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Conserved domains on  [gi|970298435|ref|WP_058670810|]
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MULTISPECIES: ABC transporter permease [Enterobacteriaceae]

Protein Classification

ABC transporter permease( domain architecture ID 10003058)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates such as monosaccharide sugars such as xylose, arabinose, and fructose

Gene Ontology:  GO:0140359|GO:0042626
TCDB:  3.A.1

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AraH COG1172
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ...
15-328 5.43e-68

Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440785  Cd Length: 322  Bit Score: 216.13  E-value: 5.43e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  15 GLLAICLIATVAFSLAMPGrFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINY-IPVd 93
Cdd:COG1172   20 GLLLALVLLLVVFSILSPG-FLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALgLPI- 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  94 asigiqlmwlVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVIWG 173
Cdd:COG1172   98 ----------LLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLG 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 174 VPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGD 253
Cdd:COG1172  168 IPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGS 247
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 970298435 254 SYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALAFKFFKNKWQAQ 328
Cdd:COG1172  248 GYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
 
Name Accession Description Interval E-value
AraH COG1172
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ...
15-328 5.43e-68

Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440785  Cd Length: 322  Bit Score: 216.13  E-value: 5.43e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  15 GLLAICLIATVAFSLAMPGrFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINY-IPVd 93
Cdd:COG1172   20 GLLLALVLLLVVFSILSPG-FLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALgLPI- 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  94 asigiqlmwlVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVIWG 173
Cdd:COG1172   98 ----------LLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLG 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 174 VPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGD 253
Cdd:COG1172  168 IPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGS 247
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 970298435 254 SYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALAFKFFKNKWQAQ 328
Cdd:COG1172  248 GYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
TM_PBP1_transp_AraH_like cd06579
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ...
49-318 2.48e-62

Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.


Pssm-ID: 119321 [Multi-domain]  Cd Length: 263  Bit Score: 199.56  E-value: 2.48e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  49 PELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINYipvdasigiqLMWLVLALLGAAGIAVLIGVLTGLMISRV 128
Cdd:cd06579    2 AVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNA----------GLPIPLAILAALAVGALIGLLNGLLVAYL 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 129 GAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVR-SMGSEVIWGVPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSN 207
Cdd:cd06579   72 RIPPFIVTLGTMFILRGLALLITGGRPISGLPPLFSfFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGN 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 208 INATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVL 287
Cdd:cd06579  152 PEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLL 231
                        250       260       270
                 ....*....|....*....|....*....|.
gi 970298435 288 QVIATGLSLAGVSLHFNLAVWGITLIFALAF 318
Cdd:cd06579  232 GVLNNGLNLLGVSSFWQQIVKGAILLLAVAL 262
PRK09699 PRK09699
D-allose ABC transporter permease;
15-317 1.23e-35

D-allose ABC transporter permease;


Pssm-ID: 182035 [Multi-domain]  Cd Length: 312  Bit Score: 131.43  E-value: 1.23e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  15 GLLAICLIATVAFSLAMPGRFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLInyipvda 94
Cdd:PRK09699  13 GTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLML------- 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  95 sIGIQLmwLVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMP-PIVRSMGSEVIwG 173
Cdd:PRK09699  86 -AGVDP--FLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSfDFVNFFAASVI-G 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 174 VPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGD 253
Cdd:PRK09699 162 IPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGM 241
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 970298435 254 SYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALA 317
Cdd:PRK09699 242 GFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVA 305
BPD_transp_2 pfam02653
Branched-chain amino acid transport system / permease component; This is a large family mainly ...
63-316 7.67e-15

Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.


Pssm-ID: 396977 [Multi-domain]  Cd Length: 269  Bit Score: 73.45  E-value: 7.67e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435   63 LSGGLNLSIiGTANLTSLFMAWLLINYipvdasigiQLMWLVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTI 142
Cdd:pfam02653  25 IAGVINLGH-GGFMMLGAYVAAMLLNL---------LGPGLWLALPVGILVGAAVGLLIGILTLRLKINEVIITLLLNLA 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  143 ISGIGVYLTKGA-----ALSGMPPIVRSMGSEVIWGVPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIR 217
Cdd:pfam02653  95 ALGLALFLVTGIlggegGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAVGENEEAARAAGIN 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  218 TDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYLLLTVLAIVLggtdpFGGVGKIIHVFCALLVLQVIAT-GLSL 296
Cdd:pfam02653 175 VKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGVGLGLDAIAAVV-----LGGAGSPIGVVIGSLIIGLVQSlGLGA 249
                         250       260
                  ....*....|....*....|
gi 970298435  297 AGVSLHFNLAVWGITLIFAL 316
Cdd:pfam02653 250 LGSPPELSLLVLGALLILVL 269
 
Name Accession Description Interval E-value
AraH COG1172
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ...
15-328 5.43e-68

Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440785  Cd Length: 322  Bit Score: 216.13  E-value: 5.43e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  15 GLLAICLIATVAFSLAMPGrFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINY-IPVd 93
Cdd:COG1172   20 GLLLALVLLLVVFSILSPG-FLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALgLPI- 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  94 asigiqlmwlVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVIWG 173
Cdd:COG1172   98 ----------LLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLG 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 174 VPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGD 253
Cdd:COG1172  168 IPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGS 247
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 970298435 254 SYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALAFKFFKNKWQAQ 328
Cdd:COG1172  248 GYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
TM_PBP1_transp_AraH_like cd06579
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ...
49-318 2.48e-62

Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.


Pssm-ID: 119321 [Multi-domain]  Cd Length: 263  Bit Score: 199.56  E-value: 2.48e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  49 PELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINYipvdasigiqLMWLVLALLGAAGIAVLIGVLTGLMISRV 128
Cdd:cd06579    2 AVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNA----------GLPIPLAILAALAVGALIGLLNGLLVAYL 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 129 GAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVR-SMGSEVIWGVPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSN 207
Cdd:cd06579   72 RIPPFIVTLGTMFILRGLALLITGGRPISGLPPLFSfFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGN 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 208 INATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVL 287
Cdd:cd06579  152 PEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLL 231
                        250       260       270
                 ....*....|....*....|....*....|.
gi 970298435 288 QVIATGLSLAGVSLHFNLAVWGITLIFALAF 318
Cdd:cd06579  232 GVLNNGLNLLGVSSFWQQIVKGAILLLAVAL 262
PRK09699 PRK09699
D-allose ABC transporter permease;
15-317 1.23e-35

D-allose ABC transporter permease;


Pssm-ID: 182035 [Multi-domain]  Cd Length: 312  Bit Score: 131.43  E-value: 1.23e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  15 GLLAICLIATVAFSLAMPGRFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLInyipvda 94
Cdd:PRK09699  13 GTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLML------- 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  95 sIGIQLmwLVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMP-PIVRSMGSEVIwG 173
Cdd:PRK09699  86 -AGVDP--FLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSfDFVNFFAASVI-G 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 174 VPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGD 253
Cdd:PRK09699 162 IPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGM 241
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 970298435 254 SYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALA 317
Cdd:PRK09699 242 GFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVA 305
XylH COG4214
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
15-318 2.13e-31

ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443360 [Multi-domain]  Cd Length: 393  Bit Score: 121.76  E-value: 2.13e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  15 GLLAICLIatvaFSLAMPGRFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINYipvda 94
Cdd:COG4214   30 ALVVIWIV----FQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNW----- 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  95 sigiqLMWLVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVIW-- 172
Cdd:COG4214  101 -----GLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIGNGFLPdi 175
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 173 --------------------------------------------------------------GVPVPLIIFIVATVFLAL 190
Cdd:COG4214  176 lgtlswvlgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllnsyrGIPIVVLILLVLVVVYTF 255
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 191 LLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYLLLTVLAIVLGGTDP 270
Cdd:COG4214  256 VLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSL 335
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 970298435 271 FGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALAF 318
Cdd:COG4214  336 FGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAF 383
rbsC PRK09512
ribose ABC transporter permease protein; Reviewed
19-315 4.97e-27

ribose ABC transporter permease protein; Reviewed


Pssm-ID: 181922 [Multi-domain]  Cd Length: 320  Bit Score: 108.65  E-value: 4.97e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  19 ICLIATVAFslaMPGRFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINYIPVDASIGI 98
Cdd:PRK09512  26 LVLIAIVST---LSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVPA 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  99 QLmwlvlaLLGAAgiavlIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKG----AALSGMPPIVRSMGSEVIWGV 174
Cdd:PRK09512 103 AL------ALGAA-----IGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGspinTGFTDNADLFGWFGIGRPLGI 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 175 PVPliIFIVATVFLA--LLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYG 252
Cdd:PRK09512 172 PTP--VWIMAIVFLAawYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAG 249
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 970298435 253 DSYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFA 315
Cdd:PRK09512 250 TGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLA 312
PRK15038 PRK15038
autoinducer 2 ABC transporter permease LsrD;
11-316 2.66e-26

autoinducer 2 ABC transporter permease LsrD;


Pssm-ID: 184998  Cd Length: 330  Bit Score: 106.84  E-value: 2.66e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  11 GTSTGLLAICLIATVAFSLAMPgRFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINYI 90
Cdd:PRK15038   6 GWELALAALLVIEILAFGLINP-RMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGV 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  91 PVDASIGIQLmwlvlaLLGAagiavLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYL------TKGAALSGMPPIVR 164
Cdd:PRK15038  85 PMPLAILLTL------LLGA-----LCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLsgmagaTGYEGIGGFPMAFT 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 165 SMGSEVIWGVPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARF 244
Cdd:PRK15038 154 DFANLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYF 233
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 970298435 245 NSARMGYGDSYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFAL 316
Cdd:PRK15038 234 GSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
mglC PRK09478
galactose/methyl galactoside ABC transporter permease MglC;
103-322 2.49e-25

galactose/methyl galactoside ABC transporter permease MglC;


Pssm-ID: 181892 [Multi-domain]  Cd Length: 336  Bit Score: 104.38  E-value: 2.49e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 103 LVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTK---GAALSGMPPIVRSM--GSEVIWGVPVP 177
Cdd:PRK09478 105 IALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDfvgASPISGFDSGFSTFaqGFVALGSFRLS 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 178 LIIF--IVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSY 255
Cdd:PRK09478 185 YITFyaLIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMY 264
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 970298435 256 LLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALAFKFFK 322
Cdd:PRK09478 265 ELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSLK 331
araH PRK11285
L-arabinose transporter permease protein; Provisional
15-324 4.46e-22

L-arabinose transporter permease protein; Provisional


Pssm-ID: 183076 [Multi-domain]  Cd Length: 333  Bit Score: 95.13  E-value: 4.46e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  15 GLLAICLIATVAFSLAMPGrFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTanltslfmawllINYIPVDA 94
Cdd:PRK11285  31 GMLVVFAVLFIACSLFVPN-FASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASV------------VAFAGVVT 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  95 SIGIQLMW-LVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVIWG 173
Cdd:PRK11285  98 AVVINATEsLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFALGYANFFG 177
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 174 VPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGD 253
Cdd:PRK11285 178 VPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSI 257
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 970298435 254 SYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALAFKFFKNK 324
Cdd:PRK11285 258 GFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQR 328
BPD_transp_2 pfam02653
Branched-chain amino acid transport system / permease component; This is a large family mainly ...
63-316 7.67e-15

Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.


Pssm-ID: 396977 [Multi-domain]  Cd Length: 269  Bit Score: 73.45  E-value: 7.67e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435   63 LSGGLNLSIiGTANLTSLFMAWLLINYipvdasigiQLMWLVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTI 142
Cdd:pfam02653  25 IAGVINLGH-GGFMMLGAYVAAMLLNL---------LGPGLWLALPVGILVGAAVGLLIGILTLRLKINEVIITLLLNLA 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  143 ISGIGVYLTKGA-----ALSGMPPIVRSMGSEVIWGVPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIR 217
Cdd:pfam02653  95 ALGLALFLVTGIlggegGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAVGENEEAARAAGIN 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  218 TDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYLLLTVLAIVLggtdpFGGVGKIIHVFCALLVLQVIAT-GLSL 296
Cdd:pfam02653 175 VKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGVGLGLDAIAAVV-----LGGAGSPIGVVIGSLIIGLVQSlGLGA 249
                         250       260
                  ....*....|....*....|
gi 970298435  297 AGVSLHFNLAVWGITLIFAL 316
Cdd:pfam02653 250 LGSPPELSLLVLGALLILVL 269
PRK15432 PRK15432
autoinducer 2 ABC transporter permease LsrC; Provisional
103-318 2.82e-14

autoinducer 2 ABC transporter permease LsrC; Provisional


Pssm-ID: 185330 [Multi-domain]  Cd Length: 344  Bit Score: 72.84  E-value: 2.82e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 103 LVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVIWGVPVPLIIFI 182
Cdd:PRK15432  88 LPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILLGISPIGWLTL 167
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 183 VATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYLLLTVLA 262
Cdd:PRK15432 168 ILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAA 247
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 970298435 263 IVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALAF 318
Cdd:PRK15432 248 CVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVF 303
TM_PBP1_branched-chain-AA_like cd06574
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ...
104-315 8.10e-11

Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.


Pssm-ID: 119320 [Multi-domain]  Cd Length: 266  Bit Score: 61.52  E-value: 8.10e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 104 VLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALS-----GMPPIVRSMGSEVIWGVPVPL 178
Cdd:cd06574   47 WLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILIMIGLYSINLRIMGGPNIPlgtrdTLLGLLLLFGISGTLSIPVVL 126
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 179 IIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYLLL 258
Cdd:cd06574  127 LLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVI 206
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 259 TVLAIVLGGT--DPFGGVGKIIHVFCALLVLQVI-ATGLSLAGVSLHFNLAVWGITLIFA 315
Cdd:cd06574  207 GLAAVIIGGAivGRRTIKASILGVIIGAILYRIAlALALGSGLIPSDLKLITAGVIVLVL 266
PRK11618 PRK11618
inner membrane ABC transporter permease protein YjfF; Provisional
3-298 2.18e-10

inner membrane ABC transporter permease protein YjfF; Provisional


Pssm-ID: 183235 [Multi-domain]  Cd Length: 317  Bit Score: 60.74  E-value: 2.18e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435   3 NKPFLPLDGTSTGLLAICLIATVAF----SLAMPGRFLTENTFLSIAfqlpelgllTFAMFVPMLSGGLNLSIIGTANLT 78
Cdd:PRK11618   2 IKRNLPLMITIGVFVLGYLFCLVQFpgfaSTRVICNLLTDNAFLGIV---------AVGMTFVILSGGIDLSVGSVIAFT 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  79 SLFMAWLLINY-IPVDASIGIQLMwlvlallgaagIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGvYLTKGAALS 157
Cdd:PRK11618  73 GVFLAKLIGDYgWSPLLAFPLVLV-----------MGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVS-FLVSEESIP 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 158 GMPPIVRSMgSEVIWGVP------VPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSL 231
Cdd:PRK11618 141 INHPFYDTL-SSLAWKLPgggrlsAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGF 219
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 232 LCVLAGlIMMARFNSArmGYGDSYL---LLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAG 298
Cdd:PRK11618 220 LATLAG-IVFSLYTSA--GYALAAVgveLDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDG 286
TM_PBP1_LivH_like cd06582
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ...
103-267 2.58e-09

Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.


Pssm-ID: 119324 [Multi-domain]  Cd Length: 272  Bit Score: 57.44  E-value: 2.58e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 103 LVLALLGAAGIAVLIGVLT-GLMISRV---GAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRsmGSEVIWGVPVP- 177
Cdd:cd06582   51 FWLALLLALLVAALLGVLLeRLVLRPLrgaPLLTLLITFGGLLILLQGLLLIFGGDPRVPPPPLLS--GSVELGGVTIPp 128
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 178 -----LIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGlIMMARFNSARMGYG 252
Cdd:cd06582  129 yrlfiIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAG-VLLAPITGVSPTMG 207
                        170
                 ....*....|....*
gi 970298435 253 DSYLLLTVLAIVLGG 267
Cdd:cd06582  208 LLLLLKAFAAVVLGG 222
LivH COG0559
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ...
100-267 3.15e-09

Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440325 [Multi-domain]  Cd Length: 290  Bit Score: 56.99  E-value: 3.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 100 LMWLVLALLGAAGIAVLIGVLTGLMISRVGAHP---------ILVTLGSMTIISGIgVYLTKGAALSGMPPIVRsmGSEV 170
Cdd:COG0559   54 ATLLGLPLWLALLLAVLVAALLGVLLERLVIRPlrgapplalLLATIGLSLVLQGL-VLLIFGADPRSFPALLS--GSVE 130
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 171 IWGVPVP---LIIFIVATVFLALL---LGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGlIMMARF 244
Cdd:COG0559  131 LGGVSIPayrLFIIVVALVLLAALwlfLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAG-VLLAPI 209
                        170       180
                 ....*....|....*....|...
gi 970298435 245 NSARMGYGDSYLLLTVLAIVLGG 267
Cdd:COG0559  210 YSVSPTMGFLLGLKAFAAVVLGG 232
TM_PBP1_transp_TpRbsC_like cd06580
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ...
103-272 2.43e-07

Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.


Pssm-ID: 119322 [Multi-domain]  Cd Length: 234  Bit Score: 50.90  E-value: 2.43e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 103 LVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLtkgaalsgmppivrsmgseviwgvpvpLIIFI 182
Cdd:cd06580   50 LPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIALGLTSYL---------------------------LLLAL 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 183 VATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIM-MARFNSARMGYGDSYLLLTVL 261
Cdd:cd06580  103 LLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLvLGVQGRFTEGMSAGYGFIAIA 182
                        170
                 ....*....|.
gi 970298435 262 AIVLGGTDPFG 272
Cdd:cd06580  183 VALLGRWNPLG 193
TM_PBP1_LivM_like cd06581
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ...
103-318 3.47e-05

Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.


Pssm-ID: 119323 [Multi-domain]  Cd Length: 268  Bit Score: 44.74  E-value: 3.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 103 LVLALLGAAGIAVLIGVLTGLMISRVGAHP-ILVTLGSMTIISGIGVY---LTKGAA-LSGMPPIVRSMGSEV-IWGVPV 176
Cdd:cd06581   47 FWLALLAAGLVAALVGLLLGLPALRLRGVYfAIATLAFAEIVRLLALNwssLTGGSNgLSGIPPPLLGGLLLSsPLAFYY 126
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 177 PLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYL 256
Cdd:cd06581  127 LVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGFAL 206
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 970298435 257 LLTVLAIVLggtdpFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHfnLAVWGITLIFALAF 318
Cdd:cd06581  207 SIELLLMVV-----LGGLGSLLGPVLGAALLVLLPELLRSLGPGLR--LLVFGLLLILVVLF 261
PRK10740 PRK10740
high-affinity branched-chain amino acid ABC transporter permease LivH;
71-240 7.87e-03

high-affinity branched-chain amino acid ABC transporter permease LivH;


Pssm-ID: 182689 [Multi-domain]  Cd Length: 308  Bit Score: 37.60  E-value: 7.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435  71 IIGTANLT--SLFMAWLLINYIPVDA--SIGIQLMWLvlaLLGAAGI-AVLIGVLTGLMISRVGAHPILVTLGSMTIISG 145
Cdd:PRK10740  35 IIGMINFAhgEVYMIGSYVSFMIIAAlmMMGIDTSWL---LVAAGFVgAIVIASAYGWSIERVAYRPVRNSKRLIALISA 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 146 IG--------VYLTKGAALSGMPPIVRS---MGSEVIWGVPVP---LIIFIV---ATVFLALLLGRTRLGKNIYMCGSNI 208
Cdd:PRK10740 112 IGmsiflqnyVSLTEGSRDVALPSLFNGqwvVGHSENFSASITtmqAVIWIVtflAMLALTIFIRYSRMGRACRACAEDL 191
                        170       180       190
                 ....*....|....*....|....*....|..
gi 970298435 209 NATWFSGIRTDRIMMAIYAISSLLCVLAGLIM 240
Cdd:PRK10740 192 KMASLLGINTDRVIALTFVIGAAMAAVAGVLL 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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