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Conserved domains on  [gi|918740030|ref|WP_052593447|]
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peptidoglycan-binding protein [Luteipulveratus mongoliensis]

Protein Classification

peptidoglycan-binding domain-containing protein( domain architecture ID 11465558)

peptidoglycan-binding domain-containing protein may function as a peptidoglycan hydrolase

CATH:  1.10.101.10
Gene Ontology:  GO:0042834
SCOP:  3001357

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 202-267 2.52e-08

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 49.91  E-value: 2.52e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 918740030 202 TLSIGCTGYGVQACQWLLNhqTRG-SRLDMDGVFGTGTYMVVRDAQRRLGMLEDGVVDAALWFRLLA 267
Cdd:COG3409    5 TLRLGDSGEDVRELQQRLN--ALGyYPGPVDGIFGPATEAAVRAFQRANGLPVDGIVGPATWAALRA 69
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 161-197 7.22e-05

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 39.89  E-value: 7.22e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 918740030 161 EADGVLGPQTRAAILNFQRNHERPATGALAEDDWRIL 197
Cdd:COG3409   31 PVDGIFGPATEAAVRAFQRANGLPVDGIVGPATWAAL 67
 
Name Accession Description Interval E-value
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 202-267 2.52e-08

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 49.91  E-value: 2.52e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 918740030 202 TLSIGCTGYGVQACQWLLNhqTRG-SRLDMDGVFGTGTYMVVRDAQRRLGMLEDGVVDAALWFRLLA 267
Cdd:COG3409    5 TLRLGDSGEDVRELQQRLN--ALGyYPGPVDGIFGPATEAAVRAFQRANGLPVDGIVGPATWAALRA 69
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 161-197 7.22e-05

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 39.89  E-value: 7.22e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 918740030 161 EADGVLGPQTRAAILNFQRNHERPATGALAEDDWRIL 197
Cdd:COG3409   31 PVDGIFGPATEAAVRAFQRANGLPVDGIVGPATWAAL 67
PG_binding_1 pfam01471
Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This ...
 231-262 1.19e-04

Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.


Pssm-ID: 460223 [Multi-domain]  Cd Length: 57  Bit Score: 39.04  E-value: 1.19e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 918740030  231 DGVFGTGTYMVVRDAQRRLGMLEDGVVDAALW 262
Cdd:pfam01471  23 DGYFGPSTEAAVKAFQRAFGLPVDGIVDPETL 54
PG_binding_1 pfam01471
Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This ...
 146-187 4.13e-04

Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.


Pssm-ID: 460223 [Multi-domain]  Cd Length: 57  Bit Score: 37.49  E-value: 4.13e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 918740030  146 ISTAQLMLREY-NGSLEADGVLGPQTRAAILNFQRNHERPATG 187
Cdd:pfam01471   5 VKELQRYLNRLgYYPGPVDGYFGPSTEAAVKAFQRAFGLPVDG 47
 
Name Accession Description Interval E-value
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 202-267 2.52e-08

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 49.91  E-value: 2.52e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 918740030 202 TLSIGCTGYGVQACQWLLNhqTRG-SRLDMDGVFGTGTYMVVRDAQRRLGMLEDGVVDAALWFRLLA 267
Cdd:COG3409    5 TLRLGDSGEDVRELQQRLN--ALGyYPGPVDGIFGPATEAAVRAFQRANGLPVDGIVGPATWAALRA 69
PGRP COG3409
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope ...
 161-197 7.22e-05

Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442635 [Multi-domain]  Cd Length: 69  Bit Score: 39.89  E-value: 7.22e-05
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 918740030 161 EADGVLGPQTRAAILNFQRNHERPATGALAEDDWRIL 197
Cdd:COG3409   31 PVDGIFGPATEAAVRAFQRANGLPVDGIVGPATWAAL 67
PG_binding_1 pfam01471
Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This ...
 231-262 1.19e-04

Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.


Pssm-ID: 460223 [Multi-domain]  Cd Length: 57  Bit Score: 39.04  E-value: 1.19e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 918740030  231 DGVFGTGTYMVVRDAQRRLGMLEDGVVDAALW 262
Cdd:pfam01471  23 DGYFGPSTEAAVKAFQRAFGLPVDGIVDPETL 54
PG_binding_1 pfam01471
Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This ...
 146-187 4.13e-04

Putative peptidoglycan binding domain; This domain is composed of three alpha helices. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.


Pssm-ID: 460223 [Multi-domain]  Cd Length: 57  Bit Score: 37.49  E-value: 4.13e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 918740030  146 ISTAQLMLREY-NGSLEADGVLGPQTRAAILNFQRNHERPATG 187
Cdd:pfam01471   5 VKELQRYLNRLgYYPGPVDGYFGPSTEAAVKAFQRAFGLPVDG 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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