 3.58e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGngSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:cd03369 7 IEVENLSVRYA--PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL---- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIpDLSALGNVEIPAIYANSErgsrrmyataLLGRLGLKGrehhKPSELSGGQQQRVSIARALINGGE 164
Cdd:cd03369 81 RSSLTIIPQDPTLF-SGTIRSNLDPFDEYSDEE----------IYGALRVSE----GGLNLSQGQRQLLCLARALLKRPR 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 165 IILADEPTGALDSQSGLEVLAILSELNRhGHTVVMVTHDM-TVARHAKrIIELRDGEIIS 223
Cdd:cd03369 146 VLVLDEATASIDYATDALIQKTIREEFT-NSTILTIAHRLrTIIDYDK-ILVMDAGEVKE 203
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
21-221 |
6.36e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 75.54 E-value: 6.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIM-GCLDVPDKGDYFINGqNAAHLSpdelartrreHIGFIFqryhlip 99
Cdd:PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMlGELPPRSDASVVIRG-TVAYVP----------QVSWIF------- 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 100 DLSALGNVEIPAIYaNSERGSRRMYATALLGRLG-LKGREHHKPSE----LSGGQQQRVSIARALINGGEIILADEPTGA 174
Cdd:PLN03130 692 NATVRDNILFGSPF-DPERYERAIDVTALQHDLDlLPGGDLTEIGErgvnISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 979479175 175 LDSQSGLEVL--AILSELNrhGHTVVMVTHDMTVARHAKRIIELRDGEI 221
Cdd:PLN03130 771 LDAHVGRQVFdkCIKDELR--GKTRVLVTNQLHFLSQVDRIILVHEGMI 817
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
1-233 |
6.59e-14 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 74.92 E-value: 6.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKIIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDVPD-KGDYFINGQnaahlspd 78
Cdd:PLN03211 61 IKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNaLAGRIQGNNfTGTILANNR-------- 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 79 ELARTRREHIGFIFQRYHLIPDLS---ALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSE-----LSGGQQ 150
Cdd:PLN03211 133 KPTKQILKRTGFVTQDDILYPHLTvreTLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNsfirgISGGER 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 151 QRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHdmtvaRHAKRIIELRDGEIISDSGSCVS 230
Cdd:PLN03211 213 KRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH-----QPSSRVYQMFDSVLVLSEGRCLF 287
|
...
gi 979479175 231 VTK 233
Cdd:PLN03211 288 FGK 290
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1-222 |
6.63e-14 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 74.77 E-value: 6.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 1 MRKII-ELKGISRTYGNGsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPdkgdyfINGQnaAHLSPDe 79
Cdd:PRK11819 2 MAQYIyTMNRVSKVVPPK---KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE------FEGE--ARPAPG- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 80 lARtrrehIGFIFQRYHLIPDLSALGNV---------------EIPAIYANSERgsrrmYATALLGRLG-LKGR-EHH-- 140
Cdd:PRK11819 70 -IK-----VGYLPQEPQLDPEKTVRENVeegvaevkaaldrfnEIYAAYAEPDA-----DFDALAAEQGeLQEIiDAAda 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 141 ---------------------KPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSglevlaiLSELNRHGH---- 195
Cdd:PRK11819 139 wdldsqleiamdalrcppwdaKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES-------VAWLEQFLHdypg 211
|
250 260 270
....*....|....*....|....*....|..
gi 979479175 196 TVVMVTHDmtvaRH-----AKRIIELRDGEII 222
Cdd:PRK11819 212 TVVAVTHD----RYfldnvAGWILELDRGRGI 239
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
19-222 |
7.06e-14 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 74.75 E-value: 7.06e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 19 QARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDVpDKGDYFINGQNAAHLSPDELartrREHIGFIFQRYHL 97
Cdd:PRK10789 326 TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSlIQRHFDV-SEGDIRFHDIPLTKLQLDSW----RSRLAVVSQTPFL 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 98 IPDLS----ALGN-------VEIPAIYANSERGSRRM---YATallgRLGLKGrehhkpSELSGGQQQRVSIARALINGG 163
Cdd:PRK10789 401 FSDTVanniALGRpdatqqeIEHVARLASVHDDILRLpqgYDT----EVGERG------VMLSGGQKQRISIARALLLNA 470
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 164 EIILADEPTGALDSQSGLEVLAILSELnRHGHTVVMVTHDMTVARHAKRIIELRDGEII 222
Cdd:PRK10789 471 EILILDDALSAVDGRTEHQILHNLRQW-GEGRTVIISAHRLSALTEASEILVMQHGHIA 528
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
24-223 |
8.80e-14 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 74.60 E-value: 8.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGClDVP-DKGdYFINGQN--AAHLSPDElarTRRE-------------H 87
Cdd:PRK11147 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKILNG-EVLlDDG-RIIYEQDliVARLQQDP---PRNVegtvydfvaegieE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 88 IGFIFQRYHLIPD----------LSALGNVEIPAIYANSERGSRRMYATalLGRLGLKGreHHKPSELSGGQQQRVSIAR 157
Cdd:PRK11147 94 QAEYLKRYHDISHlvetdpseknLNELAKLQEQLDHHNLWQLENRINEV--LAQLGLDP--DAALSSLSGGWLRKAALGR 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 158 ALINGGEIILADEPTGALDsqsgLEVLAILSE-LNRHGHTVVMVTHDMT-VARHAKRIIELRDGEIIS 223
Cdd:PRK11147 170 ALVSNPDVLLLDEPTNHLD----IETIEWLEGfLKTFQGSIIFISHDRSfIRNMATRIVDLDRGKLVS 233
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
4-223 |
9.61e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 72.14 E-value: 9.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYgngSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHlspdELART 83
Cdd:PRK13652 3 LIETRDLCYSY---SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK----ENIRE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREHIGFIFQRyhliPDLSALG-NVEIPAIYANSERG----SRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARA 158
Cdd:PRK13652 76 VRKFVGLVFQN----PDDQIFSpTVEQDIAFGPINLGldeeTVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGV 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 159 LINGGEIILADEPTGALDSQSGLEVLAILSEL-NRHGHTVVMVTHDMT-VARHAKRIIELRDGEIIS 223
Cdd:PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLpETYGMTVIFSTHQLDlVPEMADYIYVMDKGRIVA 218
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
4-202 |
1.38e-13 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 69.58 E-value: 1.38e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNI------MGCLdvpdKGDYFINGQnaahLSP 77
Cdd:cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVlagrktAGVI----TGEILINGR----PLD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 78 DELARTrrehIGFIFQRYHLIPDLSALGNVEIPAIyansergsrrmyatallgrlgLKGrehhkpseLSGGQQQRVSIAR 157
Cdd:cd03232 75 KNFQRS----TGYVEQQDVHSPNLTVREALRFSAL---------------------LRG--------LSVEQRKRLTIGV 121
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 979479175 158 ALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTH 202
Cdd:cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
|
|
| FtsX |
pfam02687 |
FtsX-like permease family; This is a family of predicted permeases and hypothetical ... |
523-639 |
1.86e-13 |
|
FtsX-like permease family; This is a family of predicted permeases and hypothetical transmembrane proteins. Swiss:P57382 has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both Swiss:P57382 and Swiss:O54500 have been shown to require ATP. This region contains three transmembrane helices.
Pssm-ID: 460652 [Multi-domain] Cd Length: 120 Bit Score: 67.28 E-value: 1.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 523 LMVASISLMIGSIGVMNIMLVSVTERTHEIGVRMAVGARYGDIMQQFIIEAVLVCLIGGALGIALSYATGMLFTALGDEM 602
Cdd:pfam02687 1 ILFSLLILLLAVLIILLLLSISISERRREIGILRALGASRKQIFKLLLLEALLIGLIGLVIGLLLGLLLAKLIAILLYSS 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 979479175 603 ---FTVIYSWQAAVTAFFCSTLIGMIFGYLPARKAARMDP 639
Cdd:pfam02687 81 gisLPILVPPLSILIALLLALLIALLASLLPALRIRKINP 120
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
5-247 |
2.35e-13 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 73.21 E-value: 2.35e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:PRK10790 341 IDIDNVSFAYRDD---NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL---- 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIPDlSALGNV----EIpaiyanSERGSRRMYATALLGRL------GLKGREHHKPSELSGGQQQRVS 154
Cdd:PRK10790 414 RQGVAMVQQDPVVLAD-TFLANVtlgrDI------SEEQVWQALETVQLAELarslpdGLYTPLGEQGNNLSVGQKQLLA 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 155 IARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGhTVVMVTHDMTVARHAKRIIELRDGEIISDSgscvsvtkT 234
Cdd:PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHT-TLVVIAHRLSTIVEADTILVLHRGQAVEQG--------T 557
|
250
....*....|...
gi 979479175 235 WRQTNSIRQSYWQ 247
Cdd:PRK10790 558 HQQLLAAQGRYWQ 570
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
24-234 |
3.09e-13 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 73.47 E-value: 3.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMNIM-GCLDVPDKGDYFINGQNA-AHLSPDELARTRREHIGFifqryhlipdl 101
Cdd:PLN03232 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMlGELSHAETSSVVIRGSVAyVPQVSWIFNATVRENILF----------- 701
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 102 salgnveipAIYANSERGSRRMYATALLGRLGL-KGREHHKPSE----LSGGQQQRVSIARALINGGEIILADEPTGALD 176
Cdd:PLN03232 702 ---------GSDFESERYWRAIDVTALQHDLDLlPGRDLTEIGErgvnISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 177 SQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIELRDGeIISDSGSCVSVTKT 234
Cdd:PLN03232 773 AHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEG-MIKEEGTFAELSKS 829
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
23-202 |
3.25e-13 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 69.11 E-value: 3.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 23 VLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSpdelaRTRreHIGFIFQRYHLIPDLS 102
Cdd:PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD-----RSR--FMAYLGHLPGLKADLS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 103 ALGNVEipaiYANSERGSR--RMYATALlGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSG 180
Cdd:PRK13543 99 TLENLH----FLCGLHGRRakQMPGSAL-AIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGI 173
|
170 180
....*....|....*....|..
gi 979479175 181 LEVLAILSELNRHGHTVVMVTH 202
Cdd:PRK13543 174 TLVNRMISAHLRGGGAALVTTH 195
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
4-201 |
3.51e-13 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 68.83 E-value: 3.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNImGCLDVPDK----GDYFINGqnaahLSPDE 79
Cdd:cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKA-LANRTEGNvsveGDIHYNG-----IPYKE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 80 LARTRREHIGFIFQRYHLIPDLSALGNVEipaiyansergsrrmYATALLGRLGLKGrehhkpseLSGGQQQRVSIARAL 159
Cdd:cd03233 77 FAEKYPGEIIYVSEEDVHFPTLTVRETLD---------------FALRCKGNEFVRG--------ISGGERKRVSIAEAL 133
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 979479175 160 INGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVT 201
Cdd:cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
20-207 |
6.08e-13 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 72.35 E-value: 6.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 20 ARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAaHLSPDELartrREHIGFIFQRYHLIP 99
Cdd:TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAV----RQSLGMCPQHNILFH 1016
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 100 DLSALGNVEIPAIYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQS 179
Cdd:TIGR01257 1017 HLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS 1096
|
170 180
....*....|....*....|....*...
gi 979479175 180 GLEVLAILSELnRHGHTVVMVTHDMTVA 207
Cdd:TIGR01257 1097 RRSIWDLLLKY-RSGRTIIMSTHHMDEA 1123
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
19-202 |
1.69e-12 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 66.90 E-value: 1.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 19 QARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAahlspDELARTRREHIGFIFQRYHLI 98
Cdd:PRK13540 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI-----KKDLCTYQKQLCFVGHRSGIN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 99 PDLSALGNVeipaiYANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQ 178
Cdd:PRK13540 87 PYLTLRENC-----LYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDEL 161
|
170 180
....*....|....*....|....
gi 979479175 179 SGLEVLAILSELNRHGHTVVMVTH 202
Cdd:PRK13540 162 SLLTIITKIQEHRAKGGAVLLTSH 185
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
24-216 |
2.74e-12 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 65.42 E-value: 2.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMNimgcldvpdkgdyfiNGQNAAHLSPDELARTRREHIGFIFqryhlIPDLSA 103
Cdd:cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN---------------EGLYASGKARLISFLPKFSRNKLIF-----IDQLQF 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 104 LGNVEIPaiyansergsrrmYATalLGRlglkgrehhKPSELSGGQQQRVSIARALING--GEIILADEPTGALDSQSGL 181
Cdd:cd03238 71 LIDVGLG-------------YLT--LGQ---------KLSTLSGGELQRVKLASELFSEppGTLFILDEPSTGLHQQDIN 126
|
170 180 190
....*....|....*....|....*....|....*
gi 979479175 182 EVLAILSELNRHGHTVVMVTHDMTVARHAKRIIEL 216
Cdd:cd03238 127 QLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDF 161
|
|
| ABC_UvrA_II |
cd03271 |
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair ... |
24-222 |
3.08e-12 |
|
ATP-binding cassette domain II of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213238 [Multi-domain] Cd Length: 261 Bit Score: 67.25 E-value: 3.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMN----------IMGCLDVPDKGDyFINGQNA----AHLSPDELARTRR---- 85
Cdd:cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINdtlypalarrLHLKKEQPGNHD-RIEGLEHidkvIVIDQSPIGRTPRsnpa 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 86 ------EHIGFIF------QRYH-----------LIPDLSALGNVEIPAIYANSERGSRRMYATALLG----RLGlkgre 138
Cdd:cd03271 90 tytgvfDEIRELFcevckgKRYNretlevrykgkSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGlgyiKLG----- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 139 hhKPS-ELSGGQQQRVSIARALIN---GGEIILADEPTGAL---DSQSGLEVLAILSELnrhGHTVVMVTHDMTVARHAK 211
Cdd:cd03271 165 --QPAtTLSGGEAQRIKLAKELSKrstGKTLYILDEPTTGLhfhDVKKLLEVLQRLVDK---GNTVVVIEHNLDVIKCAD 239
|
250
....*....|....*..
gi 979479175 212 RIIEL------RDGEII 222
Cdd:cd03271 240 WIIDLgpeggdGGGQVV 256
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
34-206 |
3.61e-12 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 67.01 E-value: 3.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 34 GEMVAIIGASGSGKSTLMNIM--------GCLDVPDKGDYFINGQNAAHLSpDELARTRREHIGFIF--QRYHLIPDlSA 103
Cdd:cd03236 26 GQVLGLVGPNGIGKSTALKILagklkpnlGKFDDPPDWDEILDEFRGSELQ-NYFTKLLEGDVKVIVkpQYVDLIPK-AV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 104 LGNVEipaiyANSERGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEV 183
Cdd:cd03236 104 KGKVG-----ELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNA 178
|
170 180
....*....|....*....|...
gi 979479175 184 LAILSELNRHGHTVVMVTHDMTV 206
Cdd:cd03236 179 ARLIRELAEDDNYVLVVEHDLAV 201
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
21-221 |
4.91e-12 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 69.42 E-value: 4.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLM-NIMGCLDVPDkgdyfinGQNAAHLSpdelartrrehIGFIFQRyHLIP 99
Cdd:PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLqSLLSQFEISE-------GRVWAERS-----------IAYVPQQ-AWIM 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 100 DLSALGNV-----EIPAIYANSERGSRRMYATALLGRlGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGA 174
Cdd:PTZ00243 734 NATVRGNIlffdeEDAARLADAVRVSQLEADLAQLGG-GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSA 812
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 979479175 175 LDSQSGLEVL--AILSELnrHGHTVVMVTHDMTVARHAKRIIELRDGEI 221
Cdd:PTZ00243 813 LDAHVGERVVeeCFLGAL--AGKTRVLATHQVHVVPRADYVVALGDGRV 859
|
|
| ABC_UvrA_I |
cd03270 |
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair ... |
24-216 |
5.99e-12 |
|
ATP-binding cassette domain I of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213237 [Multi-domain] Cd Length: 226 Bit Score: 65.74 E-value: 5.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLmnimgCLDVpdkgdYFINGQNAAHLSPDELARTRREHIGfifqryhlIPDLSA 103
Cdd:cd03270 11 LKNVDVDIPRNKLVVITGVSGSGKSSL-----AFDT-----IYAEGQRRYVESLSAYARQFLGQMD--------KPDVDS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 104 LGNVEiPAIYANSERGSRRMYATA------------LLGRLGLKGR---------EHHKPSE----LSGGQQQRVSIARA 158
Cdd:cd03270 73 IEGLS-PAIAIDQKTTSRNPRSTVgtvteiydylrlLFARVGIRERlgflvdvglGYLTLSRsaptLSGGEAQRIRLATQ 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 159 LING--GEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIEL 216
Cdd:cd03270 152 IGSGltGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDI 211
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
24-227 |
1.37e-11 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 68.05 E-value: 1.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMNIMgcLDVPDK--GDYFINGQNA-----AHLSPDELartrREHIGF------ 90
Cdd:TIGR00957 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSAL--LAEMDKveGHVHMKGSVAyvpqqAWIQNDSL----RENILFgkalne 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 91 -----IFQRYHLIPDLSALgnveiPAiyanserGSRRmyatallgRLGLKGrehhkpSELSGGQQQRVSIARALINGGEI 165
Cdd:TIGR00957 728 kyyqqVLEACALLPDLEIL-----PS-------GDRT--------EIGEKG------VNLSGGQKQRVSLARAVYSNADI 781
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 166 ILADEPTGALDSQSGLEVL--AILSELNRHGHTVVMVTHDMTVARHAKRIIELRDGEiISDSGS 227
Cdd:TIGR00957 782 YLFDDPLSAVDAHVGKHIFehVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGK-ISEMGS 844
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
2-227 |
1.53e-11 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 67.22 E-value: 1.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 2 RKIIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDvPDKGdyfingqnaahlspdEL 80
Cdd:PRK15064 317 RNALEVENLTKGFDN----GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRtLVGELE-PDSG---------------TV 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 81 ARTRREHIGFIFQ--RYHLIPDLSALgnvEIPAIYANSERGSRRMYATalLGRLGLKGREHHKPSE-LSGGQQQRVSIAR 157
Cdd:PRK15064 377 KWSENANIGYYAQdhAYDFENDLTLF---DWMSQWRQEGDDEQAVRGT--LGRLLFSQDDIKKSVKvLSGGEKGRMLFGK 451
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 158 ALINGGEIILADEPTGALDSQSgLEVLAIlsELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEIISDSGS 227
Cdd:PRK15064 452 LMMQKPNVLVMDEPTNHMDMES-IESLNM--ALEKYEGTLIFVSHDREfVSSLATRIIEITPDGVVDFSGT 519
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
3-220 |
1.77e-11 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 67.75 E-value: 1.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 3 KIIELKGIsRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGqnaAHLSPDELAR 82
Cdd:PTZ00265 381 KKIQFKNV-RFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIND---SHNLKDINLK 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 TRREHIGFIFQ-------------RYHL--IPDLSALG---NVEIPAIYANSE-RGSRRMYATALLGRLG--------LK 135
Cdd:PTZ00265 457 WWRSKIGVVSQdpllfsnsiknniKYSLysLKDLEALSnyyNEDGNDSQENKNkRNSCRAKCAGDLNDMSnttdsnelIE 536
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 136 GREHHK----------------------------------PSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGL 181
Cdd:PTZ00265 537 MRKNYQtikdsevvdvskkvlihdfvsalpdkyetlvgsnASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEY 616
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 979479175 182 EVLAILSELNRHGHTV-VMVTHDMTVARHAKRIIELRDGE 220
Cdd:PTZ00265 617 LVQKTINNLKGNENRItIIIAHRLSTIRYANTIFVLSNRE 656
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-227 |
6.22e-11 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 65.26 E-value: 6.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 2 RKIIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKS-TLMNIMGCLDVP----DKGDYFINGQNA---- 72
Cdd:PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSvTALALMRLLEQAgglvQCDKMLLRRRSRqvie 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 73 -AHLSPDELARTRREHIGFIFQRyhlipDLSALGNV-EIPAIYANSER------------GSRRMY-------ATALLGR 131
Cdd:PRK10261 90 lSEQSAAQMRHVRGADMAMIFQE-----PMTSLNPVfTVGEQIAESIRlhqgasreeamvEAKRMLdqvripeAQTILSR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 132 LglkgrehhkPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRH-GHTVVMVTHDM-TVARH 209
Cdd:PRK10261 165 Y---------PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEmSMGVIFITHDMgVVAEI 235
|
250
....*....|....*...
gi 979479175 210 AKRIIELRDGEIIsDSGS 227
Cdd:PRK10261 236 ADRVLVMYQGEAV-ETGS 252
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
34-206 |
6.96e-11 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 65.19 E-value: 6.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 34 GEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYfingqnAAHLSPDE-LARTRrehiGFIFQRYhlipdLSALGNVEIPAI 112
Cdd:COG1245 99 GKVTGILGPNGIGKSTALKILSGELKPNLGDY------DEEPSWDEvLKRFR----GTELQDY-----FKKLANGEIKVA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 113 Y---------------------ANSERGSRRMYAtallGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEP 171
Cdd:COG1245 164 HkpqyvdlipkvfkgtvrelleKVDERGKLDELA----EKLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEP 239
|
170 180 190
....*....|....*....|....*....|....*
gi 979479175 172 TGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTV 206
Cdd:COG1245 240 SSYLDIYQRLNVARLIRELAEEGKYVLVVEHDLAI 274
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
23-219 |
1.52e-10 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 64.55 E-value: 1.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 23 VLKNVDLTIAAGEMVAIIGASGSGKST-LMNIMGCLdVPDKGDyfINGQNAAHLSPDE---LARTRREHI--GFIFQRYH 96
Cdd:TIGR01271 441 VLKNISFKLEKGQLLAVAGSTGSGKSSlLMMIMGEL-EPSEGK--IKHSGRISFSPQTswiMPGTIKDNIifGLSYDEYR 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 97 LIPDLSALGNVEIPAIYANSERgsrrmyatALLGRLGLKgrehhkpseLSGGQQQRVSIARALINGGEIILADEPTGALD 176
Cdd:TIGR01271 518 YTSVIKACQLEEDIALFPEKDK--------TVLGEGGIT---------LSGGQRARISLARAVYKDADLYLLDSPFTHLD 580
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 979479175 177 SQSGLEVL-AILSELnRHGHTVVMVTHDMTVARHAKRIIELRDG 219
Cdd:TIGR01271 581 VVTEKEIFeSCLCKL-MSNKTRILVTSKLEHLKKADKILLLHEG 623
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
23-221 |
2.89e-10 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 63.81 E-value: 2.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 23 VLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELartrREHIGFIFQRYHLIP--- 99
Cdd:TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL----RFKITIIPQDPVLFSgsl 1376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 100 --DLSALGNVEIPAIYANSERGSRRMYATALLGRLglkgreHHKPSE----LSGGQQQRVSIARALINGGEIILADEPTG 173
Cdd:TIGR00957 1377 rmNLDPFSQYSDEEVWWALELAHLKTFVSALPDKL------DHECAEggenLSVGQRQLVCLARALLRKTKILVLDEATA 1450
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 979479175 174 ALDsqsgLEVLAILSELNRHGH---TVVMVTHDMTVARHAKRIIELRDGEI 221
Cdd:TIGR00957 1451 AVD----LETDNLIQSTIRTQFedcTVLTIAHRLNTIMDYTRVIVLDKGEV 1497
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
4-221 |
3.86e-10 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 62.49 E-value: 3.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRtygngsQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDE---- 79
Cdd:PRK09700 265 VFEVRNVTS------RDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDavkk 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 80 ----LARTRREHiGFIfqryhliPDLSALGNVEI-PAIYANSERGS--------RRMYATALLGRLGLKGRE-HHKPSEL 145
Cdd:PRK09700 339 gmayITESRRDN-GFF-------PNFSIAQNMAIsRSLKDGGYKGAmglfhevdEQRTAENQRELLALKCHSvNQNITEL 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 146 SGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHD----MTVarhAKRIIELRDGEI 221
Cdd:PRK09700 411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSElpeiITV---CDRIAVFCEGRL 487
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
34-206 |
4.00e-10 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 62.90 E-value: 4.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 34 GEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGqnaahlSPDELARTRRehiGFIFQRYhlipdLSALGNVEIPAIY 113
Cdd:PRK13409 99 GKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEP------SWDEVLKRFR---GTELQNY-----FKKLYNGEIKVVH 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 114 ---------------------ANSERGSRRmyatALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPT 172
Cdd:PRK13409 165 kpqyvdlipkvfkgkvrellkKVDERGKLD----EVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPT 240
|
170 180 190
....*....|....*....|....*....|....
gi 979479175 173 GALDSQSGLEVLAILSELNRhGHTVVMVTHDMTV 206
Cdd:PRK13409 241 SYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAV 273
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
5-202 |
4.25e-10 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 62.34 E-value: 4.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMgcldvpdKGDYFINGQNAAHLspdeLARTR 84
Cdd:PRK10938 261 IVLNNGVVSYND----RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLI-------TGDHPQGYSNDLTL----FGRRR 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 ---------REHIGFIFQRYHLIPDLSA-LGNVEIPA------IY-ANSERgsRRMYATALLGRLGLKGREHHKP-SELS 146
Cdd:PRK10938 326 gsgetiwdiKKHIGYVSSSLHLDYRVSTsVRNVILSGffdsigIYqAVSDR--QQKLAQQWLDILGIDKRTADAPfHSLS 403
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 147 GGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHT-VVMVTH 202
Cdd:PRK10938 404 WGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETqLLFVSH 460
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
27-221 |
5.55e-10 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 62.24 E-value: 5.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 27 VDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDELARTrrehiGFIfqryhLIP-DLSALG 105
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRA-----GIM-----LCPeDRKAEG 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 106 NVEIPAIYANSERGSRRMYATA---------------LLGRLGLKGREHHKP-SELSGGQQQRVSIARALINGGEIILAD 169
Cdd:PRK11288 342 IIPVHSVADNINISARRHHLRAgclinnrweaenadrFIRSLNIKTPSREQLiMNLSGGNQQKAILGRWLSEDMKVILLD 421
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 979479175 170 EPTGALDSQSGLEVLAILSELNRHGHTVVMVTHD-MTVARHAKRIIELRDGEI 221
Cdd:PRK11288 422 EPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDlPEVLGVADRIVVMREGRI 474
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
23-220 |
8.65e-10 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 60.26 E-value: 8.65e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 23 VLKNVDLTIAAGEMVAIIGASGSGKST-LMNIMGCLdVPDKGDyfINGQNAAHLSPDE---LARTRREHI--GFIFQRYH 96
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSlLMLILGEL-EPSEGK--IKHSGRISFSSQFswiMPGTIKENIifGVSYDEYR 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 97 LIPDLSALGNVEIPAIYANSERgsrrmyatALLGRLGLKgrehhkpseLSGGQQQRVSIARALINGGEIILADEPTGALD 176
Cdd:cd03291 129 YKSVVKACQLEEDITKFPEKDN--------TVLGEGGIT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 979479175 177 SQSGLEVL-AILSELNRHgHTVVMVTHDMTVARHAKRIIELRDGE 220
Cdd:cd03291 192 VFTEKEIFeSCVCKLMAN-KTRILVTSKMEHLKKADKILILHEGS 235
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
23-214 |
2.08e-09 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 60.95 E-value: 2.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 23 VLKNVDLTIAAGEMVAIIGASGSGKST-LMNIMGCLDVPDkGDYFINGQNAAHLSPDELARtrrehigfifqRYHLIP-- 99
Cdd:PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTlLLTFMRMVEVCG-GEIRVNGREIGAYGLRELRR-----------QFSMIPqd 1392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 100 ----DLSALGNVEiPAIYANSERGSRRMYATALLGRL-----GLKGREHHKPSELSGGQQQRVSIARALINGGE-IILAD 169
Cdd:PTZ00243 1393 pvlfDGTVRQNVD-PFLEASSAEVWAALELVGLRERVaseseGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSgFILMD 1471
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 979479175 170 EPTG----ALDSQSGLEVLAILSelnrhGHTVVMVTHDM-TVARHAKRII 214
Cdd:PTZ00243 1472 EATAnidpALDRQIQATVMSAFS-----AYTVITIAHRLhTVAQYDKIIV 1516
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
21-201 |
2.21e-09 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 60.89 E-value: 2.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGC----LDVPDKGDYFINGqnaahLSPDELARTRREHIGFIFQRYH 96
Cdd:TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASntdgFHIGVEGVITYDG-----ITPEEIKKHYRGDVVYNAETDV 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 97 LIPDLSALGNVEIPAI-------YANSERGSRRMYATALLGR-LGLkgrEHHKPSE--------LSGGQQQRVSIARALI 160
Cdd:TIGR00956 149 HFPHLTVGETLDFAARcktpqnrPDGVSREEYAKHIADVYMAtYGL---SHTRNTKvgndfvrgVSGGERKRVSIAEASL 225
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 979479175 161 NGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVT 201
Cdd:TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVA 266
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
2-202 |
2.34e-09 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 60.89 E-value: 2.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 2 RKIIELKGISRTYGNGSQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNimgCLD------VPDKGDYFING------ 69
Cdd:TIGR00956 757 EDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLN---VLAervttgVITGGDRLVNGrpldss 833
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 70 ---------QNAAHLSpdelARTRREHIGFifqryhlipdlSALgnVEIPAIYANSERGS----------RRMYATALLG 130
Cdd:TIGR00956 834 fqrsigyvqQQDLHLP----TSTVRESLRF-----------SAY--LRQPKSVSKSEKMEyveeviklleMESYADAVVG 896
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 979479175 131 RLGlkgrehhkpSELSGGQQQRVSIARALI-NGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTH 202
Cdd:TIGR00956 897 VPG---------EGLNVEQRKRLTIGVELVaKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIH 960
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
5-204 |
3.60e-09 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 60.14 E-value: 3.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIM-GCLDvPDKGDYFINGQnaaHLSPDELArT 83
Cdd:NF033858 267 IEARGLTMRFGD----FTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLtGLLP-ASEGEAWLFGQ---PVDAGDIA-T 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RReHIGFIFQRYHLIPDLSALGNVE-------IPAiyansERGSRRMyaTALLGRLGLKGREHHKPSELSGGQQQRVSIA 156
Cdd:NF033858 338 RR-RVGYMSQAFSLYGELTVRQNLElharlfhLPA-----AEIAARV--AEMLERFDLADVADALPDSLPLGIRQRLSLA 409
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 157 RALINGGEIILADEPTgaldsqSGLEVLA------ILSELNRH-GHTVVMVTHDM 204
Cdd:NF033858 410 VAVIHKPELLILDEPT------SGVDPVArdmfwrLLIELSREdGVTIFISTHFM 458
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
3-222 |
6.17e-09 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 57.34 E-value: 6.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 3 KIIELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGclDVPD----KGDYFINGQNAAHLSPD 78
Cdd:CHL00131 6 PILEIKNLHASVNE----NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIA--GHPAykilEGDILFKGESILDLEPE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 79 ElartrREHIG-FI-FQRYHLIPDLSalgNVEIPAIYANSERGSRRM-------YATALLGRLGLKGREHHKPSE----- 144
Cdd:CHL00131 80 E-----RAHLGiFLaFQYPIEIPGVS---NADFLRLAYNSKRKFQGLpeldpleFLEIINEKLKLVGMDPSFLSRnvneg 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 145 LSGGQQQRVSIARALINGGEIILADEPTGALDsqsgLEVLAILSE----LNRHGHTVVMVThdmtvarHAKRIIE----- 215
Cdd:CHL00131 152 FSGGEKKRNEILQMALLDSELAILDETDSGLD----IDALKIIAEginkLMTSENSIILIT-------HYQRLLDyikpd 220
|
250
....*....|.
gi 979479175 216 ----LRDGEII 222
Cdd:CHL00131 221 yvhvMQNGKII 231
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
30-220 |
7.37e-09 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 57.03 E-value: 7.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 30 TIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAH----LSPDELARTRRehigFIFQRyhlIPDLsalg 105
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYkpqyIKADYEGTVRD----LLSSI---TKDF---- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 106 nveipaiyanserGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLA 185
Cdd:cd03237 90 -------------YTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156
|
170 180 190
....*....|....*....|....*....|....*..
gi 979479175 186 ILSELNRHGH-TVVMVTHDMTVARH-AKRIIeLRDGE 220
Cdd:cd03237 157 VIRRFAENNEkTAFVVEHDIIMIDYlADRLI-VFEGE 192
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
26-224 |
9.38e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 58.30 E-value: 9.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 26 NVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDVPDKGDYFINGQNAAHLSPDELARTRREHIGFIFQRYHLIPDLSAL 104
Cdd:TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQaLFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVG 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 105 GNVEIPAIYANSERGsrRMYATALLG-------RLGLKGREHHKP-SELSGGQQQRVSIARALINGGEIILADEPTGALD 176
Cdd:TIGR02633 358 KNITLSVLKSFCFKM--RIDAAAELQiigsaiqRLKVKTASPFLPiGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 979479175 177 SQSGLEVLAILSELNRHGHTVVMVTHDMT-VARHAKRIIELRDGEIISD 224
Cdd:TIGR02633 436 VGAKYEIYKLINQLAQEGVAIIVVSSELAeVLGLSDRVLVIGEGKLKGD 484
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
24-223 |
3.25e-08 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 56.28 E-value: 3.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDElarTRREHIGFIFQRYHLIPDLSA 103
Cdd:PRK10982 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKE---ALENGISMVHQELNLVLQRSV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 104 -----LGNVEIPAIYANSERgsrrMY--ATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALD 176
Cdd:PRK10982 91 mdnmwLGRYPTKGMFVDQDK----MYrdTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLT 166
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 979479175 177 SQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGEIIS 223
Cdd:PRK10982 167 EKEVNHLFTIIRKLKERGCGIVYISHKMeEIFQLCDEITILRDGQWIA 214
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
30-219 |
4.19e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 56.33 E-value: 4.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 30 TIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDyfINGQ-----NAAHLSPDELARTRrehigfifqryhlipdlSAL 104
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKPDEGE--VDEDlkisyKPQYISPDYDGTVE-----------------EFL 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 105 GNVeIPAIYANSergsrrMYATALLGRLGLKgREHHKP-SELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEV 183
Cdd:COG1245 423 RSA-NTDDFGSS------YYKTEIIKPLGLE-KLLDKNvKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAV 494
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 979479175 184 LAILSELNR-HGHTVVMVTHDMT-----------------VARHAKRIIELRDG 219
Cdd:COG1245 495 AKAIRRFAEnRGKTAMVVDHDIYlidyisdrlmvfegepgVHGHASGPMDMREG 548
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
40-209 |
7.69e-08 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 55.28 E-value: 7.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 40 IGASGSGKSTLMNIMGCLDVPDKGDYFI-NGQNAAHLSPDElartrrehigFIFQRYHLIpDLSALGNVEI-------PA 111
Cdd:PRK15064 33 IGANGCGKSTFMKILGGDLEPSAGNVSLdPNERLGKLRQDQ----------FAFEEFTVL-DTVIMGHTELwevkqerDR 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 112 IYANSERGSRRMYATA---------------------LLGrLGLKGREHHKP-SELSGGQQQRVSIARALINGGEIILAD 169
Cdd:PRK15064 102 IYALPEMSEEDGMKVAdlevkfaemdgytaearagelLLG-VGIPEEQHYGLmSEVAPGWKLRVLLAQALFSNPDILLLD 180
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 979479175 170 EPTGALD--SQSGLEvlailSELNRHGHTVVMVTHDmtvaRH 209
Cdd:PRK15064 181 EPTNNLDinTIRWLE-----DVLNERNSTMIIISHD----RH 213
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
11-227 |
8.26e-08 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 55.79 E-value: 8.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 11 SRTYGNGSQARTV------LKNVDLTIAAGEMVAIIGASGSGKSTLMN----------IMGCLDVPDKGDYfINGQNA-- 72
Cdd:TIGR00630 605 ERRPGNGKFLTLKgarennLKNITVSIPLGLFTCITGVSGSGKSTLINdtlypalanrLNGAKTVPGRYTS-IEGLEHld 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 73 --AHLSPDELARTRRE----HIGF---IFQRYHLIPDLSALG--------NVE-------------------IPAIYA-- 114
Cdd:TIGR00630 684 kvIHIDQSPIGRTPRSnpatYTGVfdeIRELFAETPEAKVRGytpgrfsfNVKggrceacqgdgvikiemhfLPDVYVpc 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 115 --------NSE------RG------------------------SRRMYATALLG----RLGlkgrehhKPS-ELSGGQQQ 151
Cdd:TIGR00630 764 evckgkryNREtlevkyKGkniadvldmtveeayeffeavpsiSRKLQTLCDVGlgyiRLG-------QPAtTLSGGEAQ 836
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 152 RVSIARAL---INGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIEL------RDGEII 222
Cdd:TIGR00630 837 RIKLAKELskrSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLDVIKTADYIIDLgpeggdGGGTVV 916
|
....*
gi 979479175 223 SdSGS 227
Cdd:TIGR00630 917 A-SGT 920
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
140-220 |
1.10e-07 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 52.19 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 140 HKPS--ELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGH-TVVMVTHDMTVARHAKRIIEL 216
Cdd:cd03222 65 YKPQyiDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKkTALVVEHDLAVLDYLSDRIHV 144
|
....
gi 979479175 217 RDGE 220
Cdd:cd03222 145 FEGE 148
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
21-203 |
1.12e-07 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 54.79 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMG--------------------------CLDVPDKgDYFINGQNAAH 74
Cdd:PRK10636 14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKneisadggsytfpgnwqlawvnqetpALPQPAL-EYVIDGDREYR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 75 LSPDELARTRREHIGfifqryHLIpdlsALGNVEIPAIYANSERgSRrmyATALLGRLGLKGREHHKP-SELSGGQQQRV 153
Cdd:PRK10636 93 QLEAQLHDANERNDG------HAI----ATIHGKLDAIDAWTIR-SR---AASLLHGLGFSNEQLERPvSDFSGGWRMRL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 979479175 154 SIARALINGGEIILADEPTGALDSQSgleVLAILSELNRHGHTVVMVTHD 203
Cdd:PRK10636 159 NLAQALICRSDLLLLDEPTNHLDLDA---VIWLEKWLKSYQGTLILISHD 205
|
|
| FtsX |
COG2177 |
Cell division protein FtsX [Cell cycle control, cell division, chromosome partitioning]; |
464-637 |
1.38e-07 |
|
Cell division protein FtsX [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441780 [Multi-domain] Cd Length: 292 Bit Score: 53.68 E-value: 1.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 464 PVLSSISVRLKDNvnNEAAISAISQLLTRRHGVKDFQVYN--FEQIKKSVERTSMTFSILILMVASISLMIgsigVMNIM 541
Cdd:COG2177 116 PLPASIEVKLKPE--DPEDLEALAAALEALPGVAEVDYDRewVERLFALLNLLRLVGLVLAALLLLAAVLL----IGNTI 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 542 LVSVTERTHEIGV-RMaVGARYGDIMQQFIIEAVLVCLIGGALGIALSYATGMLFTALGDEMFTVIY-------SWQAAV 613
Cdd:COG2177 190 RLAIYSRREEIEImKL-VGATDGFIRRPFLLEGALLGLLGGLLALLLLALLYLLLVSALADGLAFLSllslgglLLLLLL 268
|
170 180
....*....|....*....|....
gi 979479175 614 TAFFCSTLIGMIFGYLPARKAARM 637
Cdd:COG2177 269 LLLLLGALLGALGSRLAVRRYLRV 292
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
21-224 |
1.96e-07 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 54.16 E-value: 1.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLMN-IMGCLDVPDKGDYFINGQNAAHLSPdelARTRREHIGFIFQ---RYH 96
Cdd:PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQcLFGAYPGRWEGEIFIDGKPVKIRNP---QQAIAQGIAMVPEdrkRDG 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 97 LIPDLSALGNVEIPAI--YANSER---GSRRMYATALLGRLGLKGREHHKP-SELSGGQQQRVSIARALINGGEIILADE 170
Cdd:PRK13549 352 IVPVMGVGKNITLAALdrFTGGSRiddAAELKTILESIQRLKVKTASPELAiARLSGGNQQKAVLAKCLLLNPKILILDE 431
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 171 PTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGEIISD 224
Cdd:PRK13549 432 PTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELpEVLGLSDRVLVMHEGKLKGD 486
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
24-221 |
2.96e-07 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 53.47 E-value: 2.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMNIM-GCLDVpDKGDYFINGQNAAHLSP-DELARTrrehIGFIFQ---RYHLI 98
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLyGALPR-TSGYVTLDGHEVVTRSPqDGLANG----IVYISEdrkRDGLV 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 99 PDLSALGNVEIPAIYANSERGSR------RMYATALLGRLGLKGREHHKP-SELSGGQQQRVSIARALINGGEIILADEP 171
Cdd:PRK10762 343 LGMSVKENMSLTALRYFSRAGGSlkhadeQQAVSDFIRLFNIKTPSMEQAiGLLSGGNQQKVAIARGLMTRPKVLILDEP 422
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 979479175 172 TGALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGEI 221
Cdd:PRK10762 423 TRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMpEVLGMSDRILVMHEGRI 473
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
4-203 |
4.24e-07 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 53.33 E-value: 4.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGNGSqarTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFingqnaahlspdelaRT 83
Cdd:PLN03073 508 IISFSDASFGYPGGP---LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF---------------RS 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREHIGfIFQRYHLIP-DLSAlgnveIPAIY-ANSERGSRRMYATALLGRLGLKGREHHKPS-ELSGGQQQRVSIARALI 160
Cdd:PLN03073 570 AKVRMA-VFSQHHVDGlDLSS-----NPLLYmMRCFPGVPEQKLRAHLGSFGVTGNLALQPMyTLSGGQKSRVAFAKITF 643
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 979479175 161 NGGEIILADEPTGALDSQSgleVLAILSELNRHGHTVVMVTHD 203
Cdd:PLN03073 644 KKPHILLLDEPSNHLDLDA---VEALIQGLVLFQGGVLMVSHD 683
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
5-176 |
5.52e-07 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 51.39 E-value: 5.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGSQArtVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLdVPDKGDYFINGQNAAHLSPDELartr 84
Cdd:cd03289 3 MTVKDLTAKYTEGGNA--VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-LNTEGDIQIDGVSWNSVPLQKW---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 85 REHIGFIFQRYHLIP-----DLSALGNVEIPAIYANSErgsrrmyatallgRLGLKGREHHKPSE-----------LSGG 148
Cdd:cd03289 76 RKAFGVIPQKVFIFSgtfrkNLDPYGKWSDEEIWKVAE-------------EVGLKSVIEQFPGQldfvlvdggcvLSHG 142
|
170 180
....*....|....*....|....*...
gi 979479175 149 QQQRVSIARALINGGEIILADEPTGALD 176
Cdd:cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLD 170
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
4-204 |
6.49e-07 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 53.09 E-value: 6.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTY-GNGSQArtvLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFING-----------QN 71
Cdd:TIGR01257 1937 ILRLNELTKVYsGTSSPA---VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGksiltnisdvhQN 2013
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 72 AAHL----SPDELArTRREHIgFIFQRYHLIP--DLSALGNVEIPAIyansergSRRMYATALLGrlglkgrehhkpsEL 145
Cdd:TIGR01257 2014 MGYCpqfdAIDDLL-TGREHL-YLYARLRGVPaeEIEKVANWSIQSL-------GLSLYADRLAG-------------TY 2071
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 146 SGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM 204
Cdd:TIGR01257 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM 2130
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
145-227 |
6.90e-07 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 52.72 E-value: 6.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 145 LSGGQQQRVSIARALINGGEIILADEPTGALDSQS-GLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIEL----RDG 219
Cdd:PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSeKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFnnpdRTG 1438
|
....*...
gi 979479175 220 EIISDSGS 227
Cdd:PTZ00265 1439 SFVQAHGT 1446
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
25-221 |
1.02e-06 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 51.59 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 25 KNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNAAHLSPDElartrREHIGFIF-----QRYHLIP 99
Cdd:PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ-----RLARGLVYlpedrQSSGLYL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 100 DLSALGNVeipAIYANSERG--SRRMYATALLGR----LGLKGREHHKPSE-LSGGQQQRVSIARALINGGEIILADEPT 172
Cdd:PRK15439 355 DAPLAWNV---CALTHNRRGfwIKPARENAVLERyrraLNIKFNHAEQAARtLSGGNQQKVLIAKCLEASPQLLIVDEPT 431
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 979479175 173 GALDSQSGLEVLAILSELNRHGHTVVMVTHDM-TVARHAKRIIELRDGEI 221
Cdd:PRK15439 432 RGVDVSARNDIYQLIRSIAAQNVAVLFISSDLeEIEQMADRVLVMHQGEI 481
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
21-217 |
1.02e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 48.90 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 21 RTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGcldvpdkgdyFINGQNAAHLSPDELARTR----REHIGFIFQRyh 96
Cdd:cd03227 8 PSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIG----------LALGGAQSATRRRSGVKAGcivaAVSAELIFTR-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 97 lipdlsalgnveipaiyansergsrrmyatallgrlglkgrehhkpSELSGGQQQRVSIARAL----INGGEIILADEPT 172
Cdd:cd03227 76 ----------------------------------------------LQLSGGEKELSALALILalasLKPRPLYILDEID 109
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 979479175 173 GALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIELR 217
Cdd:cd03227 110 RGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIK 154
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
143-216 |
1.64e-06 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 51.75 E-value: 1.64e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 979479175 143 SELSGGQQQRVSIARALINGGE---IILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIEL 216
Cdd:PRK00635 808 SSLSGGEIQRLKLAYELLAPSKkptLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLEL 884
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
4-172 |
1.75e-06 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 51.28 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 4 IIELKGISRTYGngsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIM--------GCLDVPDkGDYfingQNAAHl 75
Cdd:NF033858 1 VARLEGVSHRYG----KTVALDDVSLDIPAGCMVGLIGPDGVGKSSLLSLIagarkiqqGRVEVLG-GDM----ADARH- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 76 spdelartRRE---HIGFIFQ---RyHLIPDLSALGNVEIPAIYANSERGSRRMYATALLGRLGL---KGREHHKpseLS 146
Cdd:NF033858 71 --------RRAvcpRIAYMPQglgK-NLYPTLSVFENLDFFGRLFGQDAAERRRRIDELLRATGLapfADRPAGK---LS 138
|
170 180
....*....|....*....|....*.
gi 979479175 147 GGQQQRVSIARALINGGEIILADEPT 172
Cdd:NF033858 139 GGMKQKLGLCCALIHDPDLLILDEPT 164
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
118-245 |
1.78e-06 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 50.50 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 118 RGSRRMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTV 197
Cdd:NF000106 118 RKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATV 197
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 979479175 198 VMVTHDMTVARH-AKRIIELRDGEIISDSGSCVSVTKTWRQTNSIRQSY 245
Cdd:NF000106 198 LLTTQYMEEAEQlAHELTVIDRGRVIADGKVDELKTKVGGRTLQIRPAH 246
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
3-52 |
2.06e-06 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 51.23 E-value: 2.06e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 979479175 3 KIIELKGISrtyGNGsqartvLKNVDLTIAAGEMVAIIGASGSGKSTLMN 52
Cdd:PRK00349 613 KFLKLKGAR---ENN------LKNVDVEIPLGKFTCVTGVSGSGKSTLIN 653
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
30-218 |
2.07e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 50.96 E-value: 2.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 30 TIAAGEMVAIIGASGSGKSTLMNIMgcldvpdkgdyfingqnAAHLSPDELARTRREHIGFIFQRyhLIPDLSalGNVE- 108
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLL-----------------AGVLKPDEGEVDPELKISYKPQY--IKPDYD--GTVEd 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 109 ----IPAIYANSergsrrMYATALLGRLGLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDsqsglevl 184
Cdd:PRK13409 420 llrsITDDLGSS------YYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD-------- 485
|
170 180 190
....*....|....*....|....*....|....
gi 979479175 185 ailselnrhghtvvmVTHDMTVARHAKRIIELRD 218
Cdd:PRK13409 486 ---------------VEQRLAVAKAIRRIAEERE 504
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
24-52 |
3.05e-06 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 50.41 E-value: 3.05e-06
10 20
....*....|....*....|....*....
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMN 52
Cdd:COG0178 621 LKNVDVEIPLGVLTCVTGVSGSGKSTLVN 649
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
145-204 |
4.00e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 49.73 E-value: 4.00e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 145 LSGGQQQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM 204
Cdd:PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM 451
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
18-248 |
4.96e-06 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 48.37 E-value: 4.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 18 SQARTVLKNVDLTIAAGEMVAIIGASGSGKSTL-MNIMGCLDVPDkGDYFINGQNAAHLSpdelARTRREHIGFIFQ--- 93
Cdd:cd03288 31 NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLsLAFFRMVDIFD-GKIVIDGIDISKLP----LHTLRSRLSIILQdpi 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 94 ------RYHLIPDLSALGNVEIPAIyansERGSRRMYATALLGrlGLKGREHHKPSELSGGQQQRVSIARALINGGEIIL 167
Cdd:cd03288 106 lfsgsiRFNLDPECKCTDDRLWEAL----EIAQLKNMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILI 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 168 ADEPTGALD--SQSGLEVLAILSELNRhghTVVMVTHDMTVARHAKRIIELRDGEIIsdsgSCVSVTKTWRQTNSIRQSY 245
Cdd:cd03288 180 MDEATASIDmaTENILQKVVMTAFADR---TVVTIAHRVSTILDADLVLVLSRGILV----ECDTPENLLAQEDGVFASL 252
|
...
gi 979479175 246 WQT 248
Cdd:cd03288 253 VRT 255
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
34-220 |
6.04e-06 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 46.60 E-value: 6.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 34 GEMVAIIGASGSGKSTLMN-IMGCLDVPDKGDYFINGQNAAHLSPDELartrrehigfifqryhlipdlsalgnveipai 112
Cdd:smart00382 2 GEVILIVGPPGSGKTTLARaLARELGPPGGGVIYIDGEDILEEVLDQL-------------------------------- 49
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 113 yansergsrrmyatallgrlgLKGREHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDS------QSGLEVLAI 186
Cdd:smart00382 50 ---------------------LLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAeqeallLLLEELRLL 108
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 979479175 187 LSELNRHGHTVVMVTH------DMTVARHAKRIIELRDGE 220
Cdd:smart00382 109 LLLKSEKNLTVILTTNdekdlgPALLRRRFDRRIVLLLIL 148
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
2-72 |
7.29e-06 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 49.12 E-value: 7.29e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 979479175 2 RKIIELKGISRTYGNGsQARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQNA 72
Cdd:PRK13545 19 KPFDKLKDLFFRSKDG-EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA 88
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
5-176 |
1.08e-05 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 48.75 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 5 IELKGISRTYGNGsqARTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLdVPDKGDYFINGqnaahLSPDELA-RT 83
Cdd:TIGR01271 1218 MDVQGLTAKYTEA--GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LSTEGEIQIDG-----VSWNSVTlQT 1289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 84 RREHIGFIFQRYHLIPDlSALGNVEIPAIYANSErgsrrMYATAllGRLGLKGREHHKPSE-----------LSGGQQQR 152
Cdd:TIGR01271 1290 WRKAFGVIPQKVFIFSG-TFRKNLDPYEQWSDEE-----IWKVA--EEVGLKSVIEQFPDKldfvlvdggyvLSNGHKQL 1361
|
170 180
....*....|....*....|....
gi 979479175 153 VSIARALINGGEIILADEPTGALD 176
Cdd:TIGR01271 1362 MCLARSILSKAKILLLDEPSAHLD 1385
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
19-204 |
1.09e-05 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 48.25 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 19 QARTVLKNVDLTIAAGEMVAIIGASGSGKSTL-MNIMGcldvpdK-------GDYFINGQNA-------------AHLSP 77
Cdd:NF040905 271 PERKVVDDVSLNVRRGEIVGIAGLMGAGRTELaMSVFG------RsygrnisGTVFKDGKEVdvstvsdaidaglAYVTE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 78 DelartrREHIGFIfqryhLIPDLSAlgNVEIPAIYANSERG---SRRMYATALLGRLGLKGREH---HKPSELSGGQQQ 151
Cdd:NF040905 345 D------RKGYGLN-----LIDDIKR--NITLANLGKVSRRGvidENEEIKVAEEYRKKMNIKTPsvfQKVGNLSGGNQQ 411
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 979479175 152 RVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDM 204
Cdd:NF040905 412 KVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGKGVIVISSEL 464
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
145-219 |
1.11e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 49.06 E-value: 1.11e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 979479175 145 LSGGQQQRVSIARALinGGEII----LADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIELRDG 219
Cdd:PRK00635 477 LSGGEQERTALAKHL--GAELIgityILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMISLADRIIDIGPG 553
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
1-50 |
1.73e-05 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 48.10 E-value: 1.73e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 979479175 1 MRKIIELKGisrtygngsqART-VLKNVDLTIAAGEMVAIIGASGSGKSTL 50
Cdd:COG0178 2 MMDKIRIRG----------AREhNLKNIDVDIPRNKLVVITGLSGSGKSSL 42
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
23-202 |
2.25e-05 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 47.92 E-value: 2.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 23 VLKNVDLTIAAGEMVAIIGASGSGKSTLMNIM------GCLD-------VPDKGDYF--ING---QNAAHlSPDELAR-- 82
Cdd:PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLagrktgGYIEgdirisgFPKKQETFarISGyceQNDIH-SPQVTVRes 973
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 83 -------------TRREHIGFIFQRYHLIpDLSALGNveipaiyansergsrrmyatALLGRLGLKGrehhkpseLSGGQ 149
Cdd:PLN03140 974 liysaflrlpkevSKEEKMMFVDEVMELV-ELDNLKD--------------------AIVGLPGVTG--------LSTEQ 1024
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 979479175 150 QQRVSIARALINGGEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTH 202
Cdd:PLN03140 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
3-203 |
2.74e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 47.25 E-value: 2.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 3 KII-ELKGISRTYGNgsqaRTVLKNVDLTIAAGEMVAIIGASGSGKSTLMNIM-GCLDvPDKGD----------YFinGQ 70
Cdd:PRK11147 317 KIVfEMENVNYQIDG----KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMlGQLQ-ADSGRihcgtklevaYF--DQ 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 71 NAAHLSP-----DELARTRRE--------HIGFIFQRYhLIPDLSALGNVEipaiyansergsrrmyatallgrlglkgr 137
Cdd:PRK11147 390 HRAELDPektvmDNLAEGKQEvmvngrprHVLGYLQDF-LFHPKRAMTPVK----------------------------- 439
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 979479175 138 ehhkpsELSGGQQQRVSIARALINGGEIILADEPTGALDsqsgLEVLAILSEL--NRHGhTVVMVTHD 203
Cdd:PRK11147 440 ------ALSGGERNRLLLARLFLKPSNLLILDEPTNDLD----VETLELLEELldSYQG-TVLLVSHD 496
|
|
| UvrA |
COG0178 |
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair]; |
145-222 |
2.10e-04 |
|
Excinuclease UvrABC ATPase subunit [Replication, recombination and repair];
Pssm-ID: 439948 [Multi-domain] Cd Length: 941 Bit Score: 44.63 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 145 LSGGQQQRVSIARALI---NGGEIILADEPTgaldsqSGL---EV---LAILSELNRHGHTVVMVTHDMTVARHAKRIIE 215
Cdd:COG0178 827 LSGGEAQRVKLASELSkrsTGKTLYILDEPT------TGLhfhDIrklLEVLHRLVDKGNTVVVIEHNLDVIKTADWIID 900
|
90
....*....|...
gi 979479175 216 L------RDGEII 222
Cdd:COG0178 901 LgpeggdGGGEIV 913
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
19-102 |
2.46e-04 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 43.24 E-value: 2.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 19 QARTVLKNVDLTIAAGEMVAIIGASGSGKSTL-MNIMGCLDVP-DKGDYFINGQNAAHLSPDELArtrREHIGFIFQRYH 96
Cdd:PRK09580 12 EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLsATLAGREDYEvTGGTVEFKGKDLLELSPEDRA---GEGIFMAFQYPV 88
|
....*.
gi 979479175 97 LIPDLS 102
Cdd:PRK09580 89 EIPGVS 94
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
145-216 |
3.17e-04 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 43.85 E-value: 3.17e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 979479175 145 LSGGQQQRVSIARALING--GEIILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIEL 216
Cdd:TIGR00630 489 LSGGEAQRIRLATQIGSGltGVLYVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEHDEDTIRAADYVIDI 562
|
|
| uvrA |
PRK00349 |
excinuclease ABC subunit UvrA; |
1-50 |
6.77e-04 |
|
excinuclease ABC subunit UvrA;
Pssm-ID: 234734 [Multi-domain] Cd Length: 943 Bit Score: 42.75 E-value: 6.77e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 979479175 1 MRKIIELKGisrtygngsqART-VLKNVDLTIAAGEMVAIIGASGSGKSTL 50
Cdd:PRK00349 2 MMDKIIIRG----------AREhNLKNIDLDIPRDKLVVFTGLSGSGKSSL 42
|
|
| PRK15177 |
PRK15177 |
Vi polysaccharide ABC transporter ATP-binding protein VexC; |
23-65 |
9.07e-04 |
|
Vi polysaccharide ABC transporter ATP-binding protein VexC;
Pssm-ID: 185099 [Multi-domain] Cd Length: 213 Bit Score: 41.20 E-value: 9.07e-04
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 979479175 23 VLKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDY 65
Cdd:PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF 44
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
38-223 |
1.14e-03 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 40.67 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 38 AIIGASGSGKSTlmnIMGCLDVPDKGDYFINGQNAAHLspDELAR--TRREHIGFIFQ-----RYHLIPDLSALGNVeip 110
Cdd:cd03240 26 LIVGQNGAGKTT---IIEALKYALTGELPPNSKGGAHD--PKLIRegEVRAQVKLAFEnangkKYTITRSLAILENV--- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 111 aIYANSERgsrrMYATALLGRlglkGRehhkpseLSGGQQQ------RVSIARALINGGEIILADEPTGALDSQSGLEVL 184
Cdd:cd03240 98 -IFCHQGE----SNWPLLDMR----GR-------CSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEENIEESL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 979479175 185 A-ILSELNRHGH-TVVMVTHDMTVARHAKRIIEL-RDGEIIS 223
Cdd:cd03240 162 AeIIEERKSQKNfQLIVITHDEELVDAADHIYRVeKDGRQKS 203
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
143-219 |
2.41e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 41.35 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 979479175 143 SELSGGQQQRVSIARALINGGE---IILADEPTGALDSQSGLEVLAILSELNRHGHTVVMVTHDMTVARHAKRIIELRDG 219
Cdd:PRK00635 1698 SSLSLSEKIAIKIAKFLYLPPKhptLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPG 1777
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
24-50 |
2.53e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 41.15 E-value: 2.53e-03
10 20
....*....|....*....|....*..
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTL 50
Cdd:TIGR00630 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
24-70 |
5.07e-03 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 39.41 E-value: 5.07e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 979479175 24 LKNVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDKGDYFINGQ 70
Cdd:PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE 86
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
138-202 |
6.23e-03 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 39.84 E-value: 6.23e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 979479175 138 EHHKPSELSGGQQQRVSIARALINGGEIILADEPTGALDSQSgleVLAILSELNRHGHTVVMVTH 202
Cdd:PLN03073 338 QVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHA---VLWLETYLLKWPKTFIVVSH 399
|
|
| AAA_29 |
pfam13555 |
P-loop containing region of AAA domain; |
26-62 |
9.10e-03 |
|
P-loop containing region of AAA domain;
Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 34.88 E-value: 9.10e-03
10 20 30
....*....|....*....|....*....|....*..
gi 979479175 26 NVDLTIAAGEMVAIIGASGSGKSTLMNIMGCLDVPDK 62
Cdd:pfam13555 14 GHTIPIDPRGNTLLTGPSGSGKSTLLDAIQTLLVPAK 50
|
|
| |
