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Conserved domains on  [gi|944168826|ref|WP_055657828|]
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MULTISPECIES: hypothetical protein [Hungatella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YehR super family cl44134
Uncharacterized lipoprotein YehR, DUF1307 family [Function unknown];
1-42 2.89e-03

Uncharacterized lipoprotein YehR, DUF1307 family [Function unknown];


The actual alignment was detected with superfamily member NF041193:

Pssm-ID: 479601  Cd Length: 190  Bit Score: 36.20  E-value: 2.89e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 944168826   1 MKKKLLIIAAVLVFAlsaAACSSKKEAAAPTTSAKTETSASA 42
Cdd:NF041193   1 MKKILILLGALLLLL---TGCGQKKESKASSKSTTKSSSAST 39
 
Name Accession Description Interval E-value
lipo_SP0191 NF041193
SP0191 family lipoprotein;
1-42 2.89e-03

SP0191 family lipoprotein;


Pssm-ID: 469097  Cd Length: 190  Bit Score: 36.20  E-value: 2.89e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 944168826   1 MKKKLLIIAAVLVFAlsaAACSSKKEAAAPTTSAKTETSASA 42
Cdd:NF041193   1 MKKILILLGALLLLL---TGCGQKKESKASSKSTTKSSSAST 39
OppA COG4166
ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and ...
 1-35 9.68e-03

ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism];


Pssm-ID: 443327 [Multi-domain]  Cd Length: 543  Bit Score: 34.80  E-value: 9.68e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 944168826   1 MKKKLLIIAAVLVFALSAAACSSKKEAAAPTTSAK 35
Cdd:COG4166    1 MKKRKALLLLALALALALAACGSGGKYPAGDKVND 35
 
Name Accession Description Interval E-value
lipo_SP0191 NF041193
SP0191 family lipoprotein;
1-42 2.89e-03

SP0191 family lipoprotein;


Pssm-ID: 469097  Cd Length: 190  Bit Score: 36.20  E-value: 2.89e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 944168826   1 MKKKLLIIAAVLVFAlsaAACSSKKEAAAPTTSAKTETSASA 42
Cdd:NF041193   1 MKKILILLGALLLLL---TGCGQKKESKASSKSTTKSSSAST 39
OppA COG4166
ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and ...
 1-35 9.68e-03

ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism];


Pssm-ID: 443327 [Multi-domain]  Cd Length: 543  Bit Score: 34.80  E-value: 9.68e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 944168826   1 MKKKLLIIAAVLVFALSAAACSSKKEAAAPTTSAK 35
Cdd:COG4166    1 MKKRKALLLLALALALALAACGSGGKYPAGDKVND 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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