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Conserved domains on  [gi|970495604|ref|WP_058772642|]
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Mks condensin complex protein MksB [Pseudomonas rhizoryzae]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
condensinMksB NF040857
Mks condensin complex protein MksB;
1-412 0e+00

Mks condensin complex protein MksB;


:

Pssm-ID: 468795  Cd Length: 412  Bit Score: 727.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604   1 MIDPKRVLRTLAEHWHLIDPLCAHFDSGTLGLAELRARLAEQLPERTPADLTALLDTWIRLDILVPVAKSPNRFELNGQI 80
Cdd:NF040857   1 MIDPKRVLRALAEHWALLEPLCERFDSGTLSLAELRSQLAAQLPDSTPADITALLDQWIRLDILVPVAKSPNRFELNAQI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604  81 HDFLGYLRREHRLGLCLEIEAYLRHLERLAGHIREAFDNRDGPDLARQLRLLDMRVRDVLKKLANDGHALEGVAERAKTS 160
Cdd:NF040857  81 HDFLAYLRREHRLGLCLEIEAYLRHLERLAGHIQDAFEIRDGNDLARQLRLLDMRVRDVLKKLANDEQALVGVAERAKTS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604 161 DRQIPLRQRYAEVLATWDEYVEPMIQLVAADGAFERGVHRVEQVLLHLLGEQQRLGHLVDDDLLLRTQARILEMHNAAQL 240
Cdd:NF040857 161 DRQIPLRQRYAEVLATWDEYVEPMIQLVSADGAFEQGVRRVEQVLLRLLGEQQRLGHLVDDDLLLRTHARILEMQTTAQL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604 241 ALRRARELLLPLREEARRHNAVTRGAALALAAIRRRGLDAVPQAALPLFSRPQSVFLGTAAQVESYVYALARFEPKPARF 320
Cdd:NF040857 241 TLRRARELLLPLREEARRHNAVTRGAALALAAIRRKGLDAVPQAALPLFSRPQSTFLGTASQVEAYVYALARFEPKPARF 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604 321 PSQSNRQRDSERPAAPRTVREMVDLCQDALPLPDLMAWLLEQEPAGDTDELLYWFSRLSRDARFQRERLDRRHYDTLEHR 400
Cdd:NF040857 321 PKASGKRKGGEPPRAPRTAREMLERCEAALPLPDLMAWLLEQEPEGATDELLYWFSRLSRDARFQRERLERRDYLTREHR 400
                        410
                 ....*....|..
gi 970495604 401 VSLCSYALAARS 412
Cdd:NF040857 401 VSLCSFALAAAP 412
 
Name Accession Description Interval E-value
condensinMksB NF040857
Mks condensin complex protein MksB;
1-412 0e+00

Mks condensin complex protein MksB;


Pssm-ID: 468795  Cd Length: 412  Bit Score: 727.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604   1 MIDPKRVLRTLAEHWHLIDPLCAHFDSGTLGLAELRARLAEQLPERTPADLTALLDTWIRLDILVPVAKSPNRFELNGQI 80
Cdd:NF040857   1 MIDPKRVLRALAEHWALLEPLCERFDSGTLSLAELRSQLAAQLPDSTPADITALLDQWIRLDILVPVAKSPNRFELNAQI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604  81 HDFLGYLRREHRLGLCLEIEAYLRHLERLAGHIREAFDNRDGPDLARQLRLLDMRVRDVLKKLANDGHALEGVAERAKTS 160
Cdd:NF040857  81 HDFLAYLRREHRLGLCLEIEAYLRHLERLAGHIQDAFEIRDGNDLARQLRLLDMRVRDVLKKLANDEQALVGVAERAKTS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604 161 DRQIPLRQRYAEVLATWDEYVEPMIQLVAADGAFERGVHRVEQVLLHLLGEQQRLGHLVDDDLLLRTQARILEMHNAAQL 240
Cdd:NF040857 161 DRQIPLRQRYAEVLATWDEYVEPMIQLVSADGAFEQGVRRVEQVLLRLLGEQQRLGHLVDDDLLLRTHARILEMQTTAQL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604 241 ALRRARELLLPLREEARRHNAVTRGAALALAAIRRRGLDAVPQAALPLFSRPQSVFLGTAAQVESYVYALARFEPKPARF 320
Cdd:NF040857 241 TLRRARELLLPLREEARRHNAVTRGAALALAAIRRKGLDAVPQAALPLFSRPQSTFLGTASQVEAYVYALARFEPKPARF 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604 321 PSQSNRQRDSERPAAPRTVREMVDLCQDALPLPDLMAWLLEQEPAGDTDELLYWFSRLSRDARFQRERLDRRHYDTLEHR 400
Cdd:NF040857 321 PKASGKRKGGEPPRAPRTAREMLERCEAALPLPDLMAWLLEQEPEGATDELLYWFSRLSRDARFQRERLERRDYLTREHR 400
                        410
                 ....*....|..
gi 970495604 401 VSLCSYALAARS 412
Cdd:NF040857 401 VSLCSFALAAAP 412
 
Name Accession Description Interval E-value
condensinMksB NF040857
Mks condensin complex protein MksB;
1-412 0e+00

Mks condensin complex protein MksB;


Pssm-ID: 468795  Cd Length: 412  Bit Score: 727.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604   1 MIDPKRVLRTLAEHWHLIDPLCAHFDSGTLGLAELRARLAEQLPERTPADLTALLDTWIRLDILVPVAKSPNRFELNGQI 80
Cdd:NF040857   1 MIDPKRVLRALAEHWALLEPLCERFDSGTLSLAELRSQLAAQLPDSTPADITALLDQWIRLDILVPVAKSPNRFELNAQI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604  81 HDFLGYLRREHRLGLCLEIEAYLRHLERLAGHIREAFDNRDGPDLARQLRLLDMRVRDVLKKLANDGHALEGVAERAKTS 160
Cdd:NF040857  81 HDFLAYLRREHRLGLCLEIEAYLRHLERLAGHIQDAFEIRDGNDLARQLRLLDMRVRDVLKKLANDEQALVGVAERAKTS 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604 161 DRQIPLRQRYAEVLATWDEYVEPMIQLVAADGAFERGVHRVEQVLLHLLGEQQRLGHLVDDDLLLRTQARILEMHNAAQL 240
Cdd:NF040857 161 DRQIPLRQRYAEVLATWDEYVEPMIQLVSADGAFEQGVRRVEQVLLRLLGEQQRLGHLVDDDLLLRTHARILEMQTTAQL 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604 241 ALRRARELLLPLREEARRHNAVTRGAALALAAIRRRGLDAVPQAALPLFSRPQSVFLGTAAQVESYVYALARFEPKPARF 320
Cdd:NF040857 241 TLRRARELLLPLREEARRHNAVTRGAALALAAIRRKGLDAVPQAALPLFSRPQSTFLGTASQVEAYVYALARFEPKPARF 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970495604 321 PSQSNRQRDSERPAAPRTVREMVDLCQDALPLPDLMAWLLEQEPAGDTDELLYWFSRLSRDARFQRERLDRRHYDTLEHR 400
Cdd:NF040857 321 PKASGKRKGGEPPRAPRTAREMLERCEAALPLPDLMAWLLEQEPEGATDELLYWFSRLSRDARFQRERLERRDYLTREHR 400
                        410
                 ....*....|..
gi 970495604 401 VSLCSYALAARS 412
Cdd:NF040857 401 VSLCSFALAAAP 412
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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