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Conserved domains on  [gi|919512196|ref|WP_052843484|]
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iron chelate uptake ABC transporter family permease subunit [Corynebacterium epidermidicanis]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10790899)

FecCD family ABC transporter permease is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

Gene Ontology:  GO:0140359|GO:0042626|GO:0006826|GO:0043190|GO:0016020
PubMed:  25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 3-322 7.57e-60

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 443810  Cd Length: 344  Bit Score: 194.95  E-value: 7.57e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   3 RYVWSSLLMLGLAAGGYLATLCVGAVFISPAHVVAVLNGGGPANVVNIIWELRLSVAIVTAVAGAALAIAGAWTQTIARN 82
Cdd:COG4779   21 RALLVTLVLLLLLLALAVLALTLGDYPLSPGDVLRALLGEGDPGASFVVLELRLPRALAALLVGAALGLSGAIFQSLTRN 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  83 PLASPDLLGVSGGASLAVVAATALTDVTNAWFRSGYALAGAVAMLALLLLLGRK-EPIDRLIIIGVALALFAQGAVSYLL 161
Cdd:COG4779  101 PLASPDIIGITAGASAGAVAAIVVLGGSGLAVALGALAGGLATALLVYLLAWRGgVSGYRLILVGIGVSAMLTAVNSYLL 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 162 LRADILRATEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLILAATGIV 241
Cdd:COG4779  181 TRADLEDAQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLLLVAVALA 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 242 AVVVSIVGPITFVALVAPQLARLIGHTPTPPVLLSALTGAALLLWCATIA--AALPVTAPVGLLTSALGGVMLVNLMMMQ 319
Cdd:COG4779  261 AVATAAAGPIAFVALAAPQIARRLTRSPGPPLLPSALVGALLLLAADLVAqhLLAPVQLPVGVVTGALGGPYLLWLLIRE 340


                 ...
gi 919512196 320 RTR 322
Cdd:COG4779  341 NRR 343
 
Name Accession Description Interval E-value
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 3-322 7.57e-60

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 194.95  E-value: 7.57e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   3 RYVWSSLLMLGLAAGGYLATLCVGAVFISPAHVVAVLNGGGPANVVNIIWELRLSVAIVTAVAGAALAIAGAWTQTIARN 82
Cdd:COG4779   21 RALLVTLVLLLLLLALAVLALTLGDYPLSPGDVLRALLGEGDPGASFVVLELRLPRALAALLVGAALGLSGAIFQSLTRN 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  83 PLASPDLLGVSGGASLAVVAATALTDVTNAWFRSGYALAGAVAMLALLLLLGRK-EPIDRLIIIGVALALFAQGAVSYLL 161
Cdd:COG4779  101 PLASPDIIGITAGASAGAVAAIVVLGGSGLAVALGALAGGLATALLVYLLAWRGgVSGYRLILVGIGVSAMLTAVNSYLL 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 162 LRADILRATEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLILAATGIV 241
Cdd:COG4779  181 TRADLEDAQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLLLVAVALA 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 242 AVVVSIVGPITFVALVAPQLARLIGHTPTPPVLLSALTGAALLLWCATIA--AALPVTAPVGLLTSALGGVMLVNLMMMQ 319
Cdd:COG4779  261 AVATAAAGPIAFVALAAPQIARRLTRSPGPPLLPSALVGALLLLAADLVAqhLLAPVQLPVGVVTGALGGPYLLWLLIRE 340


                 ...
gi 919512196 320 RTR 322
Cdd:COG4779  341 NRR 343
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 14-317 9.89e-47

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 160.00  E-value: 9.89e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   14 LAAGGYLATLCVGAVFISPAHVVAVLNGGGPANVVNIIWELRLSVAIVTAVAGAALAIAGAWTQTIARNPLASPDLLGVS 93
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLGGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   94 GGASLAVVAATALTDVTNAWFRSGYAL---AGAVAMLALLLLLGRKEPIDRLIIIGVALALFAQGAVSYLLLRADILRAT 170
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFigaLLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLLNPEALQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  171 EAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLILAATGIVAVVVSIVGP 250
Cdd:pfam01032 161 SILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGP 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  251 ITFVALVAPQLAR-LIGHTPTPPVLLSALTGAALLLWCATIAAAL--PVTAPVGLLTSALGGVMLVNLMM 317
Cdd:pfam01032 241 IGFVGLIVPHIARlLVGANHRRLLPLSALLGALLLLLADILARTIlsPYELPVGIVTALIGAPFFIYLLL 310
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
3-322 9.25e-33

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 128.03  E-value: 9.25e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   3 RYVWSSLLMLGLAAGGYLATLCVGAVFISPahvVAVLNGGGPANVVNIIWELRLSVAIVTAVAGAALAIAGAWTQTIARN 82
Cdd:PRK10577 348 AARRRRVLAWLLALGLLLLLALVVALSFGR---DAHGWNWLSGQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRN 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  83 PLASPDLLGVSGGASLAVVAATALTDVTNAWFRSGYALAGAVAMLALLLLLGRKEPI--DRLIIIGVALALFAQGAVSYL 160
Cdd:PRK10577 425 PLASPEVLGISSGAGLGVVLALFLVPGAGFGWLLAAALLGALAALALILLLARRGGFapERLLLTGIALSALFTALIQLL 504

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 161 LLRADiLRATEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLILAATGI 240
Cdd:PRK10577 505 LASGD-PRAAQLLTWLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALL 583

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 241 VAVVVSIVGPITFVALVAPQLARLIG-HTPTPPVLLSALTGAALLLWCATIA--AALPVTAPVGLLTSALGGVMLVNLMM 317
Cdd:PRK10577 584 TAAATATVGPLSFVGLMAPHLARMLGgRRARPQLVLAALLGALLMVLADWLGrtLLFPYQIPAGLLAALIGAPYFLWLLR 663


                 ....*
gi 919512196 318 MQRTR 322
Cdd:PRK10577 664 RSRRR 668
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 77-316 4.33e-24

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 98.78  E-value: 4.33e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  77 QTIARNPLASPDLLGVSGGASLAVVAATALTDVTNAWFRSGYALAGAVAMLALLLLLGRKEPID--RLIIIGVALALFAQ 154
Cdd:cd06550   19 QSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGGLSpsKLILIGIVLSAFFS 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 155 GAVSYLLLRADILrATEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLI 234
Cdd:cd06550   99 AGVILISLLSDDS-LQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDEDLAKSLGINVNLLRLLLL 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 235 LAATGIVAVVVSIVGPITFVALVAPQLAR-LIGHTPTPPVLLSALTGAALLLWCATIAAAL-PVTAPVGLLTSALGGVML 312
Cdd:cd06550  178 LLVALLVVAAVALVGVILFVGLIAPHLARrLFGRSHRYLLPLSALLGAILLLLGDLLSRTLlPSELPVGPVTALLGAPYF 257


                 ....
gi 919512196 313 VNLM 316
Cdd:cd06550  258 LYLL 261
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 50-320 4.44e-17

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 80.28  E-value: 4.44e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   50 IIWELRLSVAIVTAVAGAALAIAGAWTQTIARNPLASPDLLGVSGGASLAVVAATALTDVTNAWFRSGYALAGAVAMLAL 129
Cdd:TIGR03869  48 IVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVLGVAVLLPVAAFAGALLALAATLG 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  130 LLLLGRKEPIDRLIIIGVALALFAQGAVSYLLLRA---DILRatEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPH 206
Cdd:TIGR03869 128 LARTLGTLTPTRTILAGLAVSQLCAAVTSFVIFWSatgDSYR--EILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASG 205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  207 RDLRIVAHDDVTAIALGVRVQRTRLLLILAATGIVAVVVSIVGPITFVALVAPQLARLIGHTPTPPVL-LSALTGAALLL 285
Cdd:TIGR03869 206 RVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLpVSALAGAVFLV 285

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 919512196  286 WCATIAAAL--PVTAPVGLLTSALGGVMLVNLMMMQR 320
Cdd:TIGR03869 286 WADTLARTVfaPRELPVGIITALIGAPVFAVLLYRSR 322
 
Name Accession Description Interval E-value
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 3-322 7.57e-60

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 194.95  E-value: 7.57e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   3 RYVWSSLLMLGLAAGGYLATLCVGAVFISPAHVVAVLNGGGPANVVNIIWELRLSVAIVTAVAGAALAIAGAWTQTIARN 82
Cdd:COG4779   21 RALLVTLVLLLLLLALAVLALTLGDYPLSPGDVLRALLGEGDPGASFVVLELRLPRALAALLVGAALGLSGAIFQSLTRN 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  83 PLASPDLLGVSGGASLAVVAATALTDVTNAWFRSGYALAGAVAMLALLLLLGRK-EPIDRLIIIGVALALFAQGAVSYLL 161
Cdd:COG4779  101 PLASPDIIGITAGASAGAVAAIVVLGGSGLAVALGALAGGLATALLVYLLAWRGgVSGYRLILVGIGVSAMLTAVNSYLL 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 162 LRADILRATEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLILAATGIV 241
Cdd:COG4779  181 TRADLEDAQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLLLVAVALA 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 242 AVVVSIVGPITFVALVAPQLARLIGHTPTPPVLLSALTGAALLLWCATIA--AALPVTAPVGLLTSALGGVMLVNLMMMQ 319
Cdd:COG4779  261 AVATAAAGPIAFVALAAPQIARRLTRSPGPPLLPSALVGALLLLAADLVAqhLLAPVQLPVGVVTGALGGPYLLWLLIRE 340


                 ...
gi 919512196 320 RTR 322
Cdd:COG4779  341 NRR 343
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 14-317 9.89e-47

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 160.00  E-value: 9.89e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   14 LAAGGYLATLCVGAVFISPAHVVAVLNGGGPANVVNIIWELRLSVAIVTAVAGAALAIAGAWTQTIARNPLASPDLLGVS 93
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLGGDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   94 GGASLAVVAATALTDVTNAWFRSGYAL---AGAVAMLALLLLLGRKEPIDRLIIIGVALALFAQGAVSYLLLRADILRAT 170
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFigaLLAALLVYFLSRGRGGASPLRLILAGIAVSALLSALTSLLLLLLNPEALQ 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  171 EAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLILAATGIVAVVVSIVGP 250
Cdd:pfam01032 161 SILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGP 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  251 ITFVALVAPQLAR-LIGHTPTPPVLLSALTGAALLLWCATIAAAL--PVTAPVGLLTSALGGVMLVNLMM 317
Cdd:pfam01032 241 IGFVGLIVPHIARlLVGANHRRLLPLSALLGALLLLLADILARTIlsPYELPVGIVTALIGAPFFIYLLL 310
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 23-320 6.10e-45

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 155.23  E-value: 6.10e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  23 LCVGAVFISPAHVV-AVLNGGGPANVVNIIWELRLSVAIVTAVAGAALAIAGAWTQTIARNPLASPDLLGVSGGASLAVV 101
Cdd:COG0609    2 LSLGAVPISLSDVLrALLGPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGAV 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 102 AATALTDVTNAWFRSGYALAGAVAMLALLLLLGRKE---PIDRLIIIGVALALFAQGAVSYLLLRADILRATEAQVWLAG 178
Cdd:COG0609   82 LAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGgglSPLRLVLAGVAVSALFSALTSLLLLLADPEQLRSIVFWLMG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 179 STAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLILAATGIVAVVVSIVGPITFVALVA 258
Cdd:COG0609  162 SLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLVV 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 919512196 259 PQLAR-LIGHTPTPPVLLSALTGAALLLWCATIA--AALPVTAPVGLLTSALGGVMLVNLMMMQR 320
Cdd:COG0609  242 PHIARlLVGPDHRRLLPASALLGALLLLLADTLArtILAPAELPVGIVTALIGAPFFLYLLRRRR 306
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
3-322 9.25e-33

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 128.03  E-value: 9.25e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   3 RYVWSSLLMLGLAAGGYLATLCVGAVFISPahvVAVLNGGGPANVVNIIWELRLSVAIVTAVAGAALAIAGAWTQTIARN 82
Cdd:PRK10577 348 AARRRRVLAWLLALGLLLLLALVVALSFGR---DAHGWNWLSGQLLDALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRN 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  83 PLASPDLLGVSGGASLAVVAATALTDVTNAWFRSGYALAGAVAMLALLLLLGRKEPI--DRLIIIGVALALFAQGAVSYL 160
Cdd:PRK10577 425 PLASPEVLGISSGAGLGVVLALFLVPGAGFGWLLAAALLGALAALALILLLARRGGFapERLLLTGIALSALFTALIQLL 504

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 161 LLRADiLRATEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLILAATGI 240
Cdd:PRK10577 505 LASGD-PRAAQLLTWLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALL 583

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 241 VAVVVSIVGPITFVALVAPQLARLIG-HTPTPPVLLSALTGAALLLWCATIA--AALPVTAPVGLLTSALGGVMLVNLMM 317
Cdd:PRK10577 584 TAAATATVGPLSFVGLMAPHLARMLGgRRARPQLVLAALLGALLMVLADWLGrtLLFPYQIPAGLLAALIGAPYFLWLLR 663


                 ....*
gi 919512196 318 MQRTR 322
Cdd:PRK10577 664 RSRRR 668
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
3-322 6.23e-32

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 121.36  E-value: 6.23e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   3 RYVWSSLLMLGLAAGGYLATLCVGAVFISPAHVVAVLNGGGPANVVNIIWELRLSVAIVTAVAGAALAIAGAWTQTIARN 82
Cdd:PRK10440   7 RLLITCLLLLAACVAAGLWGLRSGAVTLETSQVFAALMGDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRN 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  83 PLASPDLLGVSGGASLAVVAATALTDVTNAWFRSGYALAGAVAMLALLLLLGRKE-PIDRLIIIGVALALFAQGAVSYLL 161
Cdd:PRK10440  87 PLGSPDVMGFNTGAWSGVLVAMVLFGQDLTAIALAAMAGGIVTSLLVWLLAWRNGiDTFRLIIIGIGVRAMLVAFNTWLL 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 162 LRADILRATEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLILAATGIV 241
Cdd:PRK10440 167 LKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLMLVAVVLT 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 242 AVVVSIVGPITFVALVAPQLARLIGHTPTPPVLLSALTGAALLLWCATIAAAL--PVTAPVGLLTSALGGVMLVNLMMMQ 319
Cdd:PRK10440 247 AAATALAGPISFIALVAPHIARRLSGTARWGLTQAALCGALLLLAADLCAQQLfmPYQLPVGVVTVSLGGIYLIVLLIQE 326


                 ...
gi 919512196 320 RTR 322
Cdd:PRK10440 327 SRK 329
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
77-322 2.20e-25

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 106.46  E-value: 2.20e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  77 QTIARNPLASPDLLGVSGGASLAVVAATALTDVTNAWFRSGYALA--GAVAMLALLLLLGRKEPIDRLIIIGVALALFAq 154
Cdd:PRK10577  84 QQVLRNPLASPTTLGVAAGAQLALVLATLFAPALLALASQLAAFAggLLAAALVFALAGGKRLSPLRLVLAGMVVSLYL- 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 155 GAVSYLLLRADILRATEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLI 234
Cdd:PRK10577 163 GALTTLLLLFNEQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAAL 242

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 235 LAATGIVAVVVSIVGPITFVALVAPQLARLIG-HTPTPPVLLSALTGAALLLWCATIAAAL----PVTAPVGLLTSALGG 309
Cdd:PRK10577 243 ALAVLLSAAVVSAVGPIGFIGLAAPNLARLLGaRRLRARLPLSPLIGALLLLLTDQLVRLLagvgGELLPTGAVTALIGA 322

                        250
                 ....*....|...
gi 919512196 310 VMLVNLMMMQRTR 322
Cdd:PRK10577 323 PLLLWLLPRLRSA 335
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 77-316 4.33e-24

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 98.78  E-value: 4.33e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  77 QTIARNPLASPDLLGVSGGASLAVVAATALTDVTNAWFRSGYALAGAVAMLALLLLLGRKEPID--RLIIIGVALALFAQ 154
Cdd:cd06550   19 QSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGGLSpsKLILIGIVLSAFFS 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 155 GAVSYLLLRADILrATEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLI 234
Cdd:cd06550   99 AGVILISLLSDDS-LQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDEDLAKSLGINVNLLRLLLL 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 235 LAATGIVAVVVSIVGPITFVALVAPQLAR-LIGHTPTPPVLLSALTGAALLLWCATIAAAL-PVTAPVGLLTSALGGVML 312
Cdd:cd06550  178 LLVALLVVAAVALVGVILFVGLIAPHLARrLFGRSHRYLLPLSALLGAILLLLGDLLSRTLlPSELPVGPVTALLGAPYF 257


                 ....
gi 919512196 313 VNLM 316
Cdd:cd06550  258 LYLL 261
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
8-308 5.90e-22

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 93.99  E-value: 5.90e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   8 SLLMLGLAAGGYLATLCVGAVFISPAHVV-AVLNGGGPANVVNIIWELRLSVAIVTAVAGAALAIAGAWTQTIARNPLAS 86
Cdd:PRK11228   3 GLPVAALIGLFWLSLFCYSAIPISAADALnALLPGHTPTLPEALVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLAS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  87 PDLLGVSGGASLAVVAATALtdvtNAWFRSGYALAGAVA-------MLALLLLLGRKEPIDR--LIIIGVALALFAQGAV 157
Cdd:PRK11228  83 PSLLGINSGAALAMALTSAL----SPTPFAGYSLAFIAAcggglswLLVMTAGGGWRHTHDRnrLILAGIALSALCMALT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 158 SYLLLRADIlRATEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLILAA 237
Cdd:PRK11228 159 RITLLLAED-HAYGIFYWLAGGVSHARWQEVWQLLPFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLV 237

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 919512196 238 TGIVAVVVSIVGPITFVALVAPQLARL-IGHTPTPPVLLSALTGAALLLWCATIAAAL--PVTAPVGLLTSALG 308
Cdd:PRK11228 238 LLLVGACVSVAGPVAFIGLLVPHLARFwIGYDQRNVLPMSMLLGATLMLLADLLARALafPGELPAGAVLALIG 311
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
77-320 3.70e-19

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 86.25  E-value: 3.70e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  77 QTIARNPLASPDLLGVSGGASLAVVAA-TALTDVTNAWFRSGYALAGAVAMLALLLLLGRKEPIdRLIIIGVALALFAQG 155
Cdd:PRK09777  73 QGIVRNPLASPDILGVNHAASLASVGAlLLFPSLPVMWLPLLAFIGGMAGLILLKMLAGTHQPM-KLALTGVALSALWAS 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 156 AVSYLLLrADILRATEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLIL 235
Cdd:PRK09777 152 LTDYLML-SRPQDINNALLWLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALL 230

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 236 AATGIVAVVVSIVGPITFVALVAPQLAR-LIGHTPTPPVLLSALTGAALLLWCATIAAAL--PVTAPVGLLTSALGGVML 312
Cdd:PRK09777 231 LAVALTATGVAACGPISFIGLVVPHLMRsLVGGRHRRLLPVSALTGALLLLLADLLARIIhpPLELPAGVLTAIIGAPWF 310


                 ....*...
gi 919512196 313 VNLMMMQR 320
Cdd:PRK09777 311 FWLLVRMR 318
btuC PRK09535
cobalamin ABC transporter permease BtuC;
77-308 2.04e-18

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 84.80  E-value: 2.04e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  77 QTIARNPLASPDLLGVSGGASLAVVAATALTDVTNAWFRSGYALAGAVAMLALLLLLGR--KEPIDRLIIIGVALALFAQ 154
Cdd:PRK09535 117 QGFFRNPMADPSIIGVSSGAAVGAVAAIVLPLAVPFGLQAAAFAGALVAAFGVYAIATEngRTPVATLLLAGVAVQTFLG 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 155 GAVSYLLLRA-DILRatEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLL 233
Cdd:PRK09535 197 AVISYLLLHSgESLR--RAVYWLMGHLHGSTWSDVEVALPVVVVGFVVLLAYARDLNVLLLGEEDAHTLGIEVERTKRLL 274

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 919512196 234 ILAATGIVAVVVSIVGPITFVALVAPQLARLIgHTPTPPVLL--SALTGAALLLWCATIAAALPVTAPVGLLTSALG 308
Cdd:PRK09535 275 LALASVVTAAAVAVAGVIGFVGLIVPHVMRLL-VGPDHRILLptSALAGASFLVATDTVARSGPAEVPVGIVTAALG 350
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 9-308 7.02e-18

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 82.70  E-value: 7.02e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   9 LLMLGLAAGGYLATLCVGAVFISPAHVVAVLNGggpanvvNIIWELRLSVAIVTAVAGAALAIAGAWTQTIARNPLASPD 88
Cdd:PRK03784  19 LGLSVLLLLALLLSLCAGEQWISPGDWLSPRGE-------LFVWQLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPG 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  89 LLGVSGGASLAVVAATALTDVTNA-WFRSGYALAGAVAMLALLLLLGRKEPID--RLIIIGVALALFAQGAVSYLLLRAD 165
Cdd:PRK03784  92 LLGVSNGAGVALVAAVLLGQGLLPpWALSLCAIAGALLITLILLRFARRHRLStsRLLLAGVALGIICSALMTWAVYFST 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 166 ILRATEAQVWLAGSTAFARWE---VVLPLLIGLLVFVLLglspHRDLRIVAHDDVTAIALGVRVQRTRLLLILAATGIVA 242
Cdd:PRK03784 172 SLDLRQLMYWMMGGFGGVDWRqswLMLALLPVLIWLCCQ----GRPLNMLALGEISARQLGLPLWFWRNLLVLATGWLVG 247

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 919512196 243 VVVSIVGPITFVALVAPQLARLIGHTPTPPVL-LSALTGAALLLWCATIAAALPVTA--PVGLLTSALG 308
Cdd:PRK03784 248 VSVALAGAIGFIGLVIPHILRLCGLTDHRVLLpGCALAGASLLLLADIVARLALASAelPIGVVTATLG 316
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
 50-320 4.44e-17

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 80.28  E-value: 4.44e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   50 IIWELRLSVAIVTAVAGAALAIAGAWTQTIARNPLASPDLLGVSGGASLAVVAATALTDVTNAWFRSGYALAGAVAMLAL 129
Cdd:TIGR03869  48 IVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVLGVAVLLPVAAFAGALLALAATLG 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  130 LLLLGRKEPIDRLIIIGVALALFAQGAVSYLLLRA---DILRatEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPH 206
Cdd:TIGR03869 128 LARTLGTLTPTRTILAGLAVSQLCAAVTSFVIFWSatgDSYR--EILSWLMGSLAGATWGSVAIAGGALLVVGLVLLASG 205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  207 RDLRIVAHDDVTAIALGVRVQRTRLLLILAATGIVAVVVSIVGPITFVALVAPQLARLIGHTPTPPVL-LSALTGAALLL 285
Cdd:TIGR03869 206 RVLDAFAFGDSSAAALGVDVERTRWLLLTLVALLTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLpVSALAGAVFLV 285

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 919512196  286 WCATIAAAL--PVTAPVGLLTSALGGVMLVNLMMMQR 320
Cdd:TIGR03869 286 WADTLARTVfaPRELPVGIITALIGAPVFAVLLYRSR 322
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
8-320 1.72e-12

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 67.04  E-value: 1.72e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196   8 SLLMLGLAAggyLATLCVGAVFISPAHVVAVLNGGGPANVVNIIWELRLSVAIVTAVAGAALAIAGAWTQTIARNPLASP 87
Cdd:PRK10441  16 LLLLLIIAT---ALSLLIGAKSLPASVVLEALSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADP 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196  88 DLLGVSGGASLAVVAATALTDVTN-----AWFRSGYALAGAVAMLALLLLLGRKEPIdRLIIIGVALALFAQGAVSYL-L 161
Cdd:PRK10441  93 GLLGVNAGASFAIVLGAALFGYSSaqeqlAMAFAGALVASLIVAFTGSQGGGQLSPV-RLTLAGVALAAVLEGLTSGIaL 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 162 LRADILraTEAQVWLAGSTAFARWEVVLPLLIGLLVFVLLGLSPHRDLRIVAHDDVTAIALGVRVQRTRLLLILAATGIV 241
Cdd:PRK10441 172 LNPDVY--DQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLC 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 919512196 242 AVVVSIVGPITFVALVAPQLARLIGHTPTPPVLLSALTGAALLLWCATIAAALPVTAP--VGLLTSALGGVMLVNLMMMQ 319
Cdd:PRK10441 250 GSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLVPGElrVSVVSAFIGAPVLIFLVRRK 329


                 .
gi 919512196 320 R 320
Cdd:PRK10441 330 T 330
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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