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Conserved domains on  [gi|921064237|ref|WP_053078087|]
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MULTISPECIES: hypothetical protein [Bacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YqiK super family cl34451
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
9-69 4.80e-04

Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];


The actual alignment was detected with superfamily member COG2268:

Pssm-ID: 441869 [Multi-domain]  Cd Length: 439  Bit Score: 38.32  E-value: 4.80e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 921064237   9 EEERNEQIRKENERRfQQEQQRINNQRlhEINERNRIALERENARRRAEEKRKAEQKRKET 69
Cdd:COG2268  207 EAERETEIAIAQANR-EAEEAELEQER--EIETARIAEAEAELAKKKAEERREAETARAEA 264
 
Name Accession Description Interval E-value
YqiK COG2268
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
9-69 4.80e-04

Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];


Pssm-ID: 441869 [Multi-domain]  Cd Length: 439  Bit Score: 38.32  E-value: 4.80e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 921064237   9 EEERNEQIRKENERRfQQEQQRINNQRlhEINERNRIALERENARRRAEEKRKAEQKRKET 69
Cdd:COG2268  207 EAERETEIAIAQANR-EAEEAELEQER--EIETARIAEAEAELAKKKAEERREAETARAEA 264
rne PRK10811
ribonuclease E; Reviewed
 10-77 6.41e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 35.02  E-value: 6.41e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 921064237   10 EERNEQIRkeNERRFQQEQQRINNQRLHEINERNRIALE------RENARRRAEEKRKAEQKRKETSRTNTNVP 77
Cdd:PRK10811  634 ENREENRR--NRRQAQQQTAETRESQQAEVTEKARTQDEqqqaprRERQRRRNDEKRQAQQEAKALNVEEQSVQ 705
 
Name Accession Description Interval E-value
YqiK COG2268
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
9-69 4.80e-04

Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];


Pssm-ID: 441869 [Multi-domain]  Cd Length: 439  Bit Score: 38.32  E-value: 4.80e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 921064237   9 EEERNEQIRKENERRfQQEQQRINNQRlhEINERNRIALERENARRRAEEKRKAEQKRKET 69
Cdd:COG2268  207 EAERETEIAIAQANR-EAEEAELEQER--EIETARIAEAEAELAKKKAEERREAETARAEA 264
SSM4 COG5183
E3 ubiquitin-protein ligase DOA10 [Posttranslational modification, protein turnover, ...
 5-92 4.31e-03

E3 ubiquitin-protein ligase DOA10 [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227510 [Multi-domain]  Cd Length: 1175  Bit Score: 35.70  E-value: 4.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 921064237    5 LGYLEEERNEQIRKENERRFQQEQQRINNQRLHEINERNRIALERENARRRAEEKR------KAEQKRKETSRTNTNVPP 78
Cdd:COG5183   196 LNQIFEKFGERLSDKDLMRRLRRRMLMNPRAILESISRESAQLERNTARQQGEHARengrdlSSDSNNNVINPVSDNVPS 275

                          90
                  ....*....|....
gi 921064237   79 SQPKNNRWSIGSNP 92
Cdd:COG5183   276 RDMNDSRNVENVRP 289
rne PRK10811
ribonuclease E; Reviewed
 10-77 6.41e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 35.02  E-value: 6.41e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 921064237   10 EERNEQIRkeNERRFQQEQQRINNQRLHEINERNRIALE------RENARRRAEEKRKAEQKRKETSRTNTNVP 77
Cdd:PRK10811  634 ENREENRR--NRRQAQQQTAETRESQQAEVTEKARTQDEqqqaprRERQRRRNDEKRQAQQEAKALNVEEQSVQ 705
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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