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Conserved domains on  [gi|941897650|ref|WP_055228248|]
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S8 family peptidase [Fusicatenibacter saccharivorans]

Protein Classification

S8 family peptidase( domain architecture ID 10165618)

S8 family peptidase is a subtilisin-like serine protease containing a Asp/His/Ser catalytic triad that is not homologous to trypsin

CATH:  3.40.50.200
EC:  3.4.-.-
Gene Ontology:  GO:0008236|GO:0006508
MEROPS:  S8
PubMed:  8439290|9070434
SCOP:  2000207

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidases_S8_CspA-like cd07478
Peptidase S8 family domain in CspA-like proteins; GSP (germination-specific protease) converts ...
95-552 0e+00

Peptidase S8 family domain in CspA-like proteins; GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


:

Pssm-ID: 173804 [Multi-domain]  Cd Length: 455  Bit Score: 534.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  95 YTGKNVIFGFLDTGIDYRHPAFLHANGQSRILAVWDQTDRTGTPPAQFPYGSLYTKSDLDAALESGDPLSLVPVTDPDGH 174
Cdd:cd07478    1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAALASDNPYDIVPSRDENGH 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 175 GTYVAGVAGGTPDASAGFLGAAPEADFAVVKLKPAKQNLKDFYlvsSNAPVFEEDDLLSAMHFLNETAAAEGKPLVLCLA 254
Cdd:cd07478   81 GTHVAGIAAGNGDNNPDFKGVAPEAELIVVKLKQAKKYLREFY---EDVPFYQETDIMLAIKYLYDKALELNKPLVINIS 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 255 LGTNQGSHSGTLPVSLTLARYGNTPGVIPVCATGNEGNAAHHYYGSVSETYTPKNVEFLVSEGNRGFTLELWGQAPQLFS 334
Cdd:cd07478  158 LGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEKGFNLEIWGDFPDRFS 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 335 VGFRSPGGETIPRIPVSLNQEQRITFVLERTVIYVNYEVVQATTGSQLILIRMLDPTPGIWTLQVYRAFPSPPDFHIWLP 414
Cdd:cd07478  238 VSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKPGIWKIRLTGVSITDGRFDAWLP 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 415 ITGFSTSDVTFLEPDPYTTLTTPSATVPVLSPSTYQAANNGFSPESGRGFTRLGEIKPDFAAPGVSVTGPGPAGSYVSFS 494
Cdd:cd07478  318 SRGLLSENTRFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTRDGRIKPDIAAPGVNILTASPGGGYTTRS 397
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 941897650 495 GSSASAAITSGAAALFLQWGIQRTPARYFTAQEVKNYLIRGADRTDTITYPSREWGYG 552
Cdd:cd07478  398 GTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGDEYPNPEWGYG 455
 
Name Accession Description Interval E-value
Peptidases_S8_CspA-like cd07478
Peptidase S8 family domain in CspA-like proteins; GSP (germination-specific protease) converts ...
95-552 0e+00

Peptidase S8 family domain in CspA-like proteins; GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173804 [Multi-domain]  Cd Length: 455  Bit Score: 534.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  95 YTGKNVIFGFLDTGIDYRHPAFLHANGQSRILAVWDQTDRTGTPPAQFPYGSLYTKSDLDAALESGDPLSLVPVTDPDGH 174
Cdd:cd07478    1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAALASDNPYDIVPSRDENGH 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 175 GTYVAGVAGGTPDASAGFLGAAPEADFAVVKLKPAKQNLKDFYlvsSNAPVFEEDDLLSAMHFLNETAAAEGKPLVLCLA 254
Cdd:cd07478   81 GTHVAGIAAGNGDNNPDFKGVAPEAELIVVKLKQAKKYLREFY---EDVPFYQETDIMLAIKYLYDKALELNKPLVINIS 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 255 LGTNQGSHSGTLPVSLTLARYGNTPGVIPVCATGNEGNAAHHYYGSVSETYTPKNVEFLVSEGNRGFTLELWGQAPQLFS 334
Cdd:cd07478  158 LGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEKGFNLEIWGDFPDRFS 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 335 VGFRSPGGETIPRIPVSLNQEQRITFVLERTVIYVNYEVVQATTGSQLILIRMLDPTPGIWTLQVYRAFPSPPDFHIWLP 414
Cdd:cd07478  238 VSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKPGIWKIRLTGVSITDGRFDAWLP 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 415 ITGFSTSDVTFLEPDPYTTLTTPSATVPVLSPSTYQAANNGFSPESGRGFTRLGEIKPDFAAPGVSVTGPGPAGSYVSFS 494
Cdd:cd07478  318 SRGLLSENTRFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTRDGRIKPDIAAPGVNILTASPGGGYTTRS 397
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 941897650 495 GSSASAAITSGAAALFLQWGIQRTPARYFTAQEVKNYLIRGADRTDTITYPSREWGYG 552
Cdd:cd07478  398 GTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGDEYPNPEWGYG 455
CspC_non_triad NF040808
bile acid germinant receptor pseudoprotease CspC; Members of this family share homology with ...
6-556 7.46e-64

bile acid germinant receptor pseudoprotease CspC; Members of this family share homology with MEROPS S8 family serine proteases, but with substitutions that replace key catalytic residues, as seen in CD2246 from Clostridium difficile. The related germination-specific protease CspC of Clostridium perfringens, outside the scope of this model, retains its serine protease catalytic triad residues. Adjacent to CD2246 is the fusion protein CD2247, CspBA, in which the CspB region retains its subtilisin-like catalytic triad while the CspA, like CspC, has lost it.


Pssm-ID: 468749 [Multi-domain]  Cd Length: 556  Bit Score: 218.92  E-value: 7.46e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650   6 IIYSNDYINILIQNYVAQseryqmlfpessaLLTLNPQYSVLFLErSLLPENLFGAVPFTGLPKLFTPLSTL-------- 77
Cdd:NF040808   6 IIYQGNIEQSLQENGITN-------------FMVLNNQLAVIYVP-ADFDENILNNINQVAWWEESEPMSSLinitnnll 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  78 ----SLEVSGIVQTQNLYGGGYTGKNVIFGFLDTGIDYRHPAFLHANGQSRILAVWDQTDRTGTPPAQFPYGSLYTKSDL 153
Cdd:NF040808  72 qgetVRTASGIAYIYNNPYNNLSGRGILIAIIDSGIDYLHPDFINEDGTSKIVSIWDQESNKKPPPEGMIFGSEFTREEI 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 154 DAAL-ESGDPLSlvpvTDPDGHGTYVAGVAGGTPDASAGFLGAAPEADFAVVKLKPAKQNlkdFYLVSSNapvFEEDDLL 232
Cdd:NF040808 152 NEAIkNNNGDLS----RDEIGTGTIAAGILVGQGKINSNYKGIAPNAELIVVKLREYIDT---FKKGRIN---YQSTDFL 221
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 233 SAMHFLNETAAAEGKPLVLCLALGTNQGSHSGT--LPVSLTLARygntPGVIPVCATGNEGNAAHHYYGSVSETYTPKNV 310
Cdd:NF040808 222 AAISYVINVAKKENKPIIINFTIGTTSGSVISTsiLDTFEELSQ----SGIVLVSGAGNQGNTDIHYSGSFNNNGEYQDI 297
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 311 EFLVSEGnRGFTLELWGQAPQLFSVGFRSPGGETIPRIPVSL-NQEQRITFVLERTVIYVNYEVVQATTGSQLILIRMLD 389
Cdd:NF040808 298 IIQVGDD-KNLDIIINGYGPDKIGIAIISPSGEISPTISYAPdNYIYAGKFNLENTTYSMRYIYPWISSGKEQLKIKLKD 376
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 390 PTPGIWTLQVYRAFPSPPDFHIWLPITGFSTSDVTFLEPDPYTTLTTPSATVPVLSPSTYQAANNGFSPESGRGFTRLGE 469
Cdd:NF040808 377 IKPGIWTLRLTPEFIINGEYNIYLPNKNLISDNTRFLDPDSNATITRYGLLDNVITVGTYNTKTNSMWIGSSKGPAGGRQ 456
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 470 IKPDFAAPGVSVTGPGPAGSYVSFSGSSASAAITSGAAALFLQWGIQRT--PARYFTAQEVKNYLIRGADRTDTITYPSR 547
Cdd:NF040808 457 IKPDIVAPGVDIISTYLNNTYNTGTGTGVSSSIVCGVLALIMEYIIKQTefPRLSLYTEPLKTYLMLGATKKEIYTYPNI 536

                 ....*....
gi 941897650 548 EWGYGRLQL 556
Cdd:NF040808 537 SQGYGILNL 545
germ_prot_CspBA NF040809
bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in ...
1-563 1.80e-63

bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in Clostridium difficile, is translated as a fusion protein, but cleaved into separate homologous CspB and CspA proteins during spore formation. CspB is a protease, required to active SleC by cleaving it in order to trigger germination. CspA, like the bile salt germinant receptor CspC (encoded by the adjacent gene), has lost the catalytic residues necessary for subtilisin-like serine protease activity.


Pssm-ID: 468750 [Multi-domain]  Cd Length: 1099  Bit Score: 225.43  E-value: 1.80e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650    1 MDLTDIIYSNDYINILIQNYVAQSERYQMLFPESSALLTLNPQYSVLF---LERSLLPE--NLFGAVPFTGLPKLfTPLS 75
Cdd:NF040809  542 LQIKNNLINENRINGAVLFHNPEFEEELKNFGLEYNFFKLSENLGVLFitdTDISQIGEilKIPSVIRIESLVRM-APLG 620
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650   76 TLSLEVSGIVQTQNLYGGGY---------TGKNVIFGFLDTGIDYRHPAFLHANGQSRILAVWDQTdRTGTPPAQFPYGS 146
Cdd:NF040809  621 QISQGTSGGVVATEDIGVNFfknnpninlTGRGVLIAIADTGIDYLHPDFIYPDGTSKILYLWDQT-KEGNPPEGFYIGT 699
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  147 LYTKSDLDAALESGDP-LSlvpvTDPDGHGTYVAGVAGGTPDASAGFLGAAPEADFAVVKLKpakqNLKDFYlvsSNAPv 225
Cdd:NF040809  700 EYTREDINRAIAENDSsLS----QDEVGHGTMLSGICAGLGNVNSEYAGVAEDAELIVIKLG----KIDGFY---NNAM- 767
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  226 feeddLLSAMHFLNETAAAEGKPLVLCLALGTNQ--GSHSGTLPVSLTLARygntpGVIPVCATGNEGNAAHHYYGSVSE 303
Cdd:NF040809  768 -----LYAATQYAYKKARELNRPLIINISVGSNSlaGFTNRTNAEKAYFTR-----GLCIVAGAGNEGNTQTHASGKISA 837
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  304 TYTPKNVEFLVSEGNRGFTLELWGQAPQLFSVGFRSPGGETIPRIPVSLNQEQRITFVLERTVIYVNYEVVQATTGSQLI 383
Cdd:NF040809  838 VGESVDVELEIEEDEENLQIEIWMDRPDRINVIIISPTGEESKDVGLSNYDEVSGIFDLENTEYLIRYSYPTSYSGQQFT 917
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  384 LIRMLDPTPGIWTLQVYRAFPSPPDFHIWLPITGFSTSDVTFLEPDPYTTLTTPSATVPVLSPSTYQAANNGFSPESGRG 463
Cdd:NF040809  918 NVNLKNAKKGIWKIRLTGVYINSGIYNMYLPNRVFLKPGTKFRESDPFYTINYPAVQDDIITVGAYDTINNSIWPTSSRG 997
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  464 FTRLGEIKPDFAAPGVSVTGPGPAGSYVSFSGSSASAAITSGAAALFLQWGIQ--RTPARYFTaQEVKNYLIRGADRTDT 541
Cdd:NF040809  998 PTIRNIQKPDIVAPGVNIIAPYPGNTYATITGTSAAAAHVSGVAALYLQYTLVerRYPNQAFT-QKIKTFMQAGATRSTN 1076
                         570       580
                  ....*....|....*....|..
gi 941897650  542 ITYPSREWGYGRLQLYQSFTSL 563
Cdd:NF040809 1077 IEYPNTTSGYGLLNIRGMFDQL 1098
germ_prot_CspBA NF040809
bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in ...
78-556 1.47e-46

bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in Clostridium difficile, is translated as a fusion protein, but cleaved into separate homologous CspB and CspA proteins during spore formation. CspB is a protease, required to active SleC by cleaving it in order to trigger germination. CspA, like the bile salt germinant receptor CspC (encoded by the adjacent gene), has lost the catalytic residues necessary for subtilisin-like serine protease activity.


Pssm-ID: 468750 [Multi-domain]  Cd Length: 1099  Bit Score: 175.74  E-value: 1.47e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650   78 SLEVSGIVQTQNLygGGYTGKNVIFGFLDTGIDYRHPAFLHANGQSRILAVWDQTDRtGTPPAQFPYGSLYTKSDLDAAL 157
Cdd:NF040809   68 SFSSTGITSFKNR--TGLTGKGTILGIIDSGIDYTLPIFKDSDGNSKILYYWDQSID-GNPPEGFREGTLYTNEDINEAI 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  158 ESGdplSLVPVTDPDGHGTYVAGVAGGTpdasagflgaAPEADFAVVKLKPAKQnlkDFYLVSSnapvfeedDLLSAMHF 237
Cdd:NF040809  145 NGN---KYIPISTTSMHGTHVAGIAASI----------ANEASIIVVRVGRRQT---DTFSKST--------EFMRAIKF 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  238 LNETAAAEGKPLVLCLALGTNQGSHSGTlpvSLtLARY---------GNTpgvipVCATGNEGNAAHHYYGSVSETYTpK 308
Cdd:NF040809  201 ILDKALELKMPVAINISYGSNEGSHRGL---SL-FEQYiddmclfwkNNI-----VVAAGNNADKGGHKRIQLKNDES-Q 270
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  309 NVEFLVSEGNRGFTLELWGQAPQLFSVGFRSPGGETIPriPVSLNQEQRITFVLERTVIYVNYEVVQATTgSQLILIRM- 387
Cdd:NF040809  271 EVEFVVGENEKILNINIWPNFVDNFSVHLVNPSNNQTQ--EISQDSGEINNNLGGTRINGVFYEIAPYSL-SRRVTIQLs 347
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  388 --LDPTPGIWTLQVyrafpSPPDF-----HIWLPITGFSTSDVTFLEPDPYTTLTTPSATVPVLSPSTYQAANNGFSPES 460
Cdd:NF040809  348 snTQITPGIWTIVF-----TPIDIvdgniDIYLPTSEGLSKDTRFLEPSKILTVTVPGTASRVITVGSFNSRTDVVSVFS 422
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  461 GRGFTRLGEIKPDFAAPGVSVTGPGPAGSYVSFSGSSASAAITSGAAALFLQWGIQRTPARYFTAQEVKNYLIRGADRTD 540
Cdd:NF040809  423 GEGDIENGIYKPDLLAPGENIVSYLPGGTTGALTGTSMATPHVTGVCSLLMQWGIVEGNDLFLYSQKLKALLLQNARRSP 502
                         490
                  ....*....|....*.
gi 941897650  541 TITYPSREWGYGRLQL 556
Cdd:NF040809  503 NRTYPNNSSGYGFLNL 518
AprE COG1404
Serine protease, subtilisin family [Posttranslational modification, protein turnover, ...
94-306 7.16e-19

Serine protease, subtilisin family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441014 [Multi-domain]  Cd Length: 456  Bit Score: 89.39  E-value: 7.16e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  94 GYTGKNVIFGFLDTGIDYRHPAFlhangQSRILAVWDQTDRTGTPpaqfpygslytksdldaalesgdplslvpvTDPDG 173
Cdd:COG1404  105 GLTGAGVTVAVIDTGVDADHPDL-----AGRVVGGYDFVDGDGDP------------------------------SDDNG 149
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 174 HGTYVAGVAGGTPDASAGFLGAAPEADFAVVKlkpakqnlkdfylVSSNAPVFEEDDLLSAMHFlnetaAAEGKPLVLCL 253
Cdd:COG1404  150 HGTHVAGIIAANGNNGGGVAGVAPGAKLLPVR-------------VLDDNGSGTTSDIAAAIDW-----AADNGADVINL 211
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 941897650 254 ALGTNQGSHSGTLpvsLTLARYGNTPGVIPVCATGNEG--NAAHHYYGSVSETYT 306
Cdd:COG1404  212 SLGGPADGYSDAL---AAAVDYAVDKGVLVVAAAGNSGsdDATVSYPAAYPNVIA 263
T7SS_mycosin TIGR03921
type VII secretion-associated serine protease mycosin; Members of this family are ...
169-296 1.29e-09

type VII secretion-associated serine protease mycosin; Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]


Pssm-ID: 274856 [Multi-domain]  Cd Length: 350  Bit Score: 60.03  E-value: 1.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  169 TDPDGHGTYVAGVAGGTPDASAGFLGAAPEAdfavvKLKPAKQNLKDFYLVSSNAPVFEEDDLLSAMHFlnetaAAEGKP 248
Cdd:TIGR03921  48 DDCDGHGTLVAGIIAGRPGEGDGFSGVAPDA-----RILPIRQTSAAFEPDEGTSGVGDLGTLAKAIRR-----AADLGA 117
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 941897650  249 LVLCLALGTNQGSHSGTLPVSLTLA-RYGNTPGVIPVCATGNEGNAAHH 296
Cdd:TIGR03921 118 DVINISLVACLPAGSGADDPELGAAvRYALDKGVVVVAAAGNTGGDGQK 166
Peptidase_S8 pfam00082
Subtilase family; Subtilases are a family of serine proteases. They appear to have ...
97-292 4.02e-09

Subtilase family; Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567.


Pssm-ID: 395035 [Multi-domain]  Cd Length: 287  Bit Score: 57.85  E-value: 4.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650   97 GKNVIFGFLDTGIDYRHPAFlhangQSRILAVWDqtdrtgtPPAQFPYgslytksdldaALESGDPLSLVPVTDPDGHGT 176
Cdd:pfam00082   1 GKGVVVAVLDTGIDPNHPDL-----SGNLDNDPS-------DDPEASV-----------DFNNEWDDPRDDIDDKNGHGT 57
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  177 YVAGVAGGTPDASAGFLGAAPEADFAVVKLkPAKQNLKDFylvssnapvfeedDLLSAMhflneTAAAEGKPLVLCLALG 256
Cdd:pfam00082  58 HVAGIIAAGGNNSIGVSGVAPGAKILGVRV-FGDGGGTDA-------------ITAQAI-----SWAIPQGADVINMSWG 118
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 941897650  257 TnQGSHSGTLPVSLTLARYG--NTPGVIPVCATGNEGN 292
Cdd:pfam00082 119 S-DKTDGGPGSWSAAVDQLGgaEAAGSLFVWAAGNGSP 155
 
Name Accession Description Interval E-value
Peptidases_S8_CspA-like cd07478
Peptidase S8 family domain in CspA-like proteins; GSP (germination-specific protease) converts ...
95-552 0e+00

Peptidase S8 family domain in CspA-like proteins; GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173804 [Multi-domain]  Cd Length: 455  Bit Score: 534.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  95 YTGKNVIFGFLDTGIDYRHPAFLHANGQSRILAVWDQTDRTGTPPAQFPYGSLYTKSDLDAALESGDPLSLVPVTDPDGH 174
Cdd:cd07478    1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAALASDNPYDIVPSRDENGH 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 175 GTYVAGVAGGTPDASAGFLGAAPEADFAVVKLKPAKQNLKDFYlvsSNAPVFEEDDLLSAMHFLNETAAAEGKPLVLCLA 254
Cdd:cd07478   81 GTHVAGIAAGNGDNNPDFKGVAPEAELIVVKLKQAKKYLREFY---EDVPFYQETDIMLAIKYLYDKALELNKPLVINIS 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 255 LGTNQGSHSGTLPVSLTLARYGNTPGVIPVCATGNEGNAAHHYYGSVSETYTPKNVEFLVSEGNRGFTLELWGQAPQLFS 334
Cdd:cd07478  158 LGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEKGFNLEIWGDFPDRFS 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 335 VGFRSPGGETIPRIPVSLNQEQRITFVLERTVIYVNYEVVQATTGSQLILIRMLDPTPGIWTLQVYRAFPSPPDFHIWLP 414
Cdd:cd07478  238 VSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKPGIWKIRLTGVSITDGRFDAWLP 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 415 ITGFSTSDVTFLEPDPYTTLTTPSATVPVLSPSTYQAANNGFSPESGRGFTRLGEIKPDFAAPGVSVTGPGPAGSYVSFS 494
Cdd:cd07478  318 SRGLLSENTRFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTRDGRIKPDIAAPGVNILTASPGGGYTTRS 397
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 941897650 495 GSSASAAITSGAAALFLQWGIQRTPARYFTAQEVKNYLIRGADRTDTITYPSREWGYG 552
Cdd:cd07478  398 GTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGDEYPNPEWGYG 455
CspC_non_triad NF040808
bile acid germinant receptor pseudoprotease CspC; Members of this family share homology with ...
6-556 7.46e-64

bile acid germinant receptor pseudoprotease CspC; Members of this family share homology with MEROPS S8 family serine proteases, but with substitutions that replace key catalytic residues, as seen in CD2246 from Clostridium difficile. The related germination-specific protease CspC of Clostridium perfringens, outside the scope of this model, retains its serine protease catalytic triad residues. Adjacent to CD2246 is the fusion protein CD2247, CspBA, in which the CspB region retains its subtilisin-like catalytic triad while the CspA, like CspC, has lost it.


Pssm-ID: 468749 [Multi-domain]  Cd Length: 556  Bit Score: 218.92  E-value: 7.46e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650   6 IIYSNDYINILIQNYVAQseryqmlfpessaLLTLNPQYSVLFLErSLLPENLFGAVPFTGLPKLFTPLSTL-------- 77
Cdd:NF040808   6 IIYQGNIEQSLQENGITN-------------FMVLNNQLAVIYVP-ADFDENILNNINQVAWWEESEPMSSLinitnnll 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  78 ----SLEVSGIVQTQNLYGGGYTGKNVIFGFLDTGIDYRHPAFLHANGQSRILAVWDQTDRTGTPPAQFPYGSLYTKSDL 153
Cdd:NF040808  72 qgetVRTASGIAYIYNNPYNNLSGRGILIAIIDSGIDYLHPDFINEDGTSKIVSIWDQESNKKPPPEGMIFGSEFTREEI 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 154 DAAL-ESGDPLSlvpvTDPDGHGTYVAGVAGGTPDASAGFLGAAPEADFAVVKLKPAKQNlkdFYLVSSNapvFEEDDLL 232
Cdd:NF040808 152 NEAIkNNNGDLS----RDEIGTGTIAAGILVGQGKINSNYKGIAPNAELIVVKLREYIDT---FKKGRIN---YQSTDFL 221
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 233 SAMHFLNETAAAEGKPLVLCLALGTNQGSHSGT--LPVSLTLARygntPGVIPVCATGNEGNAAHHYYGSVSETYTPKNV 310
Cdd:NF040808 222 AAISYVINVAKKENKPIIINFTIGTTSGSVISTsiLDTFEELSQ----SGIVLVSGAGNQGNTDIHYSGSFNNNGEYQDI 297
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 311 EFLVSEGnRGFTLELWGQAPQLFSVGFRSPGGETIPRIPVSL-NQEQRITFVLERTVIYVNYEVVQATTGSQLILIRMLD 389
Cdd:NF040808 298 IIQVGDD-KNLDIIINGYGPDKIGIAIISPSGEISPTISYAPdNYIYAGKFNLENTTYSMRYIYPWISSGKEQLKIKLKD 376
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 390 PTPGIWTLQVYRAFPSPPDFHIWLPITGFSTSDVTFLEPDPYTTLTTPSATVPVLSPSTYQAANNGFSPESGRGFTRLGE 469
Cdd:NF040808 377 IKPGIWTLRLTPEFIINGEYNIYLPNKNLISDNTRFLDPDSNATITRYGLLDNVITVGTYNTKTNSMWIGSSKGPAGGRQ 456
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 470 IKPDFAAPGVSVTGPGPAGSYVSFSGSSASAAITSGAAALFLQWGIQRT--PARYFTAQEVKNYLIRGADRTDTITYPSR 547
Cdd:NF040808 457 IKPDIVAPGVDIISTYLNNTYNTGTGTGVSSSIVCGVLALIMEYIIKQTefPRLSLYTEPLKTYLMLGATKKEIYTYPNI 536

                 ....*....
gi 941897650 548 EWGYGRLQL 556
Cdd:NF040808 537 SQGYGILNL 545
germ_prot_CspBA NF040809
bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in ...
1-563 1.80e-63

bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in Clostridium difficile, is translated as a fusion protein, but cleaved into separate homologous CspB and CspA proteins during spore formation. CspB is a protease, required to active SleC by cleaving it in order to trigger germination. CspA, like the bile salt germinant receptor CspC (encoded by the adjacent gene), has lost the catalytic residues necessary for subtilisin-like serine protease activity.


Pssm-ID: 468750 [Multi-domain]  Cd Length: 1099  Bit Score: 225.43  E-value: 1.80e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650    1 MDLTDIIYSNDYINILIQNYVAQSERYQMLFPESSALLTLNPQYSVLF---LERSLLPE--NLFGAVPFTGLPKLfTPLS 75
Cdd:NF040809  542 LQIKNNLINENRINGAVLFHNPEFEEELKNFGLEYNFFKLSENLGVLFitdTDISQIGEilKIPSVIRIESLVRM-APLG 620
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650   76 TLSLEVSGIVQTQNLYGGGY---------TGKNVIFGFLDTGIDYRHPAFLHANGQSRILAVWDQTdRTGTPPAQFPYGS 146
Cdd:NF040809  621 QISQGTSGGVVATEDIGVNFfknnpninlTGRGVLIAIADTGIDYLHPDFIYPDGTSKILYLWDQT-KEGNPPEGFYIGT 699
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  147 LYTKSDLDAALESGDP-LSlvpvTDPDGHGTYVAGVAGGTPDASAGFLGAAPEADFAVVKLKpakqNLKDFYlvsSNAPv 225
Cdd:NF040809  700 EYTREDINRAIAENDSsLS----QDEVGHGTMLSGICAGLGNVNSEYAGVAEDAELIVIKLG----KIDGFY---NNAM- 767
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  226 feeddLLSAMHFLNETAAAEGKPLVLCLALGTNQ--GSHSGTLPVSLTLARygntpGVIPVCATGNEGNAAHHYYGSVSE 303
Cdd:NF040809  768 -----LYAATQYAYKKARELNRPLIINISVGSNSlaGFTNRTNAEKAYFTR-----GLCIVAGAGNEGNTQTHASGKISA 837
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  304 TYTPKNVEFLVSEGNRGFTLELWGQAPQLFSVGFRSPGGETIPRIPVSLNQEQRITFVLERTVIYVNYEVVQATTGSQLI 383
Cdd:NF040809  838 VGESVDVELEIEEDEENLQIEIWMDRPDRINVIIISPTGEESKDVGLSNYDEVSGIFDLENTEYLIRYSYPTSYSGQQFT 917
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  384 LIRMLDPTPGIWTLQVYRAFPSPPDFHIWLPITGFSTSDVTFLEPDPYTTLTTPSATVPVLSPSTYQAANNGFSPESGRG 463
Cdd:NF040809  918 NVNLKNAKKGIWKIRLTGVYINSGIYNMYLPNRVFLKPGTKFRESDPFYTINYPAVQDDIITVGAYDTINNSIWPTSSRG 997
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  464 FTRLGEIKPDFAAPGVSVTGPGPAGSYVSFSGSSASAAITSGAAALFLQWGIQ--RTPARYFTaQEVKNYLIRGADRTDT 541
Cdd:NF040809  998 PTIRNIQKPDIVAPGVNIIAPYPGNTYATITGTSAAAAHVSGVAALYLQYTLVerRYPNQAFT-QKIKTFMQAGATRSTN 1076
                         570       580
                  ....*....|....*....|..
gi 941897650  542 ITYPSREWGYGRLQLYQSFTSL 563
Cdd:NF040809 1077 IEYPNTTSGYGLLNIRGMFDQL 1098
germ_prot_CspBA NF040809
bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in ...
78-556 1.47e-46

bifunctional germination protease/germinant receptor pseudoprotease CspBA; CspBA, as found in Clostridium difficile, is translated as a fusion protein, but cleaved into separate homologous CspB and CspA proteins during spore formation. CspB is a protease, required to active SleC by cleaving it in order to trigger germination. CspA, like the bile salt germinant receptor CspC (encoded by the adjacent gene), has lost the catalytic residues necessary for subtilisin-like serine protease activity.


Pssm-ID: 468750 [Multi-domain]  Cd Length: 1099  Bit Score: 175.74  E-value: 1.47e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650   78 SLEVSGIVQTQNLygGGYTGKNVIFGFLDTGIDYRHPAFLHANGQSRILAVWDQTDRtGTPPAQFPYGSLYTKSDLDAAL 157
Cdd:NF040809   68 SFSSTGITSFKNR--TGLTGKGTILGIIDSGIDYTLPIFKDSDGNSKILYYWDQSID-GNPPEGFREGTLYTNEDINEAI 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  158 ESGdplSLVPVTDPDGHGTYVAGVAGGTpdasagflgaAPEADFAVVKLKPAKQnlkDFYLVSSnapvfeedDLLSAMHF 237
Cdd:NF040809  145 NGN---KYIPISTTSMHGTHVAGIAASI----------ANEASIIVVRVGRRQT---DTFSKST--------EFMRAIKF 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  238 LNETAAAEGKPLVLCLALGTNQGSHSGTlpvSLtLARY---------GNTpgvipVCATGNEGNAAHHYYGSVSETYTpK 308
Cdd:NF040809  201 ILDKALELKMPVAINISYGSNEGSHRGL---SL-FEQYiddmclfwkNNI-----VVAAGNNADKGGHKRIQLKNDES-Q 270
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  309 NVEFLVSEGNRGFTLELWGQAPQLFSVGFRSPGGETIPriPVSLNQEQRITFVLERTVIYVNYEVVQATTgSQLILIRM- 387
Cdd:NF040809  271 EVEFVVGENEKILNINIWPNFVDNFSVHLVNPSNNQTQ--EISQDSGEINNNLGGTRINGVFYEIAPYSL-SRRVTIQLs 347
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  388 --LDPTPGIWTLQVyrafpSPPDF-----HIWLPITGFSTSDVTFLEPDPYTTLTTPSATVPVLSPSTYQAANNGFSPES 460
Cdd:NF040809  348 snTQITPGIWTIVF-----TPIDIvdgniDIYLPTSEGLSKDTRFLEPSKILTVTVPGTASRVITVGSFNSRTDVVSVFS 422
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  461 GRGFTRLGEIKPDFAAPGVSVTGPGPAGSYVSFSGSSASAAITSGAAALFLQWGIQRTPARYFTAQEVKNYLIRGADRTD 540
Cdd:NF040809  423 GEGDIENGIYKPDLLAPGENIVSYLPGGTTGALTGTSMATPHVTGVCSLLMQWGIVEGNDLFLYSQKLKALLLQNARRSP 502
                         490
                  ....*....|....*.
gi 941897650  541 TITYPSREWGYGRLQL 556
Cdd:NF040809  503 NRTYPNNSSGYGFLNL 518
AprE COG1404
Serine protease, subtilisin family [Posttranslational modification, protein turnover, ...
94-306 7.16e-19

Serine protease, subtilisin family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441014 [Multi-domain]  Cd Length: 456  Bit Score: 89.39  E-value: 7.16e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  94 GYTGKNVIFGFLDTGIDYRHPAFlhangQSRILAVWDQTDRTGTPpaqfpygslytksdldaalesgdplslvpvTDPDG 173
Cdd:COG1404  105 GLTGAGVTVAVIDTGVDADHPDL-----AGRVVGGYDFVDGDGDP------------------------------SDDNG 149
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 174 HGTYVAGVAGGTPDASAGFLGAAPEADFAVVKlkpakqnlkdfylVSSNAPVFEEDDLLSAMHFlnetaAAEGKPLVLCL 253
Cdd:COG1404  150 HGTHVAGIIAANGNNGGGVAGVAPGAKLLPVR-------------VLDDNGSGTTSDIAAAIDW-----AADNGADVINL 211
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 941897650 254 ALGTNQGSHSGTLpvsLTLARYGNTPGVIPVCATGNEG--NAAHHYYGSVSETYT 306
Cdd:COG1404  212 SLGGPADGYSDAL---AAAVDYAVDKGVLVVAAAGNSGsdDATVSYPAAYPNVIA 263
Peptidases_S8_S53 cd00306
Peptidase domain in the S8 and S53 families; Members of the peptidases S8 (subtilisin and ...
103-300 3.12e-11

Peptidase domain in the S8 and S53 families; Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


Pssm-ID: 173787 [Multi-domain]  Cd Length: 241  Bit Score: 63.76  E-value: 3.12e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 103 GFLDTGIDYRHPAFLHANGQSRILAVWDQTDRTGTPPaqfpygslytksdldaalesgdplslvpvTDPDGHGTYVAGVA 182
Cdd:cd00306    4 AVIDTGVDPDHPDLDGLFGGGDGGNDDDDNENGPTDP-----------------------------DDGNGHGTHVAGII 54
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 183 GGTPDASAGfLGAAPEADFAVVKlkpakqnlkdfylVSSNAPVFEEDDLLSAMhflnETAAAEGKPLVLCLALGTnqGSH 262
Cdd:cd00306   55 AASANNGGG-VGVAPGAKLIPVK-------------VLDGDGSGSSSDIAAAI----DYAAADQGADVINLSLGG--PGS 114
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 941897650 263 SGTLPVSLTLARYGNTPGVIPVCATGNEGNAAHHYYGS 300
Cdd:cd00306  115 PPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGY 152
Peptidases_S8_5 cd07489
Peptidase S8 family domain, uncharacterized subfamily 5; gap in seq This family is a member of ...
94-199 1.97e-10

Peptidase S8 family domain, uncharacterized subfamily 5; gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173814 [Multi-domain]  Cd Length: 312  Bit Score: 62.24  E-value: 1.97e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  94 GYTGKNVIFGFLDTGIDYRHPA--------FLHANGqsrILAVWDQTDRTGTPpaqfpygslytksdldaalesgdplsl 165
Cdd:cd07489    9 GITGKGVKVAVVDTGIDYTHPAlggcfgpgCKVAGG---YDFVGDDYDGTNPP--------------------------- 58
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 941897650 166 VPVTDPD---GHGTYVAGVAGGTPDASaGFLGAAPEA 199
Cdd:cd07489   59 VPDDDPMdcqGHGTHVAGIIAANPNAY-GFTGVAPEA 94
Peptidases_S8_subtilisin_Vpr-like cd07474
Peptidase S8 family domain in Vpr-like proteins; The maturation of the peptide antibiotic ...
97-294 2.54e-10

Peptidase S8 family domain in Vpr-like proteins; The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173800 [Multi-domain]  Cd Length: 295  Bit Score: 61.58  E-value: 2.54e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  97 GKNVIFGFLDTGIDYRHPAFLHANGQS-RILAVWDQTDRTGTPPAQFPYGslytksdldaalesgDPLSLVPVTDPDGHG 175
Cdd:cd07474    1 GKGVKVAVIDTGIDYTHPDLGGPGFPNdKVKGGYDFVDDDYDPMDTRPYP---------------SPLGDASAGDATGHG 65
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 176 TYVAGVAGGTPDASAGFLGAAPEADFAVVKlkpakqnlkdfylVSSNAPVFEEDDLLSAMhflnETAAAEGKPlVLCLAL 255
Cdd:cd07474   66 THVAGIIAGNGVNVGTIKGVAPKADLYAYK-------------VLGPGGSGTTDVIIAAI----EQAVDDGMD-VINLSL 127
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 941897650 256 GTNQGSHsgTLPVSLTLARyGNTPGVIPVCATGNEGNAA 294
Cdd:cd07474  128 GSSVNGP--DDPDAIAINN-AVKAGVVVVAAAGNSGPAP 163
Peptidases_S8_C5a_Peptidase cd07475
Peptidase S8 family domain in Streptococcal C5a peptidases; Streptococcal C5a peptidase (SCP), ...
93-310 3.38e-10

Peptidase S8 family domain in Streptococcal C5a peptidases; Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173801 [Multi-domain]  Cd Length: 346  Bit Score: 61.90  E-value: 3.38e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  93 GGYTGKNVIFGFLDTGIDYRHPAFLHANG------QSRILAVWDQTDRTGTP-PAQFPYGSLYTKSDLDAalesgdplsl 165
Cdd:cd07475    6 GGYKGEGMVVAVIDSGVDPTHDAFRLDDDskakysEEFEAKKKKAGIGYGKYyNEKVPFAYNYADNNDDI---------- 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 166 VPVTDPDGHGTYVAGVAGG---TPDASAGFLGAAPEAdfavvklkpakQNLkdFYLVSSNAPVFEE--DDLLSAMhflnE 240
Cdd:cd07475   76 LDEDDGSSHGMHVAGIVAGngdEEDNGEGIKGVAPEA-----------QLL--AMKVFSNPEGGSTydDAYAKAI----E 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 241 TAAAEGkPLVLCLALGTNQGSHSGTLPVSLTLArYGNTPGVIPVCATGNEGNAAHHY----------YGSVSETYTPKNV 310
Cdd:cd07475  139 DAVKLG-ADVINMSLGSTAGFVDLDDPEQQAIK-RAREAGVVVVVAAGNDGNSGSGTskplatnnpdTGTVGSPATADDV 216
Peptidases_S8_1 cd07487
Peptidase S8 family domain, uncharacterized subfamily 1; This family is a member of the ...
97-205 3.40e-10

Peptidase S8 family domain, uncharacterized subfamily 1; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173812 [Multi-domain]  Cd Length: 264  Bit Score: 61.06  E-value: 3.40e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  97 GKNVIFGFLDTGIDYRHPAFlhangQSRILAVWDQTDRTGTPPAqfPYgslytksdldaalesgdplslvpvtDPDGHGT 176
Cdd:cd07487    1 GKGITVAVLDTGIDAPHPDF-----DGRIIRFADFVNTVNGRTT--PY-------------------------DDNGHGT 48
                         90       100       110
                 ....*....|....*....|....*....|
gi 941897650 177 YVAGVAGGTPDASAG-FLGAAPEADFAVVK 205
Cdd:cd07487   49 HVAGIIAGSGRASNGkYKGVAPGANLVGVK 78
T7SS_mycosin TIGR03921
type VII secretion-associated serine protease mycosin; Members of this family are ...
169-296 1.29e-09

type VII secretion-associated serine protease mycosin; Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]


Pssm-ID: 274856 [Multi-domain]  Cd Length: 350  Bit Score: 60.03  E-value: 1.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  169 TDPDGHGTYVAGVAGGTPDASAGFLGAAPEAdfavvKLKPAKQNLKDFYLVSSNAPVFEEDDLLSAMHFlnetaAAEGKP 248
Cdd:TIGR03921  48 DDCDGHGTLVAGIIAGRPGEGDGFSGVAPDA-----RILPIRQTSAAFEPDEGTSGVGDLGTLAKAIRR-----AADLGA 117
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 941897650  249 LVLCLALGTNQGSHSGTLPVSLTLA-RYGNTPGVIPVCATGNEGNAAHH 296
Cdd:TIGR03921 118 DVINISLVACLPAGSGADDPELGAAvRYALDKGVVVVAAAGNTGGDGQK 166
Peptidases_S8_Kp43_protease cd04842
Peptidase S8 family domain in Kp43 proteases; Kp43 proteases are members of the peptidase S8 ...
92-310 1.82e-09

Peptidase S8 family domain in Kp43 proteases; Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases


Pssm-ID: 173791 [Multi-domain]  Cd Length: 293  Bit Score: 58.88  E-value: 1.82e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  92 GGGYTGKNVIFGFLDTGIDYRHPAFLHANGQSRILAvwdqTDRtgtppaqfpygslytksdldaaLESGDPLSLVPvTDP 171
Cdd:cd04842    1 GLGLTGKGQIVGVADTGLDTNHCFFYDPNFNKTNLF----HRK----------------------IVRYDSLSDTK-DDV 53
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 172 DGHGTYVAGVAGGTP---DASAGFLGAAPEADFAVVKLKPAKQNLKDFYLVssnapvfeeDDLLSAMHFLNetaaaegkp 248
Cdd:cd04842   54 DGHGTHVAGIIAGKGndsSSISLYKGVAPKAKLYFQDIGDTSGNLSSPPDL---------NKLFSPMYDAG--------- 115
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 941897650 249 lvlclALGTNQGSHSGTLPVSLTLAR------YgNTPGVIPVCATGNEGNAAHHYYGSVSetyTPKNV 310
Cdd:cd04842  116 -----ARISSNSWGSPVNNGYTLLARaydqfaY-NNPDILFVFSAGNDGNDGSNTIGSPA---TAKNV 174
Peptidase_S8 pfam00082
Subtilase family; Subtilases are a family of serine proteases. They appear to have ...
97-292 4.02e-09

Subtilase family; Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567.


Pssm-ID: 395035 [Multi-domain]  Cd Length: 287  Bit Score: 57.85  E-value: 4.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650   97 GKNVIFGFLDTGIDYRHPAFlhangQSRILAVWDqtdrtgtPPAQFPYgslytksdldaALESGDPLSLVPVTDPDGHGT 176
Cdd:pfam00082   1 GKGVVVAVLDTGIDPNHPDL-----SGNLDNDPS-------DDPEASV-----------DFNNEWDDPRDDIDDKNGHGT 57
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  177 YVAGVAGGTPDASAGFLGAAPEADFAVVKLkPAKQNLKDFylvssnapvfeedDLLSAMhflneTAAAEGKPLVLCLALG 256
Cdd:pfam00082  58 HVAGIIAAGGNNSIGVSGVAPGAKILGVRV-FGDGGGTDA-------------ITAQAI-----SWAIPQGADVINMSWG 118
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 941897650  257 TnQGSHSGTLPVSLTLARYG--NTPGVIPVCATGNEGN 292
Cdd:pfam00082 119 S-DKTDGGPGSWSAAVDQLGgaEAAGSLFVWAAGNGSP 155
Peptidases_S8_Subtilisin_subset cd07477
Peptidase S8 family domain in Subtilisin proteins; This group is composed of many different ...
99-301 4.73e-08

Peptidase S8 family domain in Subtilisin proteins; This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173803 [Multi-domain]  Cd Length: 229  Bit Score: 54.07  E-value: 4.73e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  99 NVIFGFLDTGIDYRHPAfLHANgqsrilaVWDQTDRTGTPPAQFpygslytksdldaalesgdplslvpvTDPDGHGTYV 178
Cdd:cd07477    1 GVKVAVIDTGIDSSHPD-LKLN-------IVGGANFTGDDNNDY--------------------------QDGNGHGTHV 46
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 179 AGVAGGTpDASAGFLGAAPEADFAVVKlkpakqnlkdfylvssnapVFEED------DLLSAMHFlnetaAAEGKPLVLC 252
Cdd:cd07477   47 AGIIAAL-DNGVGVVGVAPEADLYAVK-------------------VLNDDgsgtysDIIAGIEW-----AIENGMDIIN 101
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 941897650 253 LALGTNQGShsgtlPVSLTLARYGNTPGVIPVCATGNEGNAAHHY-----YGSV 301
Cdd:cd07477  102 MSLGGPSDS-----PALREAIKKAYAAGILVVAAAGNSGNGDSSYdypakYPSV 150
Peptidases_S8_Protein_convertases_Kexins_Furin-lik cd04059
Peptidase S8 family domain in Protein convertases; Protein convertases, whose members include ...
94-199 1.10e-07

Peptidase S8 family domain in Protein convertases; Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.


Pssm-ID: 173789 [Multi-domain]  Cd Length: 297  Bit Score: 53.72  E-value: 1.10e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  94 GYTGKNVIFGFLDTGIDYRHPAfLHANgqSRILAVWDQTDRTGTPpaqFPygslytksdldaalesgdplslvPVTDPDG 173
Cdd:cd04059   35 GITGKGVTVAVVDDGLEITHPD-LKDN--YDPEASYDFNDNDPDP---TP-----------------------RYDDDNS 85
                         90       100
                 ....*....|....*....|....*.
gi 941897650 174 HGTYVAGVAGGTPDASAGFLGAAPEA 199
Cdd:cd04059   86 HGTRCAGEIAAVGNNGICGVGVAPGA 111
Peptidases_S8_6 cd07490
Peptidase S8 family domain, uncharacterized subfamily 6; This family is a member of the ...
105-291 2.69e-07

Peptidase S8 family domain, uncharacterized subfamily 6; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173815 [Multi-domain]  Cd Length: 254  Bit Score: 52.17  E-value: 2.69e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 105 LDTGIDYRHPAFLHANGQSRILavwdqtDRTGTPPAQfpygslytksdldaalesgdplslvPVTDPDGHGTYVAGVAGG 184
Cdd:cd07490    7 LDTGVDADHPDLAGRVAQWADF------DENRRISAT-------------------------EVFDAGGHGTHVSGTIGG 55
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 185 TPDASAGfLGAAPEADFAVVKLkpakqnlkdfyLVSSNAPvfeEDDLLSAMHFlnetaAAEGKPLVLCLALGtnqGSHSG 264
Cdd:cd07490   56 GGAKGVY-IGVAPEADLLHGKV-----------LDDGGGS---LSQIIAGMEW-----AVEKDADVVSMSLG---GTYYS 112
                        170       180
                 ....*....|....*....|....*..
gi 941897650 265 TLPVSLTLARYGNTPGVIPVCATGNEG 291
Cdd:cd07490  113 EDPLEEAVEALSNQTGALFVVSAGNEG 139
Peptidases_S8_Autotransporter_serine_protease_like cd04848
Peptidase S8 family domain in Autotransporter serine proteases; Autotransporter serine ...
96-293 1.60e-06

Peptidase S8 family domain in Autotransporter serine proteases; Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.


Pssm-ID: 173794 [Multi-domain]  Cd Length: 267  Bit Score: 49.63  E-value: 1.60e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  96 TGKNVIFGFLDTGIDYRHPAFlhangQSRILAVWDQTDRTGTPPAqfpygslytksdldaalesgdplslvPVTDPDGHG 175
Cdd:cd04848    1 TGAGVKVGVIDSGIDLSHPEF-----AGRVSEASYYVAVNDAGYA--------------------------SNGDGDSHG 49
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 176 TYVAGVAGGTPDASaGFLGAAPEADFAVVKLKPAkqnlKDFYLVSSNAPVFEEDDLLSAMHFLNETAAAEGKPLVLCLAL 255
Cdd:cd04848   50 THVAGVIAAARDGG-GMHGVAPDATLYSARASAS----AGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTY 124
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 941897650 256 GTNQGSHSGTLPVSLTLARygNTpGVIPVCATGNEGNA 293
Cdd:cd04848  125 KGSAATQGNTLLAALARAA--NA-GGLFVFAAGNDGQA 159
Peptidases_S8_Subtilisin_like cd07473
Peptidase S8 family domain in Subtilisin-like proteins; This family is a member of the ...
98-292 1.18e-05

Peptidase S8 family domain in Subtilisin-like proteins; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173799 [Multi-domain]  Cd Length: 259  Bit Score: 47.19  E-value: 1.18e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  98 KNVIFGFLDTGIDYRHPaflhangqsrilavwDQTDRTGTPPAQFP------YGSLYTKSDLDAALESGDPlslvPVTDP 171
Cdd:cd07473    2 GDVVVAVIDTGVDYNHP---------------DLKDNMWVNPGEIPgngiddDGNGYVDDIYGWNFVNNDN----DPMDD 62
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 172 DGHGTYVAGVAGGTPDASAGFLGAAPEadfavVKLKPAKqnlkdfylvssnapvfeeddllsamhFLNETAAAEGKPLVL 251
Cdd:cd07473   63 NGHGTHVAGIIGAVGNNGIGIAGVAWN-----VKIMPLK--------------------------FLGADGSGTTSDAIK 111
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 941897650 252 CLALGTNQG----SHS--GTLPVSLTLA--RYGNTPGVIPVCATGNEGN 292
Cdd:cd07473  112 AIDYAVDMGakiiNNSwgGGGPSQALRDaiARAIDAGILFVAAAGNDGT 160
Peptidases_S8_15 cd07498
Peptidase S8 family domain, uncharacterized subfamily 15; This family is a member of the ...
100-301 1.17e-04

Peptidase S8 family domain, uncharacterized subfamily 15; This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.


Pssm-ID: 173822 [Multi-domain]  Cd Length: 242  Bit Score: 43.87  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 100 VIFGFLDTGIDYRHPAFlhaNGQSRILAVWDQTDRTGTPpaqfpygslytksdldaalesgdplslvpvTDPDGHGTYVA 179
Cdd:cd07498    1 VVVAIIDTGVDLNHPDL---SGKPKLVPGWNFVSNNDPT------------------------------SDIDGHGTACA 47
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 180 GVAGGTPDASAGFLGAAPEAdfavvKLKPAKQNLKDFYLVSSNapvfEEDDLlsamhflneTAAAEGKPLVLCLALGTNQ 259
Cdd:cd07498   48 GVAAAVGNNGLGVAGVAPGA-----KLMPVRIADSLGYAYWSD----IAQAI---------TWAADNGADVISNSWGGSD 109
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 941897650 260 GSHSGTLPVSlTLARYG-NTPGVIPVCATGNEGNAAHHYYGSV 301
Cdd:cd07498  110 STESISSAID-NAATYGrNGKGGVVLFAAGNSGRSVSSGYAAN 151
Peptidases_S8_Fervidolysin_like cd07485
Peptidase S8 family domain in Fervidolysin; Fervidolysin found in Fervidobacterium pennivorans ...
90-298 1.52e-04

Peptidase S8 family domain in Fervidolysin; Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values.


Pssm-ID: 173811 [Multi-domain]  Cd Length: 273  Bit Score: 43.63  E-value: 1.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650  90 LYGGGYTGKNVIFGFLDTGIDYRHPAfLHANGqsrilavwdqtDRTGTPPAQFPYgslytksdlDAALESGDPLSLVPVT 169
Cdd:cd07485    2 AWEFGTGGPGIIVAVVDTGVDGTHPD-LQGNG-----------DGDGYDPAVNGY---------NFVPNVGDIDNDVSVG 60
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 941897650 170 dpDGHGTYVAGVAGGTPDASAGFLGAAPEADFAV-VKLKPAkQNLKDFYLVSsnapvfeEDDLLSAMHFlnetAAAEGKP 248
Cdd:cd07485   61 --GGHGTHVAGTIAAVNNNGGGVGGIAGAGGVAPgVKIMSI-QIFAGRYYVG-------DDAVAAAIVY----AADNGAV 126
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 941897650 249 LVLCLALGTNQGSHSGTLPVS----LTLARYGNTPGVIPVCATGNEGNAAHHYY 298
Cdd:cd07485  127 ILQNSWGGTGGGIYSPLLKDAfdyfIENAGGSPLDGGIVVFSAGNSYTDEHRFP 180
Peptidases_S8_BacillopeptidaseF-like cd07481
Peptidase S8 family domain in BacillopeptidaseF-like proteins; Bacillus subtilis produces and ...
453-490 2.00e-03

Peptidase S8 family domain in BacillopeptidaseF-like proteins; Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.


Pssm-ID: 173807 [Multi-domain]  Cd Length: 264  Bit Score: 40.44  E-value: 2.00e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 941897650 453 NNGFSPESGRGFTRLGEIKPDFAAPGVSVTGPGPAGSY 490
Cdd:cd07481  184 NDVLADFSSRGPSTYGRIKPDISAPGVNIRSAVPGGGY 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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