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Conserved domains on  [gi|944162820|ref|WP_055651917|]
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hypothetical protein [Hungatella hathewayi]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IspA super family cl43038
Geranylgeranyl pyrophosphate synthase [Coenzyme transport and metabolism]; Geranylgeranyl ...
 788-834 5.26e-03

Geranylgeranyl pyrophosphate synthase [Coenzyme transport and metabolism]; Geranylgeranyl pyrophosphate synthase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


The actual alignment was detected with superfamily member COG0142:

Pssm-ID: 439912 [Multi-domain]  Cd Length: 329  Bit Score: 41.36  E-value: 5.26e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 944162820  788 EIRNMVQKepKTGGLVEAAVE-------ATEAQKKAAEAFGKRTGLSFVLVDDV 834
Cdd:COG0142   167 EYLRVIRL--KTAALFAAALRlgailagADEEQVEALRRYGRNLGLAFQIRDDI 218
 
Name Accession Description Interval E-value
IspA COG0142
Geranylgeranyl pyrophosphate synthase [Coenzyme transport and metabolism]; Geranylgeranyl ...
 788-834 5.26e-03

Geranylgeranyl pyrophosphate synthase [Coenzyme transport and metabolism]; Geranylgeranyl pyrophosphate synthase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 439912 [Multi-domain]  Cd Length: 329  Bit Score: 41.36  E-value: 5.26e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 944162820  788 EIRNMVQKepKTGGLVEAAVE-------ATEAQKKAAEAFGKRTGLSFVLVDDV 834
Cdd:COG0142   167 EYLRVIRL--KTAALFAAALRlgailagADEEQVEALRRYGRNLGLAFQIRDDI 218
 
Name Accession Description Interval E-value
IspA COG0142
Geranylgeranyl pyrophosphate synthase [Coenzyme transport and metabolism]; Geranylgeranyl ...
 788-834 5.26e-03

Geranylgeranyl pyrophosphate synthase [Coenzyme transport and metabolism]; Geranylgeranyl pyrophosphate synthase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 439912 [Multi-domain]  Cd Length: 329  Bit Score: 41.36  E-value: 5.26e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 944162820  788 EIRNMVQKepKTGGLVEAAVE-------ATEAQKKAAEAFGKRTGLSFVLVDDV 834
Cdd:COG0142   167 EYLRVIRL--KTAALFAAALRlgailagADEEQVEALRRYGRNLGLAFQIRDDI 218
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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