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Conserved domains on  [gi|937510743|ref|WP_054597943|]
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MULTISPECIES: ABC transporter permease [Pseudomonas]

Protein Classification

ABC transporter permease( domain architecture ID 11427312)

ABC transporter permease similar to ABC oligopeptide transporter permease proteins (OppB, AppB, and AmiC), the transmembrane subunits (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Gene Ontology:  GO:0055085
PubMed:  18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 6-316 3.96e-111

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 324.71  E-value: 3.96e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743   6 LWLIGRRMGAAIVTLLIVSMVVFAITAVLPGDAAQQALGQFATPEQVAALRLKLGLDQPGVLRYLHWLMSLLSGDMGLSV 85
Cdd:COG0601    2 LRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  86 SNAMPVSDLMAGRVPNTLMLAAATALVSVPVALILGIGSAMGRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFAVNLGW 165
Cdd:COG0601   82 VYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGW 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 166 LSALSYASDITSPLQFLRTYALPVMTLCCVIVAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGPIAN 245
Cdd:COG0601  162 LPVSGRVSPWEDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVT 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 937510743 246 AIALSLSYLLGGVVIVETIFNYPGIASLMVDAVTNRDMALVQACTMLFCTAYLGLVLIADLCAILSNPRLR 316
Cdd:COG0601  242 VLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 6-316 3.96e-111

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 324.71  E-value: 3.96e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743   6 LWLIGRRMGAAIVTLLIVSMVVFAITAVLPGDAAQQALGQFATPEQVAALRLKLGLDQPGVLRYLHWLMSLLSGDMGLSV 85
Cdd:COG0601    2 LRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  86 SNAMPVSDLMAGRVPNTLMLAAATALVSVPVALILGIGSAMGRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFAVNLGW 165
Cdd:COG0601   82 VYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGW 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 166 LSALSYASDITSPLQFLRTYALPVMTLCCVIVAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGPIAN 245
Cdd:COG0601  162 LPVSGRVSPWEDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVT 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 937510743 246 AIALSLSYLLGGVVIVETIFNYPGIASLMVDAVTNRDMALVQACTMLFCTAYLGLVLIADLCAILSNPRLR 316
Cdd:COG0601  242 VLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 11-316 2.28e-55

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 182.22  E-value: 2.28e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  11 RRMGAAIVTLLIVSMVVFAITAVLPGDAAQQALGQFATPEQVAALRLKLGLDQPGVLRYLHWLMSLLSGDMGLSVSNAMP 90
Cdd:PRK15081   7 KRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTSMVSRRP 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  91 VSDLMAGRVPNTLMLAAATALVSVPVALILGIGSAMGRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFAVNLGWLSALS 170
Cdd:PRK15081  87 VSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELGWLPTVG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 171 YASditsplqfLRTYALPVMTLCCVIVAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGPIANAIALS 250
Cdd:PRK15081 167 ADS--------WQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQ 238

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937510743 251 LSYLLGGVVIVETIFNYPGIASLMVDAVTNRDMALVQACTMLFCTAYLGLVLIADLCAILSNPRLR 316
Cdd:PRK15081 239 FGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 117-316 1.36e-19

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 84.66  E-value: 1.36e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  117 ALILGIGSAMGRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFavnlgwlsalsyasditsPLQFLRTYALPVMTLCCVI 196
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA------------------ILSILGHGILPAIILALLG 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  197 VAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGPIANAIALSLSYLLGGVVIVETIFNYPGIASLMVD 276
Cdd:pfam00528  63 WAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIE 142

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 937510743  277 AVTNRDMALVQACTMLFCTAYLGLVLIADLCAILSNPRLR 316
Cdd:pfam00528 143 AILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 100-266 1.44e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 73.47  E-value: 1.44e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 100 PNTLMLAAATALVSVPVALILGIGSAMgRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFAVNLGWLsalsyasditspl 179
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILAR-KRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG------------- 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 180 qFLRTYALPVMTLCCVIVAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGPIANAIALSLSYLLGGVV 259
Cdd:cd06261   68 -ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFA 146


                 ....*..
gi 937510743 260 IVETIFN 266
Cdd:cd06261  147 LVSFLGG 153
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 6-316 3.96e-111

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 324.71  E-value: 3.96e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743   6 LWLIGRRMGAAIVTLLIVSMVVFAITAVLPGDAAQQALGQFATPEQVAALRLKLGLDQPGVLRYLHWLMSLLSGDMGLSV 85
Cdd:COG0601    2 LRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTSF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  86 SNAMPVSDLMAGRVPNTLMLAAATALVSVPVALILGIGSAMGRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFAVNLGW 165
Cdd:COG0601   82 VYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLGW 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 166 LSALSYASDITSPLQFLRTYALPVMTLCCVIVAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGPIAN 245
Cdd:COG0601  162 LPVSGRVSPWEDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVT 241

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 937510743 246 AIALSLSYLLGGVVIVETIFNYPGIASLMVDAVTNRDMALVQACTMLFCTAYLGLVLIADLCAILSNPRLR 316
Cdd:COG0601  242 VLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 11-316 2.28e-55

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 182.22  E-value: 2.28e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  11 RRMGAAIVTLLIVSMVVFAITAVLPGDAAQQALGQFATPEQVAALRLKLGLDQPGVLRYLHWLMSLLSGDMGLSVSNAMP 90
Cdd:PRK15081   7 KRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTSMVSRRP 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  91 VSDLMAGRVPNTLMLAAATALVSVPVALILGIGSAMGRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFAVNLGWLSALS 170
Cdd:PRK15081  87 VSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELGWLPTVG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 171 YASditsplqfLRTYALPVMTLCCVIVAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGPIANAIALS 250
Cdd:PRK15081 167 ADS--------WQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQ 238

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937510743 251 LSYLLGGVVIVETIFNYPGIASLMVDAVTNRDMALVQACTMLFCTAYLGLVLIADLCAILSNPRLR 316
Cdd:PRK15081 239 FGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 9-316 3.08e-47

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 161.40  E-value: 3.08e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743   9 IGRRMGAAIVTLLIVSMVVFAITAVLPGDAAQQALGQF---ATPEQVAALRLKLGLDQPGVLRYLHWLMSLLSGDMGLSV 85
Cdd:PRK10352   5 ILRRLLLLIPMLLAASVIIFLMLRLGTGDPALDYLRLSnlpPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISF 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  86 SNAMPVSDLMAGRVPNTLMLAAATALVSVPVALILGIGSAMGRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFAVNLGW 165
Cdd:PRK10352  85 ATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 166 LSALSYASditsplqfLRTYALPVMTLCCVIVAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGPIAN 245
Cdd:PRK10352 165 LPAMGYGG--------WQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMIT 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 937510743 246 AIALSLSYLLGGVVIVETIFNYPGIASLMVDAVTNRDMALVQACTMLFCTAYLGLVLIADLCAILSNPRLR 316
Cdd:PRK10352 237 AVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIR 307
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
6-318 6.78e-38

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 137.64  E-value: 6.78e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743   6 LWLIGRRMGAAIVTLLIVSMVVFAITAVLPGDAAQQALGQFA-TPEQVAALRLKLGLDQPGVLRYLHWLMSLLSGDMGLS 84
Cdd:PRK10914   2 LQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGiSPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGIS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  85 VSNAMPVSDLMAGRVPNTLMLAAATALVSVPVALILGIGSAMGRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFAVNLG 164
Cdd:PRK10914  82 LKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWN 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 165 WLSALSYASDI-----TSPL------------------QFLRTYALPVMTLCCVIVAQMARMTRAAVIDQLDSPYVEMAR 221
Cdd:PRK10914 162 LTPVSGRVSDMvflddSNPLtgfmlidtaiwgedgnfiDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTAR 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 222 LKGVSPVRIVLRHALPNAIGPIANAIALSLSYLLGGVVIVETIFNYPGIASLMVDAVTNRDMALVQACTMLFCTAYLGLV 301
Cdd:PRK10914 242 AKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVN 321

                        330
                 ....*....|....*..
gi 937510743 302 LIADLCAILSNPRLRNQ 318
Cdd:PRK10914 322 LLVDLLYGVVNPRIRHK 338
oppB PRK09471
oligopeptide ABC transporter permease OppB;
6-316 1.11e-35

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 130.57  E-value: 1.11e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743   6 LWLIGRRMGAAIVTLLIVSMVVFAITAVLPGD--AAQQALgqfaTPEQVAALRLKLGLDQPGVLRYLHWLMSLLSGDMGL 83
Cdd:PRK09471   2 LKFILRRCLEAIPTLFILITISFFMMRLAPGSpfTGERTL----PPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGP 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  84 SVS-NAMPVSDLMAGRVPNTLMLAAATALVSVPVALILGIGSAMGRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFAVN 162
Cdd:PRK09471  78 SFKyKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAIT 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 163 LGWLSALSYASditSPLQFLrtyALPVMTLCCVIVAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGP 242
Cdd:PRK09471 158 LHWLPGGGWNG---GALKFM---ILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLP 231

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937510743 243 IANAIALSLSYLLGGVVIVETIFNYPGIASLMVDAVTNRDMALVQACTMLFCTAYLGLVLIADLCAILSNPRLR 316
Cdd:PRK09471 232 VLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
PRK15110 PRK15110
peptide ABC transporter permease SapB;
11-313 7.96e-24

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 98.99  E-value: 7.96e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  11 RRMGAAIVTLLIVSMVVFAITAVLPGdaaqqalgqfaTPEQVAALrlklgLDQpgvlrYLHWLMSLLSGDMGLSVSNAMP 90
Cdd:PRK15110   7 RRLLLLIVTLFLLTLVGFSLSYFTPH-----------APLQGASL-----WDA-----WVFWFNGLLHWDFGVSSINGQP 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  91 VSDLMAGRVPNTLMLAAATALVSVPVALILGIGSAMGRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFAVNLGWL---- 166
Cdd:PRK15110  66 ISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTLGWLpvsg 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 167 -------------SALSYASDITSP------LQFLRTYALPVMTLCCVIVAQMARMTRAAVIDQLDSPYVEMARLKGVSP 227
Cdd:PRK15110 146 rfdllyevkpvtgFALIDAWLSDSPwrdemiMSAIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSR 225

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 228 VRIVLRHALPNAIGPIANAIALSLSYLLGGVVIVETIFNYPGIASLMVDAVTNRDMALVQACTMLFCTAYLGLVLIADLC 307
Cdd:PRK15110 226 FTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNVLSDIL 305


                 ....*.
gi 937510743 308 AILSNP 313
Cdd:PRK15110 306 GAMANP 311
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 117-316 1.36e-19

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 84.66  E-value: 1.36e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  117 ALILGIGSAMGRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFavnlgwlsalsyasditsPLQFLRTYALPVMTLCCVI 196
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA------------------ILSILGHGILPAIILALLG 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  197 VAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGPIANAIALSLSYLLGGVVIVETIFNYPGIASLMVD 276
Cdd:pfam00528  63 WAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIE 142

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 937510743  277 AVTNRDMALVQACTMLFCTAYLGLVLIADLCAILSNPRLR 316
Cdd:pfam00528 143 AILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 49-315 1.86e-19

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 87.49  E-value: 1.86e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  49 PEQVAALRLKLGLDQPGVLRYLHWLMSLLSGDMGLSVSNAMPVSDLMAGRVPNTLMLAAATALVSVPVALILGIGSAMGR 128
Cdd:PRK15133  83 PEVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVRN 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 129 GGRIDSFLSFVTLAMVAVPEFLVATLAVLIFAVN--LGWL----------SALSYASDITSplqFLRTYALPVMTLCCVI 196
Cdd:PRK15133 163 GSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGsyFDLFplrglvsanfDSLPWYQKITD---YLWHITLPVLATVIGG 239

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 197 VAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNA-IGPIANAIALSLSYLLGGVVIVETIFNYPGIASLMV 275
Cdd:PRK15133 240 FAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAmLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGY 319

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
gi 937510743 276 DAVTNRDMALVQACTMLFCTAYLGLVLIADLCAILSNPRL 315
Cdd:PRK15133 320 EATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 101-254 1.92e-16

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 77.85  E-value: 1.92e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 101 NTLMLAAATALVSVPVALILGIGSAMgRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFAVNLGWLsalsyasditsplq 180
Cdd:COG1173   80 ISLLVGLLAVLIALVIGVLLGLLAGY-FGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNV-------------- 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 181 flrtyalpVMTLCCVIVAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGPI--------ANAIAL--S 250
Cdd:COG1173  145 --------ILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLivqatlgiASAILAeaG 216


                 ....
gi 937510743 251 LSYL 254
Cdd:COG1173  217 LSFL 220
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 100-266 1.44e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 73.47  E-value: 1.44e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 100 PNTLMLAAATALVSVPVALILGIGSAMgRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFAVNLGWLsalsyasditspl 179
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILAR-KRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG------------- 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 180 qFLRTYALPVMTLCCVIVAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGPIANAIALSLSYLLGGVV 259
Cdd:cd06261   68 -ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFA 146


                 ....*..
gi 937510743 260 IVETIFN 266
Cdd:cd06261  147 LVSFLGG 153
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 11-106 2.38e-15

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 71.10  E-value: 2.38e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743   11 RRMGAAIVTLLIVSMVVFAITAVLPGDAAQQALGQFATPEQVAALRLKLGLDQPGVLRYLHWLMSLLSGDM--------- 81
Cdd:pfam19300   7 RRTLGAVVILLIISAVTFFLFYAIPRDPARLACGKNCTPETLALIRHNLGLDKPIPVQYWHFLSGIFAGRDfgavghcpa 86

                          90       100
                  ....*....|....*....|....*...
gi 937510743   82 ---GLSVSNAMPVSDLMAGRVPNTLMLA 106
Cdd:pfam19300  87 pclGYSFANNEPVWDTIMDRFPTTLSLA 114
nikC PRK10417
nickel transporter permease NikC; Provisional
 92-244 5.13e-05

nickel transporter permease NikC; Provisional


Pssm-ID: 236687 [Multi-domain]  Cd Length: 272  Bit Score: 43.89  E-value: 5.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  92 SDLMAGRVPNTLMLAAATALVsvpVALILGIGSAMG-RGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFA---VNLGWLS 167
Cdd:PRK10417  60 SRLMAGTRVSLGSVMACLLLV---LALGLVIGGSAGlLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGtglTNVIIAI 136

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937510743 168 ALSYasditsplqflrtyalpvmtlccviVAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGPIA 244
Cdd:PRK10417 137 ALSH-------------------------WAWYARMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPAVIPQLL 188
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 102-306 3.37e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 41.29  E-value: 3.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 102 TLMLAAATALVSVPVALILGIgsAMGRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFavNLGWLSAlsyasditsplqf 181
Cdd:COG0600   66 SLLRVLLGFALAALLGVPLGL--LLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWF--GIGEASK------------- 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 182 lrtyalpVMTLCCVIVAQMARMTRAAViDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGPIANAIALSLSYLLGGVVIV 261
Cdd:COG0600  129 -------IFVIFLGAFFPILLNTAAGV-RSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVA 200

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 937510743 262 ETIFNYPGIASLMVDAVTNRDMALVQACTMLFCTAYLGLVLIADL 306
Cdd:COG0600  201 ELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRL 245
PRK15406 PRK15406
oligopeptide ABC transporter permease OppC; Provisional
 95-272 2.82e-03

oligopeptide ABC transporter permease OppC; Provisional


Pssm-ID: 185304 [Multi-domain]  Cd Length: 302  Bit Score: 39.05  E-value: 2.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743  95 MAGRVpnTLMLAAATALVSVPVALILGIGSAMgRGGRIDSFLSFVTLAMVAVPEFLVATLAVLIFAVNLgwlsalsyasd 174
Cdd:PRK15406  99 IGGRI--SLMVGVAAALVAVVVGTLYGSLSGY-LGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNI----------- 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937510743 175 itsplqflrtyALPVMTLCCVIVAQMARMTRAAVIDQLDSPYVEMARLKGVSPVRIVLRHALPNAIGpianAIALSLSYL 254
Cdd:PRK15406 165 -----------LLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLG----VVVVYASLL 229

                        170
                 ....*....|....*...
gi 937510743 255 LGGVVIVETIFNYPGIAS 272
Cdd:PRK15406 230 VPSMILFESFLSFLGLGT 247
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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