|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
15-328 |
5.43e-68 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 216.13 E-value: 5.43e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 15 GLLAICLIATVAFSLAMPGrFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINY-IPVd 93
Cdd:COG1172 20 GLLLALVLLLVVFSILSPG-FLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALgLPI- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 94 asigiqlmwlVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVIWG 173
Cdd:COG1172 98 ----------LLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 174 VPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGD 253
Cdd:COG1172 168 IPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGS 247
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 970298435 254 SYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALAFKFFKNKWQAQ 328
Cdd:COG1172 248 GYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
49-318 |
2.48e-62 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 199.56 E-value: 2.48e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 49 PELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINYipvdasigiqLMWLVLALLGAAGIAVLIGVLTGLMISRV 128
Cdd:cd06579 2 AVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNA----------GLPIPLAILAALAVGALIGLLNGLLVAYL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 129 GAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVR-SMGSEVIWGVPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSN 207
Cdd:cd06579 72 RIPPFIVTLGTMFILRGLALLITGGRPISGLPPLFSfFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGN 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 208 INATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVL 287
Cdd:cd06579 152 PEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLL 231
|
250 260 270
....*....|....*....|....*....|.
gi 970298435 288 QVIATGLSLAGVSLHFNLAVWGITLIFALAF 318
Cdd:cd06579 232 GVLNNGLNLLGVSSFWQQIVKGAILLLAVAL 262
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
15-317 |
1.23e-35 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 131.43 E-value: 1.23e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 15 GLLAICLIATVAFSLAMPGRFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLInyipvda 94
Cdd:PRK09699 13 GTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLML------- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 95 sIGIQLmwLVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMP-PIVRSMGSEVIwG 173
Cdd:PRK09699 86 -AGVDP--FLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSfDFVNFFAASVI-G 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 174 VPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGD 253
Cdd:PRK09699 162 IPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGM 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 970298435 254 SYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALA 317
Cdd:PRK09699 242 GFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVA 305
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
63-316 |
7.67e-15 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 73.45 E-value: 7.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 63 LSGGLNLSIiGTANLTSLFMAWLLINYipvdasigiQLMWLVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTI 142
Cdd:pfam02653 25 IAGVINLGH-GGFMMLGAYVAAMLLNL---------LGPGLWLALPVGILVGAAVGLLIGILTLRLKINEVIITLLLNLA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 143 ISGIGVYLTKGA-----ALSGMPPIVRSMGSEVIWGVPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIR 217
Cdd:pfam02653 95 ALGLALFLVTGIlggegGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAVGENEEAARAAGIN 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 218 TDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYLLLTVLAIVLggtdpFGGVGKIIHVFCALLVLQVIAT-GLSL 296
Cdd:pfam02653 175 VKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGVGLGLDAIAAVV-----LGGAGSPIGVVIGSLIIGLVQSlGLGA 249
|
250 260
....*....|....*....|
gi 970298435 297 AGVSLHFNLAVWGITLIFAL 316
Cdd:pfam02653 250 LGSPPELSLLVLGALLILVL 269
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
15-328 |
5.43e-68 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 216.13 E-value: 5.43e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 15 GLLAICLIATVAFSLAMPGrFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINY-IPVd 93
Cdd:COG1172 20 GLLLALVLLLVVFSILSPG-FLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALgLPI- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 94 asigiqlmwlVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVIWG 173
Cdd:COG1172 98 ----------LLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGSLLG 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 174 VPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGD 253
Cdd:COG1172 168 IPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGS 247
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 970298435 254 SYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALAFKFFKNKWQAQ 328
Cdd:COG1172 248 GYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
49-318 |
2.48e-62 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 199.56 E-value: 2.48e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 49 PELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINYipvdasigiqLMWLVLALLGAAGIAVLIGVLTGLMISRV 128
Cdd:cd06579 2 AVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNA----------GLPIPLAILAALAVGALIGLLNGLLVAYL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 129 GAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVR-SMGSEVIWGVPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSN 207
Cdd:cd06579 72 RIPPFIVTLGTMFILRGLALLITGGRPISGLPPLFSfFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGN 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 208 INATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVL 287
Cdd:cd06579 152 PEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLL 231
|
250 260 270
....*....|....*....|....*....|.
gi 970298435 288 QVIATGLSLAGVSLHFNLAVWGITLIFALAF 318
Cdd:cd06579 232 GVLNNGLNLLGVSSFWQQIVKGAILLLAVAL 262
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
15-317 |
1.23e-35 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 131.43 E-value: 1.23e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 15 GLLAICLIATVAFSLAMPGRFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLInyipvda 94
Cdd:PRK09699 13 GTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLML------- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 95 sIGIQLmwLVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMP-PIVRSMGSEVIwG 173
Cdd:PRK09699 86 -AGVDP--FLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSfDFVNFFAASVI-G 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 174 VPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGD 253
Cdd:PRK09699 162 IPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGM 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 970298435 254 SYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALA 317
Cdd:PRK09699 242 GFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVA 305
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
15-318 |
2.13e-31 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 121.76 E-value: 2.13e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 15 GLLAICLIatvaFSLAMPGRFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINYipvda 94
Cdd:COG4214 30 ALVVIWIV----FQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNW----- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 95 sigiqLMWLVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVIW-- 172
Cdd:COG4214 101 -----GLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFDPTFQAIGNGFLPdi 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 173 --------------------------------------------------------------GVPVPLIIFIVATVFLAL 190
Cdd:COG4214 176 lgtlswvlgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllnsyrGIPIVVLILLVLVVVYTF 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 191 LLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYLLLTVLAIVLGGTDP 270
Cdd:COG4214 256 VLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSL 335
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 970298435 271 FGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALAF 318
Cdd:COG4214 336 FGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAF 383
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
19-315 |
4.97e-27 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 108.65 E-value: 4.97e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 19 ICLIATVAFslaMPGRFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINYIPVDASIGI 98
Cdd:PRK09512 26 LVLIAIVST---LSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVPA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 99 QLmwlvlaLLGAAgiavlIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKG----AALSGMPPIVRSMGSEVIWGV 174
Cdd:PRK09512 103 AL------ALGAA-----IGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGspinTGFTDNADLFGWFGIGRPLGI 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 175 PVPliIFIVATVFLA--LLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYG 252
Cdd:PRK09512 172 PTP--VWIMAIVFLAawYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAG 249
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 970298435 253 DSYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFA 315
Cdd:PRK09512 250 TGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLA 312
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
11-316 |
2.66e-26 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 106.84 E-value: 2.66e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 11 GTSTGLLAICLIATVAFSLAMPgRFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSLFMAWLLINYI 90
Cdd:PRK15038 6 GWELALAALLVIEILAFGLINP-RMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 91 PVDASIGIQLmwlvlaLLGAagiavLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYL------TKGAALSGMPPIVR 164
Cdd:PRK15038 85 PMPLAILLTL------LLGA-----LCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLsgmagaTGYEGIGGFPMAFT 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 165 SMGSEVIWGVPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARF 244
Cdd:PRK15038 154 DFANLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYF 233
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 970298435 245 NSARMGYGDSYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFAL 316
Cdd:PRK15038 234 GSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
103-322 |
2.49e-25 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 104.38 E-value: 2.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 103 LVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTK---GAALSGMPPIVRSM--GSEVIWGVPVP 177
Cdd:PRK09478 105 IALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDfvgASPISGFDSGFSTFaqGFVALGSFRLS 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 178 LIIF--IVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSY 255
Cdd:PRK09478 185 YITFyaLIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMY 264
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 970298435 256 LLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALAFKFFK 322
Cdd:PRK09478 265 ELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSLK 331
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
15-324 |
4.46e-22 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 95.13 E-value: 4.46e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 15 GLLAICLIATVAFSLAMPGrFLTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTanltslfmawllINYIPVDA 94
Cdd:PRK11285 31 GMLVVFAVLFIACSLFVPN-FASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASV------------VAFAGVVT 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 95 SIGIQLMW-LVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVIWG 173
Cdd:PRK11285 98 AVVINATEsLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFALGYANFFG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 174 VPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGD 253
Cdd:PRK11285 178 VPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSI 257
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 970298435 254 SYLLLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALAFKFFKNK 324
Cdd:PRK11285 258 GFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQR 328
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
63-316 |
7.67e-15 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 73.45 E-value: 7.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 63 LSGGLNLSIiGTANLTSLFMAWLLINYipvdasigiQLMWLVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTI 142
Cdd:pfam02653 25 IAGVINLGH-GGFMMLGAYVAAMLLNL---------LGPGLWLALPVGILVGAAVGLLIGILTLRLKINEVIITLLLNLA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 143 ISGIGVYLTKGA-----ALSGMPPIVRSMGSEVIWGVPVPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIR 217
Cdd:pfam02653 95 ALGLALFLVTGIlggegGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAVGENEEAARAAGIN 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 218 TDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYLLLTVLAIVLggtdpFGGVGKIIHVFCALLVLQVIAT-GLSL 296
Cdd:pfam02653 175 VKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGVGLGLDAIAAVV-----LGGAGSPIGVVIGSLIIGLVQSlGLGA 249
|
250 260
....*....|....*....|
gi 970298435 297 AGVSLHFNLAVWGITLIFAL 316
Cdd:pfam02653 250 LGSPPELSLLVLGALLILVL 269
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
103-318 |
2.82e-14 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 72.84 E-value: 2.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 103 LVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVIWGVPVPLIIFI 182
Cdd:PRK15432 88 LPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILLGISPIGWLTL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 183 VATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYLLLTVLA 262
Cdd:PRK15432 168 ILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAA 247
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 970298435 263 IVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHFNLAVWGITLIFALAF 318
Cdd:PRK15432 248 CVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVF 303
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
104-315 |
8.10e-11 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 61.52 E-value: 8.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 104 VLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLTKGAALS-----GMPPIVRSMGSEVIWGVPVPL 178
Cdd:cd06574 47 WLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILIMIGLYSINLRIMGGPNIPlgtrdTLLGLLLLFGISGTLSIPVVL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 179 IIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYLLL 258
Cdd:cd06574 127 LLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVI 206
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 259 TVLAIVLGGT--DPFGGVGKIIHVFCALLVLQVI-ATGLSLAGVSLHFNLAVWGITLIFA 315
Cdd:cd06574 207 GLAAVIIGGAivGRRTIKASILGVIIGAILYRIAlALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
3-298 |
2.18e-10 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 60.74 E-value: 2.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 3 NKPFLPLDGTSTGLLAICLIATVAF----SLAMPGRFLTENTFLSIAfqlpelgllTFAMFVPMLSGGLNLSIIGTANLT 78
Cdd:PRK11618 2 IKRNLPLMITIGVFVLGYLFCLVQFpgfaSTRVICNLLTDNAFLGIV---------AVGMTFVILSGGIDLSVGSVIAFT 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 79 SLFMAWLLINY-IPVDASIGIQLMwlvlallgaagIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGvYLTKGAALS 157
Cdd:PRK11618 73 GVFLAKLIGDYgWSPLLAFPLVLV-----------MGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVS-FLVSEESIP 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 158 GMPPIVRSMgSEVIWGVP------VPLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSL 231
Cdd:PRK11618 141 INHPFYDTL-SSLAWKLPgggrlsAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGF 219
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 232 LCVLAGlIMMARFNSArmGYGDSYL---LLTVLAIVLGGTDPFGGVGKIIHVFCALLVLQVIATGLSLAG 298
Cdd:PRK11618 220 LATLAG-IVFSLYTSA--GYALAAVgveLDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDG 286
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
103-267 |
2.58e-09 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 57.44 E-value: 2.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 103 LVLALLGAAGIAVLIGVLT-GLMISRV---GAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRsmGSEVIWGVPVP- 177
Cdd:cd06582 51 FWLALLLALLVAALLGVLLeRLVLRPLrgaPLLTLLITFGGLLILLQGLLLIFGGDPRVPPPPLLS--GSVELGGVTIPp 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 178 -----LIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGlIMMARFNSARMGYG 252
Cdd:cd06582 129 yrlfiIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAG-VLLAPITGVSPTMG 207
|
170
....*....|....*
gi 970298435 253 DSYLLLTVLAIVLGG 267
Cdd:cd06582 208 LLLLLKAFAAVVLGG 222
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
100-267 |
3.15e-09 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 56.99 E-value: 3.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 100 LMWLVLALLGAAGIAVLIGVLTGLMISRVGAHP---------ILVTLGSMTIISGIgVYLTKGAALSGMPPIVRsmGSEV 170
Cdd:COG0559 54 ATLLGLPLWLALLLAVLVAALLGVLLERLVIRPlrgapplalLLATIGLSLVLQGL-VLLIFGADPRSFPALLS--GSVE 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 171 IWGVPVP---LIIFIVATVFLALL---LGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGlIMMARF 244
Cdd:COG0559 131 LGGVSIPayrLFIIVVALVLLAALwlfLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAG-VLLAPI 209
|
170 180
....*....|....*....|...
gi 970298435 245 NSARMGYGDSYLLLTVLAIVLGG 267
Cdd:COG0559 210 YSVSPTMGFLLGLKAFAAVVLGG 232
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
103-272 |
2.43e-07 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 50.90 E-value: 2.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 103 LVLALLGAAGIAVLIGVLTGLMISRVGAHPILVTLGSMTIISGIGVYLtkgaalsgmppivrsmgseviwgvpvpLIIFI 182
Cdd:cd06580 50 LPLGLLAAALAGALWALLPALLKAKLGVNEVISGLMLNYIALGLTSYL---------------------------LLLAL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 183 VATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIM-MARFNSARMGYGDSYLLLTVL 261
Cdd:cd06580 103 LLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLvLGVQGRFTEGMSAGYGFIAIA 182
|
170
....*....|.
gi 970298435 262 AIVLGGTDPFG 272
Cdd:cd06580 183 VALLGRWNPLG 193
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
103-318 |
3.47e-05 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 44.74 E-value: 3.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 103 LVLALLGAAGIAVLIGVLTGLMISRVGAHP-ILVTLGSMTIISGIGVY---LTKGAA-LSGMPPIVRSMGSEV-IWGVPV 176
Cdd:cd06581 47 FWLALLAAGLVAALVGLLLGLPALRLRGVYfAIATLAFAEIVRLLALNwssLTGGSNgLSGIPPPLLGGLLLSsPLAFYY 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 177 PLIIFIVATVFLALLLGRTRLGKNIYMCGSNINATWFSGIRTDRIMMAIYAISSLLCVLAGLIMMARFNSARMGYGDSYL 256
Cdd:cd06581 127 LVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGFAL 206
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 970298435 257 LLTVLAIVLggtdpFGGVGKIIHVFCALLVLQVIATGLSLAGVSLHfnLAVWGITLIFALAF 318
Cdd:cd06581 207 SIELLLMVV-----LGGLGSLLGPVLGAALLVLLPELLRSLGPGLR--LLVFGLLLILVVLF 261
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
71-240 |
7.87e-03 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 37.60 E-value: 7.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 71 IIGTANLT--SLFMAWLLINYIPVDA--SIGIQLMWLvlaLLGAAGI-AVLIGVLTGLMISRVGAHPILVTLGSMTIISG 145
Cdd:PRK10740 35 IIGMINFAhgEVYMIGSYVSFMIIAAlmMMGIDTSWL---LVAAGFVgAIVIASAYGWSIERVAYRPVRNSKRLIALISA 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970298435 146 IG--------VYLTKGAALSGMPPIVRS---MGSEVIWGVPVP---LIIFIV---ATVFLALLLGRTRLGKNIYMCGSNI 208
Cdd:PRK10740 112 IGmsiflqnyVSLTEGSRDVALPSLFNGqwvVGHSENFSASITtmqAVIWIVtflAMLALTIFIRYSRMGRACRACAEDL 191
|
170 180 190
....*....|....*....|....*....|..
gi 970298435 209 NATWFSGIRTDRIMMAIYAISSLLCVLAGLIM 240
Cdd:PRK10740 192 KMASLLGINTDRVIALTFVIGAAMAAVAGVLL 223
|
|
|