|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15404 |
PRK15404 |
high-affinity branched-chain amino acid ABC transporter substrate-binding protein; |
1-371 |
0e+00 |
|
high-affinity branched-chain amino acid ABC transporter substrate-binding protein;
Pssm-ID: 237959 [Multi-domain] Cd Length: 369 Bit Score: 651.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 1 MRKPTQRVTHVLAAMAMAGFAHyslaADPIKIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDAC 80
Cdd:PRK15404 1 MKSKGKTLLAGCIALALSHAAL----ADDIKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGIKGDKLEGVEYDDAC 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 81 DPKQAVAVANKIVNDGVKFVVGHLCSGSTQPASDIYDEEGILMITAASTIPELTERGHSMIFRTIGLDNMQGPTAGKYIV 160
Cdd:PRK15404 77 DPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLIFRTIGLDSDQGPTAAKYIL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 161 EQVKPQRVAVLHDKQQYGEGIATAVKHALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQS 240
Cdd:PRK15404 157 EKVKPKRIAVLHDKQQYGEGLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYYGGYHPEMGQILRQA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 241 AENNFNAKFMGPEGVGNSDITAIAGKASEGMLVTLPKAFDQDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKS 320
Cdd:PRK15404 237 REAGLKTQFMGPEGVGNKSLSNIAGPASEGMLVTLPKRYDQDPANKAIVDAFKAKKQDPSGPFVWTTYAAVQSLAAGINR 316
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 921156217 321 SKSDDPETVAEAIRQGRFDTPTGTLEFTEKGDLKDFNFVVYEWHADGSKTA 371
Cdd:PRK15404 317 AGSDDPAKVAKYLKANTFDTVIGPLSWDEKGDLKGFEFGVFEWHADGTKTA 367
|
|
| PBP1_ABC_LIVBP-like |
cd06342 |
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active ... |
31-363 |
2.37e-135 |
|
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Pssm-ID: 380565 [Multi-domain] Cd Length: 334 Bit Score: 389.58 E-value: 2.37e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVNDGVKFVVGHLCSGSTQ 110
Cdd:cd06342 1 KIGVAGPLTGPNAALGQDIRNGAELAVDEINAKGGGLGFKIELVAQDDACDPAQAVAAAQKLVADGVVAVIGHYNSGAAI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 111 PASDIYDEEGILMITAASTIPELTERGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDKQQYGEGIATAVKHALD 190
Cdd:cd06342 81 AAAPIYAEAGIPMISPSATNPKLTEQGYKNFFRVVGTDDQQGPAAADYAAKTLKAKRVAVIHDGTAYGKGLADAFKKALK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 191 EAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGKASEG 270
Cdd:cd06342 161 ALGGTVVGREGITPGTTDFSALLTKIKAANPDAVYFGGYYPEAGLLLRQLREAGLKAPFMGGDGIVSPDFIKAAGDAAEG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 271 MLVTLPKA-FDQDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAIRQGRFDTPTGTLEFTE 349
Cdd:cd06342 241 VYATTPGApPEKLPAAKAFLKAYKAKFGEPPGAYAAYAYDAAQVLLAAIEKAGSTDRAAVAAALRATDFDGVTGTISFDA 320
|
330
....*....|....
gi 921156217 350 KGDLKDFNFVVYEW 363
Cdd:cd06342 321 KGDLTGPAFTVYQV 334
|
|
| LivK |
COG0683 |
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid ... |
27-367 |
1.32e-88 |
|
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism];
Pssm-ID: 440447 [Multi-domain] Cd Length: 314 Bit Score: 269.88 E-value: 1.32e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 27 ADPIKIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLC 105
Cdd:COG0683 1 ADPIKIGVLLPLTGPYAALGQPIKNGAELAVEEINAAGGVLGRKIELVVEDDASDPDTAVAAARKLIDqDKVDAIVGPLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 106 SGSTQPASDIYDEEGILMITAASTIPELTER-GHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDKQQYGEGIATA 184
Cdd:COG0683 81 SGVALAVAPVAEEAGVPLISPSATAPALTGPeCSPYVFRTAPSDAQQAEALADYLAKKLGAKKVALLYDDYAYGQGLAAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 185 VKHALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFmgpegvgnsditaia 264
Cdd:COG0683 161 FKAALKAAGGEVVGEEYYPPGTTDFSAQLTKIKAAGPDAVFLAGYGGDAALFIKQAREAGLKGPL--------------- 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 265 gkasegmlvtlpkafdqdpkNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAIRQGRFDTPTGT 344
Cdd:COG0683 226 --------------------NKAFVKAYKAKYGREPSSYAAAGYDAALLLAEAIEKAGSTDREAVRDALEGLKFDGVTGP 285
|
330 340
....*....|....*....|...
gi 921156217 345 LEFTEKGDLKDfNFVVYEWHADG 367
Cdd:COG0683 286 ITFDPDGQGVQ-PVYIVQVKADG 307
|
|
| PBP1_ABC_HAAT-like |
cd06349 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
31-360 |
3.03e-82 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380572 [Multi-domain] Cd Length: 338 Bit Score: 254.42 E-value: 3.03e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIV-NDGVKFVVGHLCSGST 109
Cdd:cd06349 1 KIGVSGPLTGDNAEYGQQFKNGVELAVDEINAAGGVNGRKLELVVYDDQGDPKEAVNIAQKFVsDDKVVAVIGDFSSSCS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTERGHSMiFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDKQQYGEGIATAVKHAL 189
Cdd:cd06349 81 MAAAPIYEEAGLVQISPTASHPDFTKGGDYV-FRNSPTQAVEAPFLADYAVKKLGAKKIAIIYLNTDWGVSAADAFKKAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 190 DEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGKASE 269
Cdd:cd06349 160 KALGGEIVATEAYLPGTKDFSAQITKIKNANPDAIYLAAYYNDAALIAKQARQLGWDVQIFGSSSLYSPEFIELAGDAAE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 270 GMLVTLP-KAFDQDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSdDPETVAEAIRQG-RFDTPTGTLEF 347
Cdd:cd06349 240 GVYLSSPfFPESPDPEVKEFVKAYKAKYGEDPDDFAARAYDAVNILAEAIEKAGT-DREAIRDALANIkDFSGLTGTITF 318
|
330
....*....|....
gi 921156217 348 TEKGD-LKDFNFVV 360
Cdd:cd06349 319 DENGDvLKSLTILV 332
|
|
| PBP1_ABC_LivK_ligand_binding-like |
cd06347 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
31-352 |
1.02e-77 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380570 [Multi-domain] Cd Length: 334 Bit Score: 242.45 E-value: 1.02e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLCSGST 109
Cdd:cd06347 1 KIGVIGPLTGEAAAYGQPALNGAELAVDEINAAGGILGKKIELIVYDNKSDPTEAANAAQKLIDeDKVVAIIGPVTSSIA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTErGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDK-QQYGEGIATAVKHA 188
Cdd:cd06347 81 LAAAPIAQKAKIPMITPSATNPLVTK-GGDYIFRACFTDPFQGAALAKFAYEELGAKKAAVLYDVsSDYSKGLAKAFKEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 189 LDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGKAS 268
Cdd:cd06347 160 FEKLGGEIVAEETYTSGDTDFSAQLTKIKAANPDVIFLPGYYEEAALIIKQARELGITAPILGGDGWDSPELLELGGDAV 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 269 EGMLVTLPKAFD-QDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAIRQGR-FDTPTGTLE 346
Cdd:cd06347 240 EGVYFTTHFSPDdPSPEVQEFVKAYKAKYGEPPNAFAALGYDAVMLLADAIKRAGSTDPEAIRDALAKTKdFEGVTGTIT 319
|
....*.
gi 921156217 347 FTEKGD 352
Cdd:cd06347 320 FDPNGN 325
|
|
| PBP1_ABC_transporter_LIVBP-like |
cd06268 |
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the ... |
31-319 |
2.45e-76 |
|
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily; Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.
Pssm-ID: 380492 [Multi-domain] Cd Length: 298 Bit Score: 237.61 E-value: 2.45e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIV-NDGVKFVVGHLCSGST 109
Cdd:cd06268 1 KIGVVVPLTGPYADYGEEILRGVALAVEEINAAGGINGRKLELVIADDQGDPETAVAVARKLVdDDKVLAVVGHYSSSVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTERGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDKQQYGEGIATAVKHAL 189
Cdd:cd06268 81 LAAAPIYQEAGIPLISPGSTAPELTEGGGPYVFRTVPSDAMQAAALADYLAKKLKGKKVAILYDDYDYGKSLADAFKKAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 190 DEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGKASE 269
Cdd:cd06268 161 KALGGEIVAEEDFPLGTTDFSAQLTKIKAAGPDVLFLAGYGADAANALKQARELGLKLPILGGDGLYSPELLKLGGEAAE 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 921156217 270 GMLVTLPKAFD-QDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMK 319
Cdd:cd06268 241 GVVVAVPWHPDsPDPPKQAFVKAYKKKYGGPPSWRAATAYDATQALAGDRV 291
|
|
| PBP1_ABC_ligand_binding-like |
cd19980 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
31-360 |
1.33e-74 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380635 [Multi-domain] Cd Length: 334 Bit Score: 234.42 E-value: 1.33e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLCSGST 109
Cdd:cd19980 1 KIGVIAPLSGPVAALGQQVLNGAKLAVEEINAKGGVLGRKLELVVEDDKCPPAEGVAAAKKLITdDKVPAIIGAWCSSVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTERGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDKQQYGEGIATAVKHAL 189
Cdd:cd19980 81 LAVMPVAERAKVPLVVEISSAPKITEGGNPYVFRLNPTNSMLAKAFAKYLADKGKPKKVAFLAENDDYGRGAAEAFKKAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 190 DEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGKASE 269
Cdd:cd19980 161 KAKGVKVVATEYFDQGQTDFTTQLTKLKAANPDAIFVVAETEDGALILKQARELGLKQQLVGTGGTTSPDLIKLAGDAAE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 270 GMLVTLPKAFD-QDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAIRQG-RFDTPTGTLEF 347
Cdd:cd19980 241 GVYGASIYAPTaDNPANKAFVAAYKKKYGEPPDKFAALGYDAVMVIAEAIKKAGSTDPEKIRAAALKKvDYKGPGGTIKF 320
|
330
....*....|...
gi 921156217 348 TEKGDLKDFNFVV 360
Cdd:cd19980 321 DEKGQAHKNVVLV 333
|
|
| PBP1_ABC_transporter_GPCR_C-like |
cd04509 |
Family C of G-protein coupled receptors and their close homologs, the type 1 ... |
31-277 |
2.09e-70 |
|
Family C of G-protein coupled receptors and their close homologs, the type 1 periplasmic-binding proteins of ATP-binding cassette transporter-like systems; This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type 1 periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, pheromone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts through either mGluRs or iGluRs. mGluRs subunits possess seven transmembrane segments and a large N-terminal extracellular domain. ABC-type leucine-isoleucine-valine binding protein (LIVBP) is a bacterial periplasmic binding protein that has homology with the amino-terminal domain of the glutamate-receptor ion channels (iGluRs). The extracellular regions of iGluRs are made of two PBP-like domains in tandem, a LIVBP-like domain that constitutes the N terminus (included in this model) followed by a domain related to lysine-arginine-ornithine-binding protein (LAOBP) that belongs to the type 2 periplasmic binding fold protein superfamily. The uncharacterized periplasmic components of various ABC-type transport systems are also included in this family.
Pssm-ID: 380490 Cd Length: 306 Bit Score: 222.95 E-value: 2.09e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTG----------PVAQYGDMQAMGANMAIEQINQAG-GVNGSQLQAVVYDDACDPKQAVAVANKIVND---- 95
Cdd:cd04509 1 KVGVLFAVHGkgpsgvpcgdIVAQYGIQRFEAMEQALDDINADPnLLPNNTLGIVIYDDCCDPKQALEQSNKFVNDliqk 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 96 -------------------GVKFVVGHLCSGSTQPASDIYDEEGILMITAASTIPELT-ERGHSMIFRTIGLDNMQGPTA 155
Cdd:cd04509 81 dtsdvrctngeppvfvkpeGIKGVIGHLCSSVTIPVSNILELFGIPQITYAATAPELSdDRGYQLFLRVVPLDSDQAPAM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 156 GKYIVEQVkPQRVAVLHDKQQYGEGIATAVKHALDEAKIPVALFEGVTAG--DKDFSALIAKMKKEN-VDFVYFGSYHPE 232
Cdd:cd04509 161 ADIVKEKV-WQYVSIVHDEGQYGEGGARAFQDGLKKGGLCIAFSDGITAGekTKDFDRLVARLKKENnIRFVVYFGYHPE 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 921156217 233 MGMLLRQSAENNFNAKF--MGPEGVGNSDITA-IAGKASEGMLVTLPK 277
Cdd:cd04509 240 MGQILRAARRAGLVGKFqfMGSDGWANVSLSLnIAEESAEGLITIKPK 287
|
|
| PBP1_ABC_HAAT-like |
cd06344 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
38-361 |
6.03e-69 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380567 [Multi-domain] Cd Length: 332 Bit Score: 219.79 E-value: 6.03e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 38 VTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIV-NDGVKFVVGHLCSGSTQPASDIY 116
Cdd:cd06344 6 VAWPFAPDGDLFLEGVELAVEEINAAGGVLGRKIRLVEYDDEASVDKGLAIAQRFAdNPDVVAVIGHRSSYVAIPASIIY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 117 DEEGILMITAASTIPELTERGHSMIFRTIGLDNMQGPTAGKYIVEQvKPQRVAVLHDKQQYGEGIATAVKHALDEAKIPV 196
Cdd:cd06344 86 ERAGLLMLSPGATAPKLTQHGFKYIFRNIPSDEDIARQLARYAARQ-GYKRIVIYYDDDSYGKGLANAFEEEARELGITI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 197 ALFEGVTAGDKDFSALIAK-MKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGKASEGmlVTL 275
Cdd:cd06344 165 VDRRSYSSDEEDFRRLLSKwKALDFFDAIFLAGSMPEGAEFIKQARELGIKVPIIGGDGLDSPELIEIAGKAAEG--VVV 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 276 PKAFD---QDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAIRQGR-FDTPTGTLEFTEKG 351
Cdd:cd06344 243 ATVFDpddPRPEVRAFVEAFRKKYGREPDVWAAQGYDAVKLLAEAIEKAGSTVPAKIASALRFLEnWEGVTGTYSFDANG 322
|
330
....*....|
gi 921156217 352 DLKDFNFVVY 361
Cdd:cd06344 323 DVVGKAIYFK 332
|
|
| PBP1_ABC_ligand_binding-like |
cd19984 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
31-315 |
2.67e-68 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380639 [Multi-domain] Cd Length: 296 Bit Score: 217.09 E-value: 2.67e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANK-IVNDGVKFVVGHLCSGST 109
Cdd:cd19984 1 KIGVILPLTGDAASYGEDMKNGIELAVEEINAAGGINGKKIELIYEDSKCDPKKAVSAANKlINVDKVKAIIGGVCSSET 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTERGhSMIFRTIGLDNMQGPTAGKYIVEQVKpQRVAVLHDKQQYGEGIATAVKHAL 189
Cdd:cd19984 81 LAIAPIAEQNKVVLISPGASSPEITKAG-DYIFRNYPSDAYQGKVLAEFAYNKLY-KKVAILYENNDYGVGLKDVFKKEF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 190 DEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGKASE 269
Cdd:cd19984 159 EELGGKIVASESFEQGETDFRTQLTKIKAANPDAIFLPGYPKEGGLILKQAKELGIKAPILGSDGFEDPELLEIAGEAAE 238
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 921156217 270 GMLVTLPKAFD-QDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMA 315
Cdd:cd19984 239 GVIFTYPAFDDsSEKKQKFFFYRYKEKYGKEPDIYAALAYDAVMILA 285
|
|
| PBP1_ABC_ligand_binding-like |
cd06335 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
31-333 |
1.03e-62 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380558 [Multi-domain] Cd Length: 348 Bit Score: 204.38 E-value: 1.03e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIV-NDGVKFVVGHLCSGST 109
Cdd:cd06335 1 KIGVIGPLTGPSAELGESARRGVELAVEEINAAGGILGRKIELVERDDEANPTKAVQNAQELIdKEKVVAIIGPTNSGVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTERGH---SMIFRTIGLDNMQGPTAGKYIVEQvKPQRVAVLHDKQQYGEGIATAVK 186
Cdd:cd06335 81 LATIPILQEAKIPLIIPVATGTAITKPPAkprNYIFRVAASDTLQADFLVDYAVKK-GFKKIAILHDTTGYGQGGLKDVE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 187 HALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGK 266
Cdd:cd06335 160 AALKKRGITPVATESFKIGDTDMTPQLLKAKDAGADVILVYGLGPDLAQILKAMEKLGWKVPLVGSWGLSMPNFIELAGP 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 921156217 267 ASEGMLVTLPKAFDQ-DPKNADLVAAFKAK---KQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAI 333
Cdd:cd06335 240 LAEGTIMTQTFIEDYlTPRAKKFIDAYKKKygtDRIPSPVSAAQGYDAVYLLAAAIKQAGSTDGKKIRAAL 310
|
|
| PBP1_ABC_HAAT-like |
cd19988 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
31-315 |
1.51e-59 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380643 [Multi-domain] Cd Length: 302 Bit Score: 194.80 E-value: 1.51e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLCSGST 109
Cdd:cd19988 1 KIGVFGPLSGDAAPYGQAMLQGAELAVEEINAAGGILGIPIELVVEDDEGLPAASVSAAKKLIYqDKVWAIIGSINSSCT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTERGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDKQQYGEGIATAVKHAL 189
Cdd:cd19988 81 LAAIRVALKAGVPQINPGSSAPTITESGNPWVFRCTPDDRQQAYALVDYAFEKLKVTKIAVLYVNDDYGRGGIDAFKDAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 190 DEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGKASE 269
Cdd:cd19988 161 KKYGIEVVVEESYNRGDKDFSPQLEKIKDSGAQAIVMWGQYTEGALIAKQARELGLKQPLFGSDGLVTPKFIELAGDAAE 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 921156217 270 GMLVTLP-KAFDQDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMA 315
Cdd:cd19988 241 GAIATTPfLPDSDDPKVSAFVEKYKKRYGEEPDVFAAQAYDAMNILA 287
|
|
| PBP1_ABC_ligand_binding-like |
cd06340 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
31-363 |
5.85e-59 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380563 [Multi-domain] Cd Length: 352 Bit Score: 194.70 E-value: 5.85e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGG---VNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLCS 106
Cdd:cd06340 1 KIGVLYPLSGPLALIGQEAKRGAELAVDEINAAGGiksLGGAKIELVVADTQSDPEVAASEAERLITqEGVVAIIGAYSS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 107 GSTQPASDIYDEEGILMITAASTIPELTERGHSMIFRTIGLDNMQGPTAGKYIVEQ-----VKPQRVAVLHDKQQYGEGI 181
Cdd:cd06340 81 SVTLAASQVAERYGVPFVTASAVADEITERGFKYVFRTAPTASQFAEDAVDFLKELakkkgKKIKKVAIIYEDSAFGTSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 182 ATAVKHALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDIT 261
Cdd:cd06340 161 AKGLKKAAKKAGLEVVLDEPYPAGATDLSSEVLKLKAAKPDVVFATSYTNDAILLLRTMKELGFKPKAIIGVGGGYSDPE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 262 AIA--GKASEGMLVTLPKAFDQ---DPKNADLVAAFKAK-KQDPSGAFVFpAYSAVQVMADAMKSSKSDDPETVAeAIRQ 335
Cdd:cd06340 241 FLKalGKDAEGVFSVVPWSPDLakkKPGAKEVNERYKKKyGEDMTGHAAR-AYTAAWVLADALERAGSTDPEAIR-AAAA 318
|
330 340 350
....*....|....*....|....*....|....
gi 921156217 336 GRFDTPTGTL------EFTEKGDLKDFNFVVYEW 363
Cdd:cd06340 319 LTLDIPEGLImpgggvKFDEKGQNVLARPVVVQW 352
|
|
| PBP1_ABC_ligand_binding-like |
cd06338 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
37-363 |
1.54e-58 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380561 [Multi-domain] Cd Length: 347 Bit Score: 193.57 E-value: 1.54e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 37 PVTGPVAQYGDMQAMGANMAIEQINQAGGVNGS----QLQAVVYDDACDPKQAVAVANK-IVNDGVKFVVGHLCSGSTQP 111
Cdd:cd06338 7 SLTGPFAGEGKAQKRGYELWVEDVNAAGGVKGGgkkrPVELVYYDDQSDPATAVRLYEKlITEDKVDLLLGPYSSGLTLA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 112 ASDIYDEEGILMITAASTIPELTERGHSMIFRTIGLDNMQGPTAGKYIVEQV-KPQRVAVLHDKQQYGEGIATAVKHALD 190
Cdd:cd06338 87 AAPVAEKYGIPMIAGGAASDSIFERGYKYVFGVLPPASDYAKGLLDLLAELGpKPKTVAIVYEDDPFGKEVAEGAREAAK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 191 EAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPE-GVGNSDITAIAGKASE 269
Cdd:cd06338 167 KAGLEVVYDESYPPGTTDFSPLLTKVKAANPDILLVGGYPPDAITLVRQMKELGYNPKAFFLTvGPAFPAFREALGKDAE 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 270 GMLVT---LPKA-FDQDPKNADLVAAFKAK-KQDPSGAFVFpAYSAVQVMADAMKSSKSDDPETVAEAIRQGRFDTPTGT 344
Cdd:cd06338 247 GVLGPsqwEPSLpYKVFPGAKEFVKAYKEKfGEEPSYHAAA-AYAAGQVLQQAIEKAGSLDPEKVRDALASLDFDTVYGP 325
|
330
....*....|....*....
gi 921156217 345 LEFTEKGDLKDFNFVVYEW 363
Cdd:cd06338 326 IKFDETGLQIGKPMVVVQW 344
|
|
| Peripla_BP_6 |
pfam13458 |
Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
29-367 |
1.12e-57 |
|
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins.
Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 190.95 E-value: 1.12e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 29 PIKIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIV-NDGVKFVVGHLCSG 107
Cdd:pfam13458 1 PIKIGVLTPLSGPYASSGKSSRAGARAAIEEINAAGGVNGRKIELVVADDQGDPDVAAAAARRLVdQDGVDAIVGGVSSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 108 STQPASDIYDEEGILMITAASTIPELTergHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDKQQYGEGIATAVKH 187
Cdd:pfam13458 81 VALAVAEVLAKKGVPVIGPAALTGEKC---SPYVFSLGPTYSAQATALGRYLAKELGGKKVALIGADYAFGRALAAAAKA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 188 ALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFM--GPEGVGNSDITAIAG 265
Cdd:pfam13458 158 AAKAAGGEVVGEVRYPLGTTDFSSQVLQIKASGADAVLLANAGADTVNLLKQAREAGLDAKGIklVGLGGDEPDLKALGG 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 266 KASEGMLVTLPKAFD-QDPKNADLVAAFKAK-KQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAIRQGRFDTPTG 343
Cdd:pfam13458 238 DAAEGVYATVPFFPDlDNPATRAFVAAFAAKyGEAPPTQFAAGGYIAADLLLAALEAAGSPTREAVIAALRALPYDGPFG 317
|
330 340
....*....|....*....|....
gi 921156217 344 TLEFTEKGDLKDFNFVVYEWHADG 367
Cdd:pfam13458 318 PVGFRAEDHQAVHCMYLVQVKADG 341
|
|
| PBP1_ABC_HAAT-like |
cd19986 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
31-318 |
1.51e-56 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380641 [Multi-domain] Cd Length: 297 Bit Score: 186.68 E-value: 1.51e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVNDG-VKFVVGHLCSGST 109
Cdd:cd19986 1 KIGVVAPLTGPAALNGEYQKNGAQLALEEINAAGGVLGRPLELVVEDDQGTNTGAVNAVNKLISDDkVVAVIGPHYSTQV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTiPELTERGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDKQQYGEGIATAVKHAL 189
Cdd:cd19986 81 LAVSPLVKEAKIPVITGGTS-PKLTEQGNPYMFRIRPSDSVSAKALAKYAVEELGAKKIAILYDNDDFGTGGADVVTAAL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 190 DEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGKASE 269
Cdd:cd19986 160 KALGLEPVAVESYNTGDKDFTAQLLKLKNSGADVIIAWGHDAEAALIARQIRQLGLDVPVIGSSSFATPTVLLLAGEALE 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 921156217 270 G-MLVTLPKAFDQDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAM 318
Cdd:cd19986 240 GiYSVTDFVPSDPDPKVQAFVKKYKAKYGEDPDLYSAWYYDAMYLLAGDG 289
|
|
| PBP1_ABC_ligand_binding-like |
cd06346 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
31-362 |
1.06e-55 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380569 [Multi-domain] Cd Length: 314 Bit Score: 185.07 E-value: 1.06e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLCSGST 109
Cdd:cd06346 1 KIGALLPLTGPLASLGPPMLAAAELAVEEINAAGGVLGKKVELVVEDSQTDPTAAVDAARKLVDvEGVPAIVGAASSGVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTE-RGHSMIFRTIGLDNMQGPTAGKYIVEQ-VKpqRVAVLHDKQQYGEGIATAVKH 187
Cdd:cd06346 81 LAVASVAVPNGVVQISPSSTSPALTTlEDKGYVFRTAPSDALQGVVLAQLAAERgFK--KVAVIYVNNDYGQGLADAFKK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 188 ALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNF-NAKFMGPEGVGNSD-ITAIAG 265
Cdd:cd06346 159 AFEALGGTVTASVPYEPGQTSYRAELAQAAAGGPDALVLIGYPEDGATILREALELGLdFTPWIGTDGLKSDDlVEAAGA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 266 KASEGMLVTLPKAfDQDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAmkssksddpetvaeairqgrFDTPTGTL 345
Cdd:cd06346 239 EALEGMLGTAPGS-PGSPAYEAFAAAYKAEYGDDPGPFAANAYDAVMLLALA--------------------YEGASGPI 297
|
330
....*....|....*..
gi 921156217 346 EFTEKGDLKDfNFVVYE 362
Cdd:cd06346 298 DFDENGDVAG-PYEIWK 313
|
|
| PBP1_ABC_HAAT-like |
cd06348 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
31-352 |
2.08e-55 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380571 [Multi-domain] Cd Length: 342 Bit Score: 185.13 E-value: 2.08e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANK-IVNDGVKFVVGHLCSGST 109
Cdd:cd06348 1 KIGVALSLTGPGALYGQSQKNGAQLAVEEINAAGGVGGVKIELIVEDTAGDPEQAINAFQKlINQDKVLAILGPTLSSEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTERGhSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHD-KQQYGEGIATAVKHA 188
Cdd:cd06348 81 FAADPIAQQAKVPVVGISNTAPGITDIG-PYIFRNSLPEDKVIPPTVKAAKKKYGIKKVAVLYDqDDAFTVSGTKVFPAA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 189 LDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGKAS 268
Cdd:cd06348 160 LKKNGVEVLDTETFQTGDTDFSAQLTKIKALNPDAIVISALAQEGALIVKQARELGLKGPIVGGNGFNSPDLIKLAGKAA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 269 EGMLVTLP-KAFDQDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKS-DDPETVAEAIRQ----GRFDTPT 342
Cdd:cd06348 240 EGVIVGSAwSPDNPDPKNQAFVAAYKEKYGKEPDQFAAQAYDAAYILAEAIKKAGStTDRADLRDALARiliaKDFEGPL 319
|
330
....*....|
gi 921156217 343 GTLEFTEKGD 352
Cdd:cd06348 320 GPFSFDADRD 329
|
|
| PBP1_ABC_HAAT-like |
cd19981 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
31-320 |
8.39e-55 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380636 [Multi-domain] Cd Length: 297 Bit Score: 182.11 E-value: 8.39e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLCSGST 109
Cdd:cd19981 1 KIGFFAPLTGPAAADGKSALHGAELAVEQINAAGGINGKKVELVVYDDQASPKQAVNIAQKLIEqDKVVAVVSGSYSGPT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTeRGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDKQQYGEGIATAVKHAL 189
Cdd:cd19981 81 RAAAPIFQEAKVPMVSAYAVHPDIT-KAGDYVFRVAFLGPVQGRAGAEYAVKDLGAKKVAILTIDNDFGKSLAAGFKEEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 190 DEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGKASE 269
Cdd:cd19981 160 KKLGAEIVSEYAYALGDRDFRPILTKIKSANPDAIYASGYYAEAAPIVKQARELGIKVPIIGQEGYDSPKFIEIAGSAAE 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 921156217 270 GMLVTLP-KAFDQDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMA-DAMKS 320
Cdd:cd19981 240 GVIITTSlNRDSDRPITQKFIKEYRKRYGIDPDMVAASTYDAVMVLAgEVQKP 292
|
|
| PBP1_ABC_ligand_binding-like |
cd06343 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
27-348 |
4.30e-52 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Pssm-ID: 380566 [Multi-domain] Cd Length: 355 Bit Score: 176.99 E-value: 4.30e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 27 ADPIKIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLC 105
Cdd:cd06343 4 DDEIKIGTSLPLSGPAAAYGKPVRAGAAAYFDEVNAAGGINGRKIELIVEDDGYDPARAVAAVRKLVEqDKVFAIVGGLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 106 SGSTQPASDIYDEEGILMITAASTIPELTERGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDKQQYGEGIATAV 185
Cdd:cd06343 84 TPTNLAVRPYLNEAGVPQLFPATGASALSPPPKPYTFGVQPSYEDEGRILADYIVETLPAAKVAVLYQNDDFGKDGLEGL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 186 KHALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPeGVGNSDIT--AI 263
Cdd:cd06343 164 KEALKAYGLEVVAEETYEPGDTDFSSQVLKLKAAGADVVVLGTLPKEAAAALKEAAKLGWKPTFLGS-SVSADPTTlaKA 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 264 AGKASEGMLVTL---PKAFDQDPKNADLVAAFKAK-KQDPSGAFVFPAYSAVQVMADAMKSSKSD-DPETVAEAIRQGR- 337
Cdd:cd06343 243 GGDAAEGVYSASylkDPTDADDPAVKEFREAYKKYfPDDPPNAYALYGYAAAQVFVEALKRAGKDlTREGLIKALESLKd 322
|
330
....*....|...
gi 921156217 338 FDT--PTGTLEFT 348
Cdd:cd06343 323 FDDggPGPPVTFS 335
|
|
| PBP1_As_SBP-like |
cd06330 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
31-347 |
4.94e-49 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic (As) and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Pssm-ID: 380553 [Multi-domain] Cd Length: 342 Bit Score: 168.51 E-value: 4.94e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLCSGST 109
Cdd:cd06330 1 KIGVITPLSGAAAVYGEPARNGAELAVEEINAAGGILGRKIELVVRDDKGKPDEAVRAARELVLqEGVDFLIGTISSGVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELT-ERGHSMIFRTIGLDNMQGPTAGKYIVEQ-VKPQRVAVLHDKQQYGEGIATAVKH 187
Cdd:cd06330 81 LAVAPVAEELKVLFIATDAATDRLTeENFNPYVFRTSPNTYMDAVAAALYAAKKpPDVKRWAGIGPDYEYGRDSWAAFKA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 188 ALDEAKIPV--------ALFEGvtagdkDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNF--NAKFMGPEGVGN 257
Cdd:cd06330 161 ALKKLKPDVevvgelwpKLGAT------DYTAYITALLAAKPDGVFSSLWGGDLVTFVKQAKPYGLfdKTKVVSGLGGGS 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 258 SDITAIAGKASEGMLVT--LPKAFDQDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAIRQ 335
Cdd:cd06330 235 EVLQALGKEMPEGLIGGgrYPFGWPDTPLNKAFVEAYRAKYGEYPTYWAYEAYAAVMALKAAIEKAGSTDTDKVIAALEG 314
|
330
....*....|..
gi 921156217 336 GRFDTPTGTLEF 347
Cdd:cd06330 315 LTFDTPGGKITI 326
|
|
| PBP1_ABC_RPA1789-like |
cd06333 |
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, ... |
31-350 |
2.48e-47 |
|
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, RPA1791-1793), involved in active transport of lignin-derived aromatic substrates, and its close homologs; This group includes RPA1789 (CouP) from Rhodopseudomonas palustris and its close homologs in other bacteria. RPA1789 (CouP) is the periplasmic binding-protein component of an ABC system (CouPSTU; RPA1789, RPA1791-1793) that is involved in the active transport of lignin-derived aromatic substrates. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380556 [Multi-domain] Cd Length: 342 Bit Score: 163.87 E-value: 2.48e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANK-IVNDGVKFVVGHLCSGST 109
Cdd:cd06333 1 KIGAILSLTGPAASLGIPERNAVELLVEQINAAGGINGRKLELIVYDDESDPTKAVTNARKlIEEDKVDAIIGPSTTGES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPeLTERGHSMIFRTIGLDNMQGPTAGKYIVEQ-VKpqRVAVLHDKQQYGEGIATAVKHA 188
Cdd:cd06333 81 LAVAPIAEEAKVPLISLAGAAA-IVEPVRKWVFKTPQSDSLVAEAILDYMKKKgIK--KVALLGDSDAYGQSGRAALKKL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 189 LDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGKAS 268
Cdd:cd06333 158 APEYGIEIVADERFARTDTDMTAQLTKIRAAKPDAVLVWASGPPAALVAKNLRQLGYKGPIYQSHGAANQDFIKLAGKAA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 269 EGMLVTLPK--AFDQDPKN-------ADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAIRQGR-F 338
Cdd:cd06333 238 EGVILPAGKllVADQLPDSdpqkkvlLEFVKAYEAKYGEGPSTFAGHAYDALLLLVEAIEPAGGTDRAALRDALENTKgL 317
|
330
....*....|..
gi 921156217 339 DTPTGTLEFTEK 350
Cdd:cd06333 318 VGVTGVYNFSPT 329
|
|
| PBP1_ABC_ligand_binding-like |
cd06336 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
31-334 |
3.31e-47 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380559 [Multi-domain] Cd Length: 345 Bit Score: 163.56 E-value: 3.31e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGG--VNGS--QLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLC 105
Cdd:cd06336 1 KIGFLGPLSGPAAAWGLPMLRGLELAADEINAAGGikVGGKkyKVEVVSYDDKYTPAEAVAAARRLVSqDGVKFIFGPGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 106 SGSTQPASDIYDEEGILMITAASTIPeLTERGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDKQQYGEGIATAV 185
Cdd:cd06336 81 SAIAAAVQPVTERNKVLLLTAAFSDP-ILGPDNPLLFRIPPTPYEYAPPFIKWLKKNGPIKTVALIAPNDATGKDWAAAF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 186 KHALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEM-GMLLRQSAENNFNAKFMGPEGVGNSDITAIA 264
Cdd:cd06336 160 VAAWKAAGGEVVAEEFYDRGTTDFYPVLTKILALKPDALDLGGSSPGPaGLIIKQARELGFKGPFVSEGGAKADEILKEV 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 921156217 265 GK-ASEGMLVTLPKAFDQ--DPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAIR 334
Cdd:cd06336 240 GGeAAEGFIGVLPADDDPiaSPGAKAFVERYKKKYGEPPNSESALFYDAAYILVKAMEKAGTVDDTKKIRAAL 312
|
|
| PBP1_ABC_ligand_binding-like |
cd06345 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
31-352 |
8.81e-43 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380568 [Multi-domain] Cd Length: 356 Bit Score: 152.42 E-value: 8.81e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTgpvAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANK-IVNDGVKFVVGHLCSGST 109
Cdd:cd06345 1 KIGVLGPLS---APAGEAMERGAELAVEEINAAGGILGRKVELVVADTQGKPEDGVAAAERlITEDKVDAIVGGFRSEVV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTERGHS------MIFRTIGLDNMQGPTA----GKYIVEQVKPQRVAVLHDKQQYGE 179
Cdd:cd06345 78 LAAMEVAAEYKVPFIVTGAASPAITKKVKKdyekykYVFRVGPNNSYLGATVaeflKDLLVEKLGFKKVAILAEDAAWGR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 180 GIATAVKHALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVG-NS 258
Cdd:cd06345 158 GIAEALKKLLPEAGLEVVGVERFPTGTTDFTPILSKIKASGADVIVTIFSGPGGILLVKQWAELGVPAPLVGINVPAqDP 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 259 DITAIAGKASEGMLVTLPkAFDQDPKNA---DLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAIRQ 335
Cdd:cd06345 238 EFWENTGGAGEYEITLAF-AAPKAKVTPktkPFVDAYKKKYGEAPNYTAYTAYDAIYILAEAIERAGSTDPDALVKALEK 316
|
330
....*....|....*..
gi 921156217 336 GRFDTPTGTLEFTEKGD 352
Cdd:cd06345 317 TDYEGVRGRIKFDKKDE 333
|
|
| PBP1_ABC_HAAT-like |
cd19985 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
31-315 |
3.12e-40 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380640 [Multi-domain] Cd Length: 321 Bit Score: 144.73 E-value: 3.12e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVNDGVKFVVGHLCSGSTQ 110
Cdd:cd19985 1 HIAVVGPMSGKSASKGKSMLRGAELYIDQINAAGGINGKKVKLDVFDDQNDPDAARKAAQIIVSDKALAVIGHYYSSASI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 111 PASDIYDEEGILMITAASTIPELTeRGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDKQQYGEGIATAVKHALD 190
Cdd:cd19985 81 AAGKIYKKAGIPAITPSATADAVT-RDNPWYFRVIFNDSLQGRFLANYAKKVLKKDKVSIIYEEDSYGKSLASVFEATAR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 191 EAKIPVALFEGVTAGDKDFSALIAKM------KKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGN------- 257
Cdd:cd19985 160 ALGLKVLKKWSFDTDSSQLDQNLDQIvdelkkAPDEPGVIFLATHADEGAKLIKKLRDAGLKAPIIGPDSLASesfaqgf 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 921156217 258 ---SDITAIAGKASEGMLVTLPKAFDQDPKNA-DLVAAFKAKKQDPSGAFVFPAYSAVQVMA 315
Cdd:cd19985 240 aeyPEEKEEPGYYTDGIYATSPFIFDIANEKAqKFRDTYQKRYGEEPSWIAAFAYDAAMLAI 301
|
|
| PBP1_ABC_ligand_binding-like |
cd19982 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
31-315 |
4.29e-38 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380637 [Multi-domain] Cd Length: 302 Bit Score: 138.57 E-value: 4.29e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLCSGST 109
Cdd:cd19982 1 KIGAILSLTGPFAPFGEMFKNGYEMALEEINAAGGIKGKKLELVIEDDQSKPQTALAAAEKLVSqDKVPLIVGGYSSGIT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTERGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDKQQYGEGIATAVKHAL 189
Cdd:cd19982 81 LPVAAVAERQKIPLLVPTAADDDITKPGYKYVFRLNPPASIYAKALFDFFKELVKPKTIAILYENTAFGTSVAKAARRFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 190 DEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAK-FMG-PEGVGNSDITAIAGKA 267
Cdd:cd19982 161 KKRGIEVVADESYDKGATDFKPLLNKVKAANPDVVYMVSYLNDAILLMRQAKELGLNPKlFAGgGAGFTIPEFLKQAGPL 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 921156217 268 SEGMLVTLPKAFD-QDPKNADLVAAFKAK-KQDPS--GAfvfPAYSAVQVMA 315
Cdd:cd19982 241 AEYVVTATLWSPDvKYPGAKEFYEKYKAKyGVEPSyhEA---EAYAALYVAA 289
|
|
| PBP1_AmiC-like |
cd06331 |
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system ... |
31-347 |
3.58e-36 |
|
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF); This group includes the type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380554 [Multi-domain] Cd Length: 333 Bit Score: 134.27 E-value: 3.58e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLCSGST 109
Cdd:cd06331 1 KIGLLTPLSGPASVYGRAIANGAELAVEEINAAGGVLGRPVELVVEDDASDPATAVAAARRLIQqDKVDAIVGPITSATR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITaastiPELTERGHS--MIFRTIGLDNMQGPTAGKYIVEQVKPqRVAVLHDKQQYGEGIATAVKH 187
Cdd:cd06331 81 NAVAPVAERAKVPLLY-----PTFYEGGECspYLFCFGEVPNQQLDPLIPWLMEEYGK-KFYLIGSDYVWPRTMNDAARR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 188 ALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYF---GSYHPEMgmlLRQSAENNFNAKF--MGPeGVGNSDITA 262
Cdd:cd06331 155 VIEAHGGEVVGEEYLPLGTTDFSSVIEKIKASGADVVLStlvGADAVTF---LKQFAAAGLRRKVriAAL-LFDENTLAG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 263 IAGKASEGMLVTLPkAFD--QDPKNADLVAAFKAK---KQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAIRQGR 337
Cdd:cd06331 231 LGAEAAEGIYSVLS-YFQslDTPENKAFVAAYRKKfgeDAPPITSLSEAAYEAVHLYAAAVEKAGSTDPEAVIAALPGVS 309
|
330
....*....|
gi 921156217 338 FDTPTGTLEF 347
Cdd:cd06331 310 FDGPQGPVTM 319
|
|
| PBP1_SBP-like |
cd06329 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
31-345 |
5.98e-33 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380552 [Multi-domain] Cd Length: 343 Bit Score: 125.85 E-value: 5.98e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVNDGVKFVVGHLCSGSTQ 110
Cdd:cd06329 1 KIAFIDPLSGPFASVGEIYLKGLQFAIEEINAGGGLLGRKIELVPFDNKGSPQEALIQLKKAIDQGIRFVLQGNSSAVAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 111 ---PASDIYDEEG----ILMITAASTIPELT-ERGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHdkQQYGEG-- 180
Cdd:cd06329 81 aliDAIEKHNQRNpdkrVLFLNYGAEAPELTgAKCSFWHFRFDANADMKMAALADYMKKDGSIKKVYLIN--QDYSFGrd 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 181 IATAVKHALDEAKIPVALfegvtAGD--------KDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGP 252
Cdd:cd06329 159 VAAAAKKNLKKKRPDIEI-----VGEdlhplgkvKDFSPYIAKIKASGADTVITGNWGNDLTLLMKAARDSGLKAPFYTY 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 253 EGVGNSDITAIaGKASEGMLVTLPKAFD--QDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVA 330
Cdd:cd06329 234 YADGPGAPAAI-GEAGVGRLVAVAYWHPnpKTPELEKFAEAFRAKYGRYPDFNIGRTYMGVEMLAAAIKKAGSTDPEKVA 312
|
330
....*....|....*
gi 921156217 331 EAIRQGRFDTPTGTL 345
Cdd:cd06329 313 KALEGLSFDTPGGPV 327
|
|
| PBP1_SBP-like |
cd19989 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
31-315 |
2.17e-31 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380644 [Multi-domain] Cd Length: 299 Bit Score: 120.46 E-value: 2.17e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIV-NDGVKFVVGHLCSGST 109
Cdd:cd19989 1 KIGVLTPLSGPYAALGEEARRGAQLAVEEINAAGGILGRPVELVVEDTEGKPATAVQKARKLVeQDGVDFLTGAVSSAVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELT-ERGHSMIFRTIGLDNMQGPTAGKYIVEQvKPQRVAVLHDKQQYGEGIATAVKHA 188
Cdd:cd19989 81 LAVAPKAAELKVPYLVTVAADDELTgENCNRYTFRVNTSDRMIARALAPWLAEN-GGKKWYIVYADYAWGQSSAEAFKEA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 189 LDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAK---FMGPEGVGNSDITAIaG 265
Cdd:cd19989 160 IEELGGEVVGTLFAPLGTTDFSSYITQISDSGADGLLLALAGSDAVNFLKQAGQFGLGKKykiVGGILSIEPLALPAL-G 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 921156217 266 KASEGMLVTL--PKAFDqDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMA 315
Cdd:cd19989 239 DAAEGVYGGVryPPTLD-TPANRAFVEAYEKEYGEAPDNFAGEAYEAMQALA 289
|
|
| PBP1_ABC_HAAT-like |
cd19983 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
31-315 |
1.59e-29 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380638 [Multi-domain] Cd Length: 303 Bit Score: 115.37 E-value: 1.59e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVNDGVKFVVGHLCSGSTQ 110
Cdd:cd19983 1 RIGFVGGLTGRYSDLGVQGRNGAQLAVEEINAAGGINGRPVELIIRDDQQDPEAAKAADRELIAGGVVAIIGHMTSAMTV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 111 PASDIYDEEGILMITAASTIPELTerGHS-MIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVLHDK--QQYGEGIATAVKH 187
Cdd:cd19983 81 AVLPVINEAKVLMISPTVSTPELS--GKDdYFFRVTPTTRESAQALARYAYNRGGLRRVAVIYDLsnRAYSESWLDNFRS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 188 ALDEAKIPVALFEGVTAG-DKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGK 266
Cdd:cd19983 159 EFEALGGRIVAEIPFSSGaDVDFSDLARRLLASKPDGLLLVASAVDTAMLAQQIRKLGSKIPLFSSAWAATEELLELGGK 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 921156217 267 ASEGMLVTLpkAFDQDPKNADLVaAFKAK-----KQDPSGAFVFpAYSAVQVMA 315
Cdd:cd19983 239 AVEGMLFSQ--AYDRNSSNPRYL-AFKEAyeerfGREPSFAAAY-AYEAAMVLA 288
|
|
| ANF_receptor |
pfam01094 |
Receptor family ligand binding region; This family includes extracellular ligand binding ... |
50-366 |
2.57e-29 |
|
Receptor family ligand binding region; This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure.
Pssm-ID: 460062 [Multi-domain] Cd Length: 347 Bit Score: 115.95 E-value: 2.57e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 50 AMGANMAIEQINQAGGVN-GSQLQAVVYDDACDPKQAVAVANKIVNDGVKFVVGHLCSGSTQPASDIYDEEGILMITAAS 128
Cdd:pfam01094 3 LLAVRLAVEDINADPGLLpGTKLEYIILDTCCDPSLALAAALDLLKGEVVAIIGPSCSSVASAVASLANEWKVPLISYGS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 129 TIPELTERG-HSMIFRTIGLDNMQGPTAGKyIVEQVKPQRVAVLHDKQQYGEGIATAVKHALDEAKIPVAlFEGVTAGDK 207
Cdd:pfam01094 83 TSPALSDLNrYPTFLRTTPSDTSQADAIVD-ILKHFGWKRVALIYSDDDYGESGLQALEDALRERGIRVA-YKAVIPPAQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 208 DFSALIAKMKKE---NVDFVYFGSYHPEMGMLLRQSAENNFNAK---FMGPEGVGNS--DITAIAGKASEGMLVTLPkaf 279
Cdd:pfam01094 161 DDDEIARKLLKEvksRARVIVVCCSSETARRLLKAARELGMMGEgyvWIATDGLTTSlvILNPSTLEAAGGVLGFRL--- 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 280 dQDPKNADLVAAFKAKKQDPSG----------AFVFPAYSAVQVMADAMKSSKSDDP--------------ETVAEAIRQ 335
Cdd:pfam01094 238 -HPPDSPEFSEFFWEKLSDEKElyenlgglpvSYGALAYDAVYLLAHALHNLLRDDKpgracgalgpwnggQKLLRYLKN 316
|
330 340 350
....*....|....*....|....*....|.
gi 921156217 336 GRFDTPTGTLEFTEKGDLKDFNFVVYEWHAD 366
Cdd:pfam01094 317 VNFTGLTGNVQFDENGDRINPDYDILNLNGS 347
|
|
| PBP1_aromatic_compounds-like |
cd06332 |
type 1 periplasmic binding proteins of active transport systems predicted to be involved in ... |
31-352 |
3.37e-29 |
|
type 1 periplasmic binding proteins of active transport systems predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; This group includes the type 1 periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Pssm-ID: 380555 [Multi-domain] Cd Length: 336 Bit Score: 115.39 E-value: 3.37e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINqaGGVNGSQLQAVVYDDACDPKQAVAVANK-IVNDGVKFVVGHLCSGST 109
Cdd:cd06332 1 KIGLLAPLTGPFAALGEDMVRGFELALEEVG--GEVAGRKVELVVEDDAGDPDTAVTKARKlVEQDKVDVLIGPLSGDEG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTERGHSMIFRTIGLDN--MQGPtAGKYIVEQVKPQRVAVLHDKQQYGEGIATAVKH 187
Cdd:cd06332 79 LAVAPYAKEPGVPFINPVAGADDLTQRAKAPNFFRTSFTGsqWSAP-LGDYAYKELGYKKVATIGSDYAFGYEQAAGFKR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 188 ALDEA------KIPVALfegvtaGDKDFSALIAKMKKEnVDFVYFGSYHPEMGMLLRQSAE--NNFNAKFMGPEGVGNSD 259
Cdd:cd06332 158 GFEAAggevvqEIWVPL------GTTDFSPYIAQIPSA-DDAVFAFLGGADAVRFLKQYREfgLKDKIPLIGGGTTVDES 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 260 ITAIAGKASEGMLVTLPKAFD-QDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSD--DPETVAEAIRQG 336
Cdd:cd06332 231 VLPAMGDAALGIISASHYAEGlDNPENKKFVAAYKKKFGKLPSLYAAGGYDGAQAILEALEAVGGDvsDKQALAAALRKV 310
|
330
....*....|....*.
gi 921156217 337 RFDTPTGTLEFTEKGD 352
Cdd:cd06332 311 KFDSPRGPFSFDENRN 326
|
|
| PBP1_alkylbenzenes-like |
cd06360 |
type 1 periplasmic binding component of active transport systems predicted be involved in ... |
31-351 |
2.91e-27 |
|
type 1 periplasmic binding component of active transport systems predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; This group includes the type 1 periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Pssm-ID: 380583 [Multi-domain] Cd Length: 357 Bit Score: 110.46 E-value: 2.91e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQI-NQAGGvngSQLQAVVYDDACDPKQAVAVANKIV-NDGVKFVVGHLCSGS 108
Cdd:cd06360 1 KIGVLLPLTGPLAVNGEDVRDGFELYFDEIgNQVAG---RKIELIVEDDEGKPDVGLTKARKLVeRDKVHVLAGIVSSAV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 109 TQPASDIYDEEGI-LMITAASTIPELTERGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQRVAVL-------HDKqqyGEG 180
Cdd:cd06360 78 AYAVRDYVVEQKIpLVISNAGAAPLTQELASPYIFRTSFSNGQYDAPFGQYAYEKLGYRRIAVMasdyaagHEQ---AGA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 181 IATAVKHA----LDEAKIPValfegvtaGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKF--MGPEG 254
Cdd:cd06360 155 FARTFKQAggkvVQEIYPPL--------GTADFAPYLARIQQDAADAVWAFFAGADAIRFVKQYDEYGLKGKLplVGIGG 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 255 VGNSDITAIAGKASEGMLVTLPKAFDQD-PKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSD--DPETVAE 331
Cdd:cd06360 227 LVDDAILPEQGDAALGIVSYLHYSAALDtPENKAFVQAYRKKYGRDPGLYAEGGYVAARAIAEALEAVKGNveDKEAFLE 306
|
330 340
....*....|....*....|
gi 921156217 332 AIRQGRFDTPTGTLEFTEKG 351
Cdd:cd06360 307 ALRKVRFEAPRGPFRFDPYQ 326
|
|
| PBP1_RPA0668_benzoate-like |
cd20014 |
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the ... |
31-347 |
3.35e-26 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0668 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0668 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380667 [Multi-domain] Cd Length: 346 Bit Score: 107.32 E-value: 3.35e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINqaGGVNGSQLQAVVYDDACDPKQAVAVANKIV-NDGVKFVVGHLCSGST 109
Cdd:cd20014 1 KIGLLLPYSGVYAALGEDIRNGFQLYLDEHG--GKLGGRPIELVKEDDEADPDVALQKARKLIeQDKVDVLVGPVSSGVA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELT-ERGHSMIFRTIGLDNMQGPTAGKYIVEQVKpQRVAVLHDKQQYGEGIATAVKHA 188
Cdd:cd20014 79 LAIRDVVEQAKVPLIVANAGANALTrAACSPYIFRTSFSNWQLGYALGKYAAENVG-KTVVTIASDYAAGREVVAGFKEG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 189 LDEAKIPVALFEGVTAGD-KDFSALIAKMKKENVDFVYF---GSYHPEmgmLLRQSAENNFNAK--FMGPEGVGNSDITA 262
Cdd:cd20014 158 FEAAGGKVVGEIWTPLGTtTDFSPYLTQIAASGPDAVYAffaGADAVR---FVKQYAEFGLKGKipLYGPGFLTDEDVLP 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 263 IAGKASEGMLVTLPKAFDQD-PKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSD--DPETVAEAIRQGRFD 339
Cdd:cd20014 235 ALGEAAEGIITVLHYAPTLDnPANRAFVAAYQAKYGRLPDVYAVQGYDAAQVIDAALEAVGGDtsDKDILAAALELGSID 314
|
....*...
gi 921156217 340 TPTGTLEF 347
Cdd:cd20014 315 SPRGPFRF 322
|
|
| PBP1_ABC_ligand_binding-like |
cd06326 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
30-339 |
2.86e-24 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380549 [Multi-domain] Cd Length: 339 Bit Score: 101.85 E-value: 2.86e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 30 IKIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIV-NDGVKFVVGHLCSGS 108
Cdd:cd06326 1 IVIGQSAPLSGPLAELGREYLAGAKAYFDQVNAAGGINGRKIRLVTLDDGYDPARTVENTRQLIeQDKVVALFGYVGTAN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 109 TQPASDIYDEEGILMITAASTIPELTERGHSMIFRTigldnmqgpTAG-----KYIVEQVKP---QRVAVLHDKQQYGEG 180
Cdd:cd06326 81 VEAVLPLLEEAGVPLVGPLTGADSLREPGNPYVFHV---------RASyadevEKIVRHLATlglKRIAVVYQDDPFGKE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 181 IATAVKHALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDI 260
Cdd:cd06326 152 GLAAAEAALAARGLEPVATAAVARNAADVAAAAAALAAAKPQAVVLIAAGKAAAAFIKALRAAGGAAQFYGLSVVGAAAL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 261 TAIAGKASEGMLVT--LPKAFDQ-DPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSD-DPETVAEAIR-Q 335
Cdd:cd06326 232 AKALGDAARGVVVSqvVPNPWSTtLPLVREYQAAMKAAGPKEPSYASLEGYIAARVLVEALRRAGRNpTRESLVAALEsL 311
|
....
gi 921156217 336 GRFD 339
Cdd:cd06326 312 GRLD 315
|
|
| PBP1_ABC_ligand_binding-like |
cd19978 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
30-339 |
4.45e-24 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in the uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380633 [Multi-domain] Cd Length: 341 Bit Score: 101.50 E-value: 4.45e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 30 IKIALAGPVTGPVAQYGdmQAM--GANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLCS 106
Cdd:cd19978 1 IRLGMSAALSGPAAELG--NEMkrGIEAAFNEVNAQGGVNGRKIKLIALDDGYEPDRTVKNTKKLIEeDKVFALIGYVGT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 107 GSTQPASDIYDEEGILMITAASTIPELTERGHSMIFrtigldNMQGPTAG------KYIVEQVKPQRVAVLHDKQQYGEG 180
Cdd:cd19978 79 PTALAALPLANEKKIPLFGPFTGAEFLRTPFLPYVF------NLRASYADetealvDYLVKTLGPKRIAIFYQNDAFGLA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 181 IATAVKHALDEAKI-PVAlfEGV-TAGDKDFSALIAKMKKENVD-FVYFGSYHPeMGMLLRQSAENNFNAKFMGPEGVGN 257
Cdd:cd19978 153 GLEGAKKALKKRGLtPVA--EGSyTRNTLDVEEALAKILKAKPEaIILVGTYAP-AAEFIRLARAAGLNPLFANVSFVGS 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 258 SDITAIAGKASEGMLVT--LPkafDQDPKNADLVAAFKA--KKQDPS---GAFVFPAYSAVQVMADAMKSSKSD-DPETV 329
Cdd:cd19978 230 EALALELGDYGEGVIVSqvVP---DPNDSSLPIVKEYREamKKYGPNappDFVSLEGYLAARLLVEALKKAGPPlTREKL 306
|
330
....*....|
gi 921156217 330 AEAIRQGRFD 339
Cdd:cd19978 307 LALEESLKND 316
|
|
| PBP1_ABC_ligand_binding-like |
cd06334 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
31-344 |
1.04e-22 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380557 [Multi-domain] Cd Length: 360 Bit Score: 97.70 E-value: 1.04e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGhLCSGST 109
Cdd:cd06334 1 KIGLLTDLTGPTADVGKPYAQGVRDYLNYVNEEGGINGVKIELEECDTGYKVPRAVACYKRLKAqDGVVAILG-WGTGDT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTE-RGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQ----RVAVLHDKQQYG-EGIAT 183
Cdd:cd06334 80 EALAPRVAKDKIPYISASYGRSLADDgKVFPYNFFVGATYSSQARALLKYIAQEWGGKlkgpKVAFVYHDSPFGrEPIPA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 184 AVKHAlDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAI 263
Cdd:cd06334 160 LKAYA-KELGFEVVAEQVPSPGALDATAQWLRIRRAGPDYVIIQGTGGSVAVIIKDAKRLGLKTKFIGNIWGGDEDLIKL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 264 AGKASEGMLVTLPKAFDQD-PKNADLVAA-FKAKKQDPSGAFVFPAYS----AVQVMADAMKSSKSDDPET-----VAEA 332
Cdd:cd06334 239 AGDAAEGYVGVSPFAFGTDdPPGKEIVEEvAKKGKGDGPEEVGTVYYNrgwaTAMLAVEAIRRADKAGGGTglgnkLKAG 318
|
330
....*....|..
gi 921156217 333 IRQGRFDTPTGT 344
Cdd:cd06334 319 LERLKDFDLGGL 330
|
|
| PBP1_amide_urea_BP-like |
cd06356 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
39-346 |
4.67e-22 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the type 1 periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Pssm-ID: 380579 [Multi-domain] Cd Length: 334 Bit Score: 95.45 E-value: 4.67e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 39 TGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANK-IVNDGVKFVVGHLCSGSTQPASDIYD 117
Cdd:cd06356 9 SGGLNIYGKPMVHAMKLAVEEINAAGGLLGRQIELVAYDTQSDMQKYTQYAQQlILRDKVDVVFGGITSASREAIRPILR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 118 EEGILMItaastIPELTERG--HSMIFRTIGLDNMQGPTAGKYIVEQVKPqRVAVLHDKQQYGEGIATAVKHALDEAKIP 195
Cdd:cd06356 89 RNKILYF-----YNTQYEGGvcDKNTFCTGSTPEQQVSPLIEWAIKKYGK-KVYIIAADYNFGQISADWVKKYAKKNGGE 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 196 VALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPE---GVGNSDITaIAGKASEGML 272
Cdd:cd06356 163 VVGEEFFPLDVTDFGPTIQKIQAAKPDFVVSLLVGGNHISFYRQWAAAGLKKKIPIVStvfGAGNEHKV-LSPPELEGMY 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 921156217 273 VTLPKAFDQD-PKNADLVAAFKAK--KQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAIRQG-RFDTPTGTLE 346
Cdd:cd06356 242 VSYSYFEELDtPANKAFVAKWRAKygDEPYINQEAVGVYNAVYLWAEAVEKAGSTEREAVIAALESGiSFDGPSGTVT 319
|
|
| PBP1_AmiC |
cd06357 |
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding ... |
39-345 |
2.46e-21 |
|
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family; This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Pssm-ID: 380580 [Multi-domain] Cd Length: 357 Bit Score: 93.80 E-value: 2.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 39 TGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANK-IVNDGVKFVVGhlCsgstqpasdiyd 117
Cdd:cd06357 9 TGVTAIIEQSMLNGALLAIEEINAAGGVNGRPIEPVVYDPASDPDRYRELAERlLLEDGVRHIFG--C------------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 118 eegilmITAAS---TIPELtERGHSMIFRTI---GLD------------NMQGPTAGKYIVEQVKPqRVAVLHDKQQYGE 179
Cdd:cd06357 75 ------YTSASrkaVLPVV-ERHNALLWYPTpyeGFEyspnviytgavpNQHLLPLARYLLAHFGK-RVFLVGSNYVYPW 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 180 GIATAVKHALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYF-----GSYHpemgmLLRQSAENNFNAKFMgP-- 252
Cdd:cd06357 147 ESNRVARELIEASGGEVVGERYVPLGDTDFAEIIEEIKSLKPDVVFStlvgdSIYA-----FYRAYAEAGLDPADM-Pia 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 253 -----EgvgnSDITAIAGKASEGMLVTLPkAFD--QDPKNADLVAAFKAK--KQDPSGAFVFPAYSAVQVMADAMKSSKS 323
Cdd:cd06357 221 slttsE----AEVAAIGAEAAAGHYTSAP-YFQsiDTPENRAFVEAYRARfgDDAVTSAVAEAAYFQVHLLARAIERAGS 295
|
330 340
....*....|....*....|..
gi 921156217 324 DDPETVAEAIRQGRFDTPTGTL 345
Cdd:cd06357 296 DDPEAIRAALYGQEFDAPQGPV 317
|
|
| PBP1_SBP-like |
cd06328 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
31-347 |
1.20e-20 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380551 [Multi-domain] Cd Length: 336 Bit Score: 91.59 E-value: 1.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGG-VNGSQLQAVVYDDACDPKQAVAVANKIV-NDGVKFVVGHLCSGS 108
Cdd:cd06328 1 KIGVITSLTGPLAAYGKQTERGFELGLEYATDGTMeVDGRKIEVIVKDDQGDPDTAKAAATELIgDDGVDILVGTVSSAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 109 TQPASDIYDEEGILMITAASTIPELTERGHS-MIFRTiGLDNMQGPTAGKYIVEQVKPQRVAVLHDKQQYGEGIATAVKH 187
Cdd:cd06328 81 ALALAPVAEQNKKILIVGPAAADSITGENWNkYTFRT-SRNSWQDAIAGAKALADPLGKSVAFLAQDYAFGQDGVAAFKK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 188 ALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITAIAGKA 267
Cdd:cd06328 160 ALEAKGGKIVGEELVPVTTTDFTPYLQRILDAKPDVLFVAWAGTGALTLWQQLADQGVLDDIKVVTGGPDIATLAALGDA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 268 SEGML------VTLPKafdqDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSD-DPETVAEAIRQGRFDT 340
Cdd:cd06328 240 LPGIEgltyyyYGLPK----NPVNDWLVKAHKERYNAPPDLFTAGGFAAAQAVVRALEKAGGDtDVEKLIAALEGLTFET 315
|
....*..
gi 921156217 341 PTGTLEF 347
Cdd:cd06328 316 PKGKMTI 322
|
|
| PBP1_SBP-like |
cd20378 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
31-346 |
4.43e-19 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380668 [Multi-domain] Cd Length: 357 Bit Score: 87.40 E-value: 4.43e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQinqAGGVNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLCSGST 109
Cdd:cd20378 1 TLGGLVSMSGAFAAAGKLADRGMRLAVEE---YGGALGRPLKYITRDTEGKPGTGVRKVQEAIAqDGARFFIGGTLSSVA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTiPELT-ERGHSMIFRtigldnMQGPTAG-------KYIVEQVKPQRVAVLHDKQQYGEGI 181
Cdd:cd20378 78 LAVSEEAEKAGGVYITSGGA-DEITgSRCNRSTFR------WSVPTYGairqtvrPVIKAMPKAKRWYTITPQYVFGESL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 182 ATAVKHALDEAKIpvalfEGVTA-----GDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAenNF----NAKFMGP 252
Cdd:cd20378 151 LKNAKEVLKEKGI-----EHVGNsyhslGEREFSGYLTKAMAARPDVLLILNFGSQAVDALRQAV--SFglkrKMKILVA 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 253 EGVGNSDITAIAGKASEGMLVTLPKAFDQD-PKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAE 331
Cdd:cd20378 224 WSSGLDQFQELGPDICEGVYFGAQYWHDVDtPANKALVKVYQAKFKETPSYALAAGYACTRMLLDAIDKAGSTDPAAVIK 303
|
330
....*....|....*
gi 921156217 332 AIRQGRFDTPTGTLE 346
Cdd:cd20378 304 ALEGLKYDGITGDEE 318
|
|
| PBP1_Nba-like |
cd06359 |
type 1 periplasmic binding component of active transport systems predicted to be involved in ... |
31-347 |
1.08e-18 |
|
type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway; This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Pssm-ID: 380582 [Multi-domain] Cd Length: 333 Bit Score: 85.77 E-value: 1.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINqaGGVNGSQLQAVVYDDACDPKQAVAVANKIVN-DGVKFVVGHLCSGST 109
Cdd:cd06359 1 KIGFITTLSGPAAVLGQDMRDGFNLALEQLG--GKLGGLPVEVVVEDDQLKPDVAKQAAERLIErDKVDFVTGIIFSNVM 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELT-ERGHSMIFRTIGLDNMQGPTAGKYIVEQ-VKpqRVAVLHDKQQYGEGIATAVKH 187
Cdd:cd06359 79 LAVVKPVVDSKVFYISANAGPSDLAgKGCNPNFFVTSWQNDQLHEAAGKYANDKgYK--RVYLLAPNYQAGKDALAGFKR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 188 ALdeaKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFgSYHPEMGM-LLRQSAENNFNAK--FMGPEGVGNSDITAIA 264
Cdd:cd06359 157 TY---KGEVVGEIYTPLGQLDFSAELAQIRAAKPDAVFA-FYPGGMGVnFVKQYAQAGLKKKipLYTVGTLDDEDLLPAM 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 265 GKASEGMLVTLPKAFDQD-PKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSD--DPETVAEAIRQGRFDTP 341
Cdd:cd06359 233 GDAALGVLSVSQWSPDLDnPENKRFVAAFRKKYGRPPSNYAAQGYDAALLIDAAVKAVGGDlsDKDALRAALRKADFKSV 312
|
....*.
gi 921156217 342 TGTLEF 347
Cdd:cd06359 313 RGAFRF 318
|
|
| PBP1_SBP-like |
cd19987 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
31-332 |
9.49e-17 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380642 [Multi-domain] Cd Length: 353 Bit Score: 80.45 E-value: 9.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAG------------GVNGSQLQAVVYDDACDPKQAVAVANK-IVNDGV 97
Cdd:cd19987 1 TIGLNVPLSGPYAPQGEDQRRGFELAVDHLNNGGglvdkdsrlsgdGILGKKVELVTADTETKADTAVDNAKRlIEQDGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 98 KFVVGHLCSGSTQPASDIYDEEGILMITAASTIPELT-ERGHSMIFRTIGLDNMQGPTAGKYIVEQVKPQR-VAVLHDKQ 175
Cdd:cd19987 81 VMITGGSSSAVAVAAQKLAQKEGVLYFAGLSHSNDTTgKDCHRYGFRECFNAHMSAKALAPYLVEKFGKDRkYFYLTADY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 176 QYGEGIATAVKHALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQsaennfnAKFMGPEGv 255
Cdd:cd19987 161 TWGHSTEQSMREYTEAHGWKTVGNPATPLGETDFSAALLNAADSGADVLVLVLFGRDMVNALKQ-------AKQFGLLK- 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 256 gnsDITAI------------AGKASEGMLVT------LPKAFDQDPKNADlvaAFKAKKQDPSGAFVFPAYSAVQVMADA 317
Cdd:cd19987 233 ---KMDIVvplltafmaesvGPEIMEGVLGTvnwhwsLPDDYSYAFGKAE---AFEKEYGAYPSQAAASAYVQVLQYAAA 306
|
330
....*....|....*
gi 921156217 318 MKSSKSDDPETVAEA 332
Cdd:cd19987 307 VERAGSFDPPAVIRA 321
|
|
| PBP1_ABC_ligand_binding-like |
cd06341 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
31-334 |
1.85e-14 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380564 [Multi-domain] Cd Length: 340 Bit Score: 73.50 E-value: 1.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAqyGDMQAM--GANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIV-NDGVKFVVGHLcSG 107
Cdd:cd06341 1 KIGLIYPDTGPGA--ASFSAAraGAEARFGLANAAGGINGRKVEYVWCDDQSDPATNLQAARQLVeDEKVFALVGSS-SA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 108 STQPASDIYDEEGILMITAASTIPELTERGHSMIFrTIGLDNMQGpTAGKYIVEQvKPQRVAVLHD-----KQQYGEGIA 182
Cdd:cd06341 78 ASGSANDYLAQAGIPVVGGAGVSVWCFRNMFSNFF-SLGGGGSTT-TYGQYAAAL-GGTKAAVVVTdipaaSQQLAQQLA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 183 TavkhALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITA 262
Cdd:cd06341 155 A----SLRAAGVEVVGTAPYAAAAPDYTAVAQAAKAAGADAVVGVLDPDVAARVLKAARAQGLDLKVALSPSGYDPSVLA 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 921156217 263 IAGKASEGMLVTLPKA--FDQDPKNA---DLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSDDpeTVAEAIR 334
Cdd:cd06341 231 AYGAALAGVSVASTFLpfEADTPAVKayrAAMAKYAPELQDPLQQFALSGYIAADLFVRGLEAAGGCP--TRAAFIK 305
|
|
| Peripla_BP_5 |
pfam13433 |
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic ... |
30-347 |
1.91e-14 |
|
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic binding proteins.
Pssm-ID: 463875 [Multi-domain] Cd Length: 363 Bit Score: 73.78 E-value: 1.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 30 IKIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANK-IVNDGVKFVVGHLCSGS 108
Cdd:pfam13433 1 IKVGVLHSLTGTMAISERSLKDATLMAIEEINAAGGVLGRKIEPVVVDPASDWPLFAEKARKlIDQDKVRVVFGCWTSAS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 109 TQPASDIYDEEGILMI----------------TAAS----TIPE---LTERGHSMIFrTIGLDNMQGPTAGKYIVEQVKP 165
Cdd:pfam13433 81 RKAVLPVFERHNGLLFypvqyegfessrnifyTGAApnqqAIPAvdyLLSELGKRFF-LVGSDYVYPRTTNRILRAYLKA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 166 QRVAVlhdkqqygegiatavkhaLDEAKIPValfegvtaGDKDFSALIAKMKKENVDFVY---FGSYhpeMGMLLRQSAE 242
Cdd:pfam13433 160 KGGEV------------------VGERYLPL--------GSSDWQSIVAKIKAAGPDVVFstiNGDS---NVAFYRALRA 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 243 NNFNAKFMgP---EGVGNSDITAIAGKASEGMLVTLP--KAFDQdPKNADLVAAFKAKK------QDPSGAfvfpAYSAV 311
Cdd:pfam13433 211 AGITAEDI-PvmsFSVAEEELAGMGPEPLVGHLAAWNyfQSLDT-PENKAFVAAFKARYgddrvtNDPMEA----AYIGV 284
|
330 340 350
....*....|....*....|....*....|....*.
gi 921156217 312 QVMADAMKSSKSDDPETVAEAIRQGRFDTPTGTLEF 347
Cdd:pfam13433 285 HLWAQAVEKAGTDDPDAVRQAMLGQEFDAPQGPVKI 320
|
|
| PBP1_FmdD-like |
cd06355 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
55-344 |
3.23e-13 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type 1 periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380578 [Multi-domain] Cd Length: 347 Bit Score: 69.91 E-value: 3.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 55 MAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANK-IVNDGVKFVVGHLCSGSTQPASDIYDEEGILMITAASTipEL 133
Cdd:cd06355 25 LAIDEINAAGGLLGRKIEPVIEDGASDWPTFAEKAEKlITQDKVAVIFGCWTSASRKAVLPVIEKYNGLLFYPVQY--EG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 134 TERGHSmIFRTIGLDNMQGPTAGKYIVEQVKpQRVAVLHDKQQYGEGIATAVKHALDEAKIPVALFEGVTAGDKDFSALI 213
Cdd:cd06355 103 LEQSPN-IVYTGATPNQQILPAIDWLLENLG-KRFFLVGSDYVFPRTANKIIRDQLKALGGEVVGEEYVPLGGTDFDAIV 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 214 AKMKKENVDFVyfgsyhpeMGMLLRQSAENNFNAkfMGPEGVGNSDITAIAGKASEGMLVTLPKA-----------FD-- 280
Cdd:cd06355 181 AKIKAFKPDVI--------VNTLNGDSNIAFFKQ--LAAAGITASDLPVLSFSVSEAELRAIGPEelaghyaawnyFQsl 250
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 921156217 281 QDPKNADLVAAFKAK--KQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAIRQGRFDTPTGT 344
Cdd:cd06355 251 DTPENQAFVEAFKAKygADRVTSDPMEAAYLGVYLWAQAVEKAGSFDPDAVRAALKGQSFEAPGGT 316
|
|
| PBP1_ABC_ligand_binding-like |
cd06337 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
31-348 |
5.14e-13 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380560 [Multi-domain] Cd Length: 354 Bit Score: 69.25 E-value: 5.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQ---LQAVVYDDACDPKQAVAVANKIV-NDGVKFVVGHLCS 106
Cdd:cd06337 1 KIGRVSPLTGPLAAFGEADPWVLEQIREAFADGGIKVGGKkypVEIVVRDSQSDPNRAGEAARDLIlRDKVDLMLASGTP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 107 GSTQPASDIYDEEGILMITAASTI-PELTERG------------HSMIFRTIGlDNMQGptagkyIVEQVK-PQRVAVLH 172
Cdd:cd06337 81 DTVNPVADQCEANGVPCISTDAPWqAWFFGRGgdpakgfkwtfhFFWGLEDIA-ANFLG------MWDQVPtNKVVGLLW 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 173 DKQQYGEGIATAVKHALdeakiPVALFEGVTAGD-----KDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNA 247
Cdd:cd06337 154 PNDPDGTAFADAFLGLP-----AAAGYTLVDPGRfppgtDDFSSIINAFKKAGVEIVTGVMIPPDFATFWRQAAQQGFKP 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 248 K-------FMGPEGVgnsditAIAGKASEGMLV------TLP-KAF--DQDPKnaDLVAAF-KAKKQD---PSGAfvfpA 307
Cdd:cd06337 229 KvvtigkaLLFPSAV------AALGDLGDGLSTevwwspAHPfKSSltGQTAA--ELADAYeKATGKQwtqPLGY----A 296
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 921156217 308 YSAVQVMADAMKSSKSDDPETVAEAIRQGRFDTPTGTLEFT 348
Cdd:cd06337 297 HALFEVAVDALKRAGSPDDEAVRAALADTDLDTIVGPVDFT 337
|
|
| PBP1_YraM_LppC_lipoprotein-like |
cd06339 |
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup ... |
31-351 |
2.04e-12 |
|
periplasmic binding component of lipoprotein LppC, an immunodominant antigen; This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Pssm-ID: 380562 [Multi-domain] Cd Length: 331 Bit Score: 67.30 E-value: 2.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGdmQAM--GANMAIEQinqaggVNGSQLQAVVYDDAcDPKQAVAVANKIVNDGVKFVVGHLCSGS 108
Cdd:cd06339 1 RIALLLPLSGPYAAAG--QAIrdGIELALFD------AGGSRPELRVYDTG-GPEGAAAAYQQAVAEGADLIIGPLLKSS 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 109 TQPASDIYDEEGILMItAASTIPELTERGHSMIFrtiGLD-NMQGPTAGKYIVEQVKpQRVAVLHDKQQYGEGIATAVKH 187
Cdd:cd06339 72 VAALAAAAQALGVPVL-ALNNDESATAGPGLFQF---GLSpEDEARQAARYAVQQGL-RRFAVLAPDNAYGQRVANAFRE 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 188 ALDEAKIPVALFEGVTAGDKDFSALIAKMKK----------------------ENVDFVYFGSYHPEMGMLLRQSAENNF 245
Cdd:cd06339 147 AWQALGGTVVAVESYDPDETDFSAAIRRLLGvdqsearirqlgellefeprrrQDFDAIFLPAGPEQARLIAPQLAFYGA 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 246 -NAKFMGPEGVGNSDITAIAGKASEG-MLVTLPKAFDqdpkNADLVAAFKAKKQDPSGAFVFPAYSAVQVmadamkssks 323
Cdd:cd06339 227 gDVPLLGTSLWYSGKLNLLRDPDLNGaWFADPPWLLS----PRAFPLRYRLAYGWPPPRLAALGYDAYRL---------- 292
|
330 340 350
....*....|....*....|....*....|....*
gi 921156217 324 ddpetVAEAIRQGRFDTP-------TGTLEFTEKG 351
Cdd:cd06339 293 -----AARLARLGGGLTPgagfsglTGLLRLDPDG 322
|
|
| PBP1_ABC_ligand_binding-like |
cd19979 |
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes ... |
31-333 |
7.09e-12 |
|
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380634 [Multi-domain] Cd Length: 350 Bit Score: 65.71 E-value: 7.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVNDgvKFVVGHLCSGSTQ 110
Cdd:cd19979 1 VIGLDADLSGGSAASGEAIKRGIQLAIDEINAAGGLLGRKLELVAKDHRGNPARGVDNLREFAAD--PDVLAVFGGLHSP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 111 PASDIYD---EEGILMITAASTIPELTERGHS--MIFRtIGLDNMQgptAGKYIVEQ---VKPQRVAVLHDKQQYGEGIA 182
Cdd:cd19979 79 VLLAELDfihELKIPYLVPWAAATPITRNGYSpnYIFR-LSVDDSL---AGPFLVEYalkKGCKRPALLLENTGWGRSNL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 183 TAVKHALDEAKIPVALFEGVTAGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNSDITA 262
Cdd:cd19979 155 KAMTKALAKKGLQPVGVEWFNWGDTDAKPQLRALKAAGADAILLVANAPEGAAIVKALAALPERLPIISHWGITGGDFPE 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 263 IAGKAsegmlvtlPKAFD-------------QDPKNADLVAAFKAK------KQD-PSGAFVFPAYSAVQVMADAMKSSK 322
Cdd:cd19979 235 LPREA--------LSKIDlrfiqtfsffdanQSPRGKQVLARYKRRypvedpESDiPAPVGFAHAYDLTHLLALAIEQAG 306
|
330
....*....|.
gi 921156217 323 SDDPETVAEAI 333
Cdd:cd19979 307 STDRAAVRAAL 317
|
|
| PBP1_GPCR_family_C-like |
cd06350 |
ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory ... |
48-277 |
2.00e-11 |
|
ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate; categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (m; Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extracellular region is further divided into the ligand-binding domain (LBD) and the cysteine-rich domain. The LBD has sequence similarity to the LIVBP, which is a bacterial periplasmic protein (PBP), as well as to the extracellular region of both iGluR and the gamma-aminobutyric acid (GABA)b receptor. iGluRs are divided into three main subtypes based on pharmacological profile: NMDA, AMPA, and kainate receptors. All family C GPCRs have a large extracellular N terminus that contain a domain with homology to bacterial periplasmic amino acid-binding proteins.
Pssm-ID: 380573 Cd Length: 350 Bit Score: 64.62 E-value: 2.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 48 MQAMgaNMAIEQINQAGGVNGS-QLQAVVYDDACDPKQAVAVA-----------------NKIVNDGVKFVVGHLCSGST 109
Cdd:cd06350 30 VEAM--IYAIEEINNDSSLLPNvTLGYDIRDTCSSSSVALESSleflldngikllansngQNIGPPNIVAVIGAASSSVS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 110 QPASDIYDEEGILMITAASTIPELTERG-HSMIFRTIGLDNMQGpTAGKYIVEQVKPQRVAVLHDKQQYGEGIATAVKHA 188
Cdd:cd06350 108 IAVANLLGLFKIPQISYASTSPELSDKIrYPYFLRTVPSDTLQA-KAIADLLKHFNWNYVSTVYSDDDYGRSGIEAFERE 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 189 LDEAKIPVALFEGVTAG--DKDFSALIAKMKKENVD--FVYFGSYHPEMGMLLRQSAENNFNAKFMGPEGVGNS-DITAI 263
Cdd:cd06350 187 AKERGICIAQTIVIPENstEDEIKRIIDKLKSSPNAkvVVLFLTESDARELLKEAKRRNLTGFTWIGSDGWGDSlVILEG 266
|
250
....*....|....
gi 921156217 264 AGKASEGMLVTLPK 277
Cdd:cd06350 267 YEDVLGGAIGVVPR 280
|
|
| PBP1_RPA0985_benzoate-like |
cd20013 |
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the ... |
31-343 |
2.49e-08 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0985 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0985 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380666 [Multi-domain] Cd Length: 356 Bit Score: 54.95 E-value: 2.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQinQAGGVNGSQLQAVVYDDA-CDPKQAVAVANK-IVNDGVKFVVGHLCSGS 108
Cdd:cd20013 1 KVGVIGPFSGPFADYGKQFDRGIDLYLKL--HGDKVGGRKVEVIYRDDGgPNPAVAKRLAQElIVRDKVQILIGFGFTPN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 109 TQPASDIYDEEGILMITAASTIPELTERghSMIFRTIGLDNMQ-GPTAGKYIVEQ-VKPQRVAVlhdkQQYGEGI--ATA 184
Cdd:cd20013 79 ALAVAPVATEAKTPTVIMNAATSSITRK--SPYFVRTSFTMWQvAYPMGKWAAKNgIKKAYTAV----ADYAPGHdaETA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 185 VKHAL--------DEAKIPVAlfegVTagdkDFSALIAKMKKENVD--FVYFGSYHPEMGMlLRQSAENNFNA---KFMG 251
Cdd:cd20013 153 FKKAFeaaggkivGSIRVPLA----TP----DFAPFMQRIKDAKPDavFVFVPAGAPSIGF-LKAYAERGLKEagiKLLG 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 252 PEGVGNSDITAIAGKASEGMLVTLPKAFDQD-PKNADLVAAFKAK--KQDPSGAFVFPAYSAVQVMADAMKSSKSD-DPE 327
Cdd:cd20013 224 TGDATDDDDLPAMGDAALGLITAGHYSAALDsPENKAFVAAYQKAygPDARPDFMAVAAYDGMALIYKMIKATGGKfDGD 303
|
330
....*....|....*.
gi 921156217 328 TVAEAIRQGRFDTPTG 343
Cdd:cd20013 304 KAMAAVKGLKWESPRG 319
|
|
| PBP1_glutamate_receptors-like |
cd06269 |
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl ... |
47-217 |
1.13e-06 |
|
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as natriuretic peptide receptors (NPRs), and N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of ionotropic glutamate rece; This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type 1 family. The family C GPCRs consists of metabotropic glutamate receptor (mGluR), a calcium-sensing receptor (CaSR), gamma-aminobutyric acid receptor (GABAbR), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing variants of the orphan receptors are not included in this CD. The family C GPCRs are activated by endogenous agonists such as amino acids, ions, and sugar based molecules. Their amino terminal ligand-binding region is homologous to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). The ionotropic glutamate receptors (iGluRs) have an integral ion channel and are subdivided into three major groups based on their pharmacology and structural similarities: NMDA receptors, AMPA receptors, and kainate receptors. The family of membrane bound guanylyl cyclases is further divided into three subfamilies: the ANP receptor (GC-A)/C-type natriuretic peptide receptor (GC-B), the heat-stable enterotoxin receptor (GC-C)/sensory organ specific membrane GCs such as retinal receptors (GC-E, GC-F), and olfactory receptors (GC-D and GC-G).
Pssm-ID: 380493 [Multi-domain] Cd Length: 332 Bit Score: 49.72 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 47 DMQAMgaNMAIEQINQAG-GVNGSQLQAVVYDDACDPKQAVAVA-NKIVNDGVKFVVGHLCSGSTQPASDIYDEEGILMI 124
Cdd:cd06269 18 VLPAF--ELALSDVNSRPdLLPKTTLGLAIRDSECNPTQALLSAcDLLAAAKVVAILGPGCSASAAPVANLARHWDIPVL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 125 TAASTIPELTER-GHSMIFRTIGLDNMQGPTAGKyIVEQVKPQRVAVLHDKQQYGEGIATAVKHALDEAKIPVALFEGVT 203
Cdd:cd06269 96 SYGATAPGLSDKsRYAYFLRTVPPDSKQADAMLA-LVRRLGWNKVVLIYSDDEYGEFGLEGLEELFQEKGGLITSRQSFD 174
|
170
....*....|....*
gi 921156217 204 AG-DKDFSALIAKMK 217
Cdd:cd06269 175 ENkDDDLTKLLRNLR 189
|
|
| PBP1_NHase |
cd06358 |
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively ... |
31-102 |
5.42e-06 |
|
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides; This group includes the type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified into two subgroups: ferric NHases and cobalt NHases.
Pssm-ID: 380581 [Multi-domain] Cd Length: 333 Bit Score: 47.59 E-value: 5.42e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGANMAIEQINQAGGVNGSQLQAVVYDDACDPKQAVAVANKIVNDG-VKFVVG 102
Cdd:cd06358 1 RIGLLIPLSGPAGLWGPSCEACAELAAAEINAAGGILGREVELVLIDAGGPPAEVAAAARRLVDDGaVDAIVG 73
|
|
| PBP1_SBP-like |
cd06327 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
31-351 |
5.49e-06 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative, gram-positive bacteria, and archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380550 [Multi-domain] Cd Length: 336 Bit Score: 47.57 E-value: 5.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPvaqYGDMQAMG----ANMAIEQINqaGGVNGSQLQAVVYDDACDPKQAVAVANKIV-NDGVKFVVGHLC 105
Cdd:cd06327 1 RIGVLTDLSGV---YADLSGPGsveaAKMAVEDFG--GKVLGRPIEVVSADHQNKPDVASAIAREWYdRDGVDAIVDVPN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 106 SGSTQPASDIYDEEGILMITAASTIPELTERGHSMifRTI--GLDN-MQGPTAGKYIVEQVKPQRVAVLHDK---QQYGE 179
Cdd:cd06327 76 SAVALAVQKLAKEKKKIAIVTGAGSSDLTGKACSP--YGVhwAYDTyALARGTVKALVKQGGKSWFFITADYafgHSLEA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 180 GIATAVKHA----LDEAKIPValfegvtaGDKDFSALIAKMKKENVDFVYFGSYHPEMGMLLRQSAENNFNAK--FMGPE 253
Cdd:cd06327 154 DATAAVKAAggkvVGSVRHPL--------GTTDFSSFLLQAQASGADVIALANAGADLVNAVKQAREFGLTDGgqKLAAL 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 254 GVGNSDITAIAGKASEGMLVTLPKAFDQDPKNADLVAAFKAKKQDPSGAFVFPAYSAVQVMADAMKSSKSDDPETVAEAI 333
Cdd:cd06327 226 LLFITDIHALGLDAAQGLYLTTAFYWDRDDATRAWAKRFFARTGKMPTMLQAGVYSAVLHYLKAVKAAGTDDADAVVAKM 305
|
330
....*....|....*...
gi 921156217 334 RQGRFDTPtgtleFTEKG 351
Cdd:cd06327 306 REMPVNDF-----FAKNG 318
|
|
| PBP1_NPR_GC-like |
cd06352 |
ligand-binding domain of membrane guanylyl-cyclase receptors; Ligand-binding domain of ... |
31-370 |
4.24e-05 |
|
ligand-binding domain of membrane guanylyl-cyclase receptors; Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type 1 periplasmic binding fold protein family.
Pssm-ID: 380575 [Multi-domain] Cd Length: 391 Bit Score: 45.04 E-value: 4.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 31 KIALAGPVTGPVAQYGDMQAMGA-NMAIEQINQAG-GVNGSQLQAVVYDDACDPKQAVAVANK-IVNDGVKFVVGHLCSG 107
Cdd:cd06352 1 KVGVLAPSNSQSLPVGYARSAPAiDIAIERINSEGlLLPGFNFEFTYRDSCCDESEAVGAAADlIYKRNVDVFIGPACSA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 108 STQPASDI---YDeegILMITAASTIPELTERGhsmIFRTigLDNMQGPTAG-----KYIVEQVKPQRVAVLHD-KQQYG 178
Cdd:cd06352 81 AADAVGRLatyWN---IPIITWGAVSASFLDKS---RYPT--LTRTSPNSLSlaealLALLKQFNWKRAAIIYSdDDSKC 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 179 EGIATAVKHAL-DEAKIPVALFEGV-TAGDKDFSALIAKMKKE--------------------------NVDFVYFgsyH 230
Cdd:cd06352 153 FSIANDLEDALnQEDNLTISYYEFVeVNSDSDYSSILQEAKKRariivlcfdsetvrqfmlaahdlgmtNGEYVFI---F 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 231 PEmgmLLRQSAENNFNAKFMgpegvGNSDITAIAGKASEGMLV-TLPkaFDQDPKNADLVAAFKAKKQDPSG-----AFV 304
Cdd:cd06352 230 IE---LFKDGFGGNSTDGWE-----RNDGRDEDAKQAYESLLViSLS--RPSNPEYDNFSKEVKARAKEPPFycydaSEE 299
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 921156217 305 FPAYSAVQvMADAM--------KSSKSD----DPETVAEAIRQGRFDTPTGTLEFTEKGDlKDFNFVVYEWHADGSKT 370
Cdd:cd06352 300 EVSPYAAA-LYDAVylyalalnETLAEGgnyrNGTAIAQRMWNRTFQGITGPVTIDSNGD-RDPDYALLDLDPSTGKF 375
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| PBP1_GABAb_receptor |
cd06366 |
ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for ... |
32-352 |
5.73e-05 |
|
ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA); Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb receptor or GABAbR). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha-i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Pssm-ID: 380589 [Multi-domain] Cd Length: 404 Bit Score: 44.93 E-value: 5.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 32 IALAGPVTGPVA---QYGDMQAmgANMAIEQINQAGGV-NGSQLQAVVYDDACDPKQAVAVANKIVNDGVKFVV--GHLC 105
Cdd:cd06366 2 IGGLFPLSGSKGwwgGAGILPA--AEMALEHINNRSDIlPGYNLELIWNDTQCDPGLGLKALYDLLYTPPPKVMllGPGC 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 106 SGSTQP---ASDIYDeegILMITAASTIPELTERG-HSMIFRTIGLDNMQGPTAGKyIVEQVKPQRVAVLHDKQQYGEGI 181
Cdd:cd06366 80 SSVTEPvaeASKYWN---LVQLSYAATSPALSDRKrYPYFFRTVPSDTAFNPARIA-LLKHFGWKRVATIYQNDEVFSST 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 182 ATAVKHALDEAKIPVALFEGVTAGDKDFSalIAKMKKENVDFVYFGSYHPEMGMLLRQSAENN-FNAK--FMGPEGVGNS 258
Cdd:cd06366 156 AEDLEELLEEANITIVATESFSSEDPTDQ--LENLKEKDARIIIGLFYEDAARKVFCEAYKLGmYGPKyvWILPGWYDDN 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921156217 259 DITAIAG----------KASEGMLVTLPKAFDQDPKNA-------DLVAAFKAK--KQDPSG-AFVFPAYSAVQVMADAM 318
Cdd:cd06366 234 WWDVPDNdvnctpeqmlEALEGHFSTELLPLNPDNTKTisgltaqEFLKEYLERlsNSNYTGsPYAPFAYDAVWAIALAL 313
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 921156217 319 --------KSSKS------DDPETVA---EAIRQGRFDTPTGTLEFTEKGD 352
Cdd:cd06366 314 nktieklaEYNKTledftyNDKEMADlflEAMNSTSFEGVSGPVSFDSKGD 364
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