NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|914618975|ref|WP_050610812|]
View 

DUF948 domain-containing protein [Ligilactobacillus agilis]

Protein Classification

DUF948 domain-containing protein( domain architecture ID 10008827)

uncharacterized DUF948 domain-containing protein similar to Bacillus subtilis YtxG, may be involved in stress response

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG4768 COG4768
Uncharacterized conserved protein YoxC, contains an MCP-like domain [Function unknown];
4-134 7.77e-40

Uncharacterized conserved protein YoxC, contains an MCP-like domain [Function unknown];


:

Pssm-ID: 443800 [Multi-domain]  Cd Length: 132  Bit Score: 129.97  E-value: 7.77e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 914618975   4 TFGQLAGLIAAGAFLILVIALCFVLKGLIKTLEETTKSIGAVTEDINGISKELEQLVNKTNTLMDDVNQKSAKLDPLFET 83
Cdd:COG4768    1 IILYIAALIIAIAFLVLVIYLVKTLKKVKKTLNEVNKTLEGLEKQLDGITTETTDLLHKTNRLAEDVNGKVEKLDPLFDA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 914618975  84 MAELSESVSDLNAASRNVAERVSGSA-KAATQASMAFRLGKQALKFYNKHKK 134
Cdd:COG4768   81 VKDVGESVSDLNSSLRDVTSSVSSKVeKNSEKVAQVVKWGKVALGLFKKKKK 132
 
Name Accession Description Interval E-value
COG4768 COG4768
Uncharacterized conserved protein YoxC, contains an MCP-like domain [Function unknown];
4-134 7.77e-40

Uncharacterized conserved protein YoxC, contains an MCP-like domain [Function unknown];


Pssm-ID: 443800 [Multi-domain]  Cd Length: 132  Bit Score: 129.97  E-value: 7.77e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 914618975   4 TFGQLAGLIAAGAFLILVIALCFVLKGLIKTLEETTKSIGAVTEDINGISKELEQLVNKTNTLMDDVNQKSAKLDPLFET 83
Cdd:COG4768    1 IILYIAALIIAIAFLVLVIYLVKTLKKVKKTLNEVNKTLEGLEKQLDGITTETTDLLHKTNRLAEDVNGKVEKLDPLFDA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 914618975  84 MAELSESVSDLNAASRNVAERVSGSA-KAATQASMAFRLGKQALKFYNKHKK 134
Cdd:COG4768   81 VKDVGESVSDLNSSLRDVTSSVSSKVeKNSEKVAQVVKWGKVALGLFKKKKK 132
DUF948 pfam06103
Bacterial protein of unknown function (DUF948); This family consists of bacterial sequences ...
 8-90 1.85e-27

Bacterial protein of unknown function (DUF948); This family consists of bacterial sequences several of which are thought to be general stress proteins.


Pssm-ID: 428770 [Multi-domain]  Cd Length: 83  Bit Score: 97.22  E-value: 1.85e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 914618975    8 LAGLIAAGAFLILVIALCFVLKGLIKTLEETTKSIGAVTEDINGISKELEQLVNKTNTLMDDVNQKSAKLDPLFETMAEL 87
Cdd:pfam06103   1 IAGLIAAIAFVVLVIFLIPTLKKLGKTLDEVRKTIEGLEKQVDPILKETTDLLAKTNELLEDVNGKLEKVDPVFEAVADL 80


                  ...
gi 914618975   88 SES 90
Cdd:pfam06103  81 GES 83
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 31-128 7.81e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 35.42  E-value: 7.81e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 914618975    31 LIKTLEETTKSIGAVTEDINGISKELEQLVNKTNTLMDDVNQKSAKLDPLFETMAELSESVSDLNAASRNVAERVS---G 107
Cdd:TIGR02168  836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSelrR 915

                           90       100
                   ....*....|....*....|.
gi 914618975   108 SAKAATQASMAFRLGKQALKF 128
Cdd:TIGR02168  916 ELEELREKLAQLELRLEGLEV 936
 
Name Accession Description Interval E-value
COG4768 COG4768
Uncharacterized conserved protein YoxC, contains an MCP-like domain [Function unknown];
4-134 7.77e-40

Uncharacterized conserved protein YoxC, contains an MCP-like domain [Function unknown];


Pssm-ID: 443800 [Multi-domain]  Cd Length: 132  Bit Score: 129.97  E-value: 7.77e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 914618975   4 TFGQLAGLIAAGAFLILVIALCFVLKGLIKTLEETTKSIGAVTEDINGISKELEQLVNKTNTLMDDVNQKSAKLDPLFET 83
Cdd:COG4768    1 IILYIAALIIAIAFLVLVIYLVKTLKKVKKTLNEVNKTLEGLEKQLDGITTETTDLLHKTNRLAEDVNGKVEKLDPLFDA 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 914618975  84 MAELSESVSDLNAASRNVAERVSGSA-KAATQASMAFRLGKQALKFYNKHKK 134
Cdd:COG4768   81 VKDVGESVSDLNSSLRDVTSSVSSKVeKNSEKVAQVVKWGKVALGLFKKKKK 132
DUF948 pfam06103
Bacterial protein of unknown function (DUF948); This family consists of bacterial sequences ...
 8-90 1.85e-27

Bacterial protein of unknown function (DUF948); This family consists of bacterial sequences several of which are thought to be general stress proteins.


Pssm-ID: 428770 [Multi-domain]  Cd Length: 83  Bit Score: 97.22  E-value: 1.85e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 914618975    8 LAGLIAAGAFLILVIALCFVLKGLIKTLEETTKSIGAVTEDINGISKELEQLVNKTNTLMDDVNQKSAKLDPLFETMAEL 87
Cdd:pfam06103   1 IAGLIAAIAFVVLVIFLIPTLKKLGKTLDEVRKTIEGLEKQVDPILKETTDLLAKTNELLEDVNGKLEKVDPVFEAVADL 80


                  ...
gi 914618975   88 SES 90
Cdd:pfam06103  81 GES 83
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 31-128 7.81e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 35.42  E-value: 7.81e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 914618975    31 LIKTLEETTKSIGAVTEDINGISKELEQLVNKTNTLMDDVNQKSAKLDPLFETMAELSESVSDLNAASRNVAERVS---G 107
Cdd:TIGR02168  836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSelrR 915

                           90       100
                   ....*....|....*....|.
gi 914618975   108 SAKAATQASMAFRLGKQALKF 128
Cdd:TIGR02168  916 ELEELREKLAQLELRLEGLEV 936
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH