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Conserved domains on  [gi|913453430|ref|WP_050432839|]
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MopE-related protein [Chondromyces crocatus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 121-462 9.95e-103

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 320.39  E-value: 9.95e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 121 DVAAGVGHTLYLRSDGSVWAWGQNNEGQLGkPPSVTPSAVPSQVASLPRIKAIAAGGFHALALDVSGHLWAWGQNSQGQL 200
Cdd:COG5184    2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLG-DGTTTDRSTPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 201 GTGTTTAPPsAPVQVtiPGAAALTAVAAGNQYSMALDAAGTVWVWGNNTYGQSGTGTVgGSTLVPAAVSI-VGGAKAIAA 279
Cdd:COG5184   81 GDGTTTDRT-TPVKV--PGLTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTT-TNRLTPVQVDAgLSGVVAIAA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 280 GWYHALAVSTTGAVWTWGRNNHGQIGNGSssaSVHQPTPYAVALSGPVSLVAGGGNHSLALHASGAVHSWGQNAQGQLGL 359
Cdd:COG5184  157 GGYHTCALKSDGTVWCWGANSYGQLGDGT---TTDRPTPVQVGGLSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGD 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 360 GhTTSPVSTPQQIPFLGDASLIAAGNAFSLVLSGpSGQVLSFGQNNFGQLGDETTANRPSPVSTPHLTQVIGLSAGANHG 439
Cdd:COG5184  234 G-TTTDRATPVQVAGLTGVVAIAAGGSHTCALKS-DGTVWCWGDNSYGQLGDGTTTDRSTPVKVPGLSGVVAVAAGSSHT 311

                        330       340
                 ....*....|....*....|...
gi 913453430 440 VALSSGCPVWAWGQNTQGQLGLG 462
Cdd:COG5184  312 CALLTDGTVWCWGDNAYGQLGDG 334
Cu-binding_MopE pfam11617
Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other ...
 690-718 2.02e-06

Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other sequence either in UniProt or in NCBI (Sep2014). The model is of a short repeat not found on the G1UBC6 - 2vov - protein. The presence of conserved cysteine residues and the lack of hydrophobic residues suggests that this repeat might be a metal-binding site, perhaps for zinc or calcium ions.


:

Pssm-ID: 463309 [Multi-domain]  Cd Length: 28  Bit Score: 44.79  E-value: 2.02e-06
                          10        20
                  ....*....|....*....|....*....
gi 913453430  690 DCDDTRSQRRPNMAEVCgDGLDNDCDGVV 718
Cdd:pfam11617   1 DCDDSDPAIHPGAAEIC-DGIDNNCDGVV 28
Cu-binding_MopE pfam11617
Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other ...
 518-539 5.73e-04

Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other sequence either in UniProt or in NCBI (Sep2014). The model is of a short repeat not found on the G1UBC6 - 2vov - protein. The presence of conserved cysteine residues and the lack of hydrophobic residues suggests that this repeat might be a metal-binding site, perhaps for zinc or calcium ions.


:

Pssm-ID: 463309 [Multi-domain]  Cd Length: 28  Bit Score: 37.86  E-value: 5.73e-04
                          10        20
                  ....*....|....*....|..
gi 913453430  518 PAISPDADELCNGLDDDCDGEI 539
Cdd:pfam11617   7 PAIHPGAAEICDGIDNNCDGVV 28
Cu-binding_MopE pfam11617
Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other ...
 580-594 9.34e-03

Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other sequence either in UniProt or in NCBI (Sep2014). The model is of a short repeat not found on the G1UBC6 - 2vov - protein. The presence of conserved cysteine residues and the lack of hydrophobic residues suggests that this repeat might be a metal-binding site, perhaps for zinc or calcium ions.


:

Pssm-ID: 463309 [Multi-domain]  Cd Length: 28  Bit Score: 34.39  E-value: 9.34e-03
                          10
                  ....*....|....*
gi 913453430  580 AEVCDGLDNDCNGVV 594
Cdd:pfam11617  14 AEICDGIDNNCDGVV 28
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 121-462 9.95e-103

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 320.39  E-value: 9.95e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 121 DVAAGVGHTLYLRSDGSVWAWGQNNEGQLGkPPSVTPSAVPSQVASLPRIKAIAAGGFHALALDVSGHLWAWGQNSQGQL 200
Cdd:COG5184    2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLG-DGTTTDRSTPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 201 GTGTTTAPPsAPVQVtiPGAAALTAVAAGNQYSMALDAAGTVWVWGNNTYGQSGTGTVgGSTLVPAAVSI-VGGAKAIAA 279
Cdd:COG5184   81 GDGTTTDRT-TPVKV--PGLTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTT-TNRLTPVQVDAgLSGVVAIAA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 280 GWYHALAVSTTGAVWTWGRNNHGQIGNGSssaSVHQPTPYAVALSGPVSLVAGGGNHSLALHASGAVHSWGQNAQGQLGL 359
Cdd:COG5184  157 GGYHTCALKSDGTVWCWGANSYGQLGDGT---TTDRPTPVQVGGLSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGD 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 360 GhTTSPVSTPQQIPFLGDASLIAAGNAFSLVLSGpSGQVLSFGQNNFGQLGDETTANRPSPVSTPHLTQVIGLSAGANHG 439
Cdd:COG5184  234 G-TTTDRATPVQVAGLTGVVAIAAGGSHTCALKS-DGTVWCWGDNSYGQLGDGTTTDRSTPVKVPGLSGVVAVAAGSSHT 311

                        330       340
                 ....*....|....*....|...
gi 913453430 440 VALSSGCPVWAWGQNTQGQLGLG 462
Cdd:COG5184  312 CALLTDGTVWCWGDNAYGQLGDG 334
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
135-183 6.92e-09

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 52.13  E-value: 6.92e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 913453430  135 DGSVWAWGQNNEGQLGKPPSVTpSAVPSQVASLP--RIKAIAAGGFHALAL 183
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTEN-VLVPQKVEGLSgnKVVQVACGGDHTVAL 50
Cu-binding_MopE pfam11617
Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other ...
 690-718 2.02e-06

Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other sequence either in UniProt or in NCBI (Sep2014). The model is of a short repeat not found on the G1UBC6 - 2vov - protein. The presence of conserved cysteine residues and the lack of hydrophobic residues suggests that this repeat might be a metal-binding site, perhaps for zinc or calcium ions.


Pssm-ID: 463309 [Multi-domain]  Cd Length: 28  Bit Score: 44.79  E-value: 2.02e-06
                          10        20
                  ....*....|....*....|....*....
gi 913453430  690 DCDDTRSQRRPNMAEVCgDGLDNDCDGVV 718
Cdd:pfam11617   1 DCDDSDPAIHPGAAEIC-DGIDNNCDGVV 28
Cu-binding_MopE pfam11617
Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other ...
 518-539 5.73e-04

Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other sequence either in UniProt or in NCBI (Sep2014). The model is of a short repeat not found on the G1UBC6 - 2vov - protein. The presence of conserved cysteine residues and the lack of hydrophobic residues suggests that this repeat might be a metal-binding site, perhaps for zinc or calcium ions.


Pssm-ID: 463309 [Multi-domain]  Cd Length: 28  Bit Score: 37.86  E-value: 5.73e-04
                          10        20
                  ....*....|....*....|..
gi 913453430  518 PAISPDADELCNGLDDDCDGEI 539
Cdd:pfam11617   7 PAIHPGAAEICDGIDNNCDGVV 28
Cu-binding_MopE pfam11617
Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other ...
 580-594 9.34e-03

Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other sequence either in UniProt or in NCBI (Sep2014). The model is of a short repeat not found on the G1UBC6 - 2vov - protein. The presence of conserved cysteine residues and the lack of hydrophobic residues suggests that this repeat might be a metal-binding site, perhaps for zinc or calcium ions.


Pssm-ID: 463309 [Multi-domain]  Cd Length: 28  Bit Score: 34.39  E-value: 9.34e-03
                          10
                  ....*....|....*
gi 913453430  580 AEVCDGLDNDCNGVV 594
Cdd:pfam11617  14 AEICDGIDNNCDGVV 28
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 121-462 9.95e-103

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 320.39  E-value: 9.95e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 121 DVAAGVGHTLYLRSDGSVWAWGQNNEGQLGkPPSVTPSAVPSQVASLPRIKAIAAGGFHALALDVSGHLWAWGQNSQGQL 200
Cdd:COG5184    2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLG-DGTTTDRSTPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 201 GTGTTTAPPsAPVQVtiPGAAALTAVAAGNQYSMALDAAGTVWVWGNNTYGQSGTGTVgGSTLVPAAVSI-VGGAKAIAA 279
Cdd:COG5184   81 GDGTTTDRT-TPVKV--PGLTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTT-TNRLTPVQVDAgLSGVVAIAA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 280 GWYHALAVSTTGAVWTWGRNNHGQIGNGSssaSVHQPTPYAVALSGPVSLVAGGGNHSLALHASGAVHSWGQNAQGQLGL 359
Cdd:COG5184  157 GGYHTCALKSDGTVWCWGANSYGQLGDGT---TTDRPTPVQVGGLSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGD 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 360 GhTTSPVSTPQQIPFLGDASLIAAGNAFSLVLSGpSGQVLSFGQNNFGQLGDETTANRPSPVSTPHLTQVIGLSAGANHG 439
Cdd:COG5184  234 G-TTTDRATPVQVAGLTGVVAIAAGGSHTCALKS-DGTVWCWGDNSYGQLGDGTTTDRSTPVKVPGLSGVVAVAAGSSHT 311

                        330       340
                 ....*....|....*....|...
gi 913453430 440 VALSSGCPVWAWGQNTQGQLGLG 462
Cdd:COG5184  312 CALLTDGTVWCWGDNAYGQLGDG 334
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 103-421 1.82e-88

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 283.02  E-value: 1.82e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 103 RPAPTQAlslgPGGSPREDVAAGVGHTLYLRSDGSVWAWGQNNEGQLGkPPSVTPSAVPSQVASLPRIKAIAAGGFHALA 182
Cdd:COG5184   38 RSTPVRV----PGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLG-DGTTTDRTTPVKVPGLTGVVAVAAGYYHSCA 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 183 LDVSGHLWAWGQNSQGQLGTGTTTaPPSAPVQVTiPGAAALTAVAAGNQYSMALDAAGTVWVWGNNTYGQSGTGTVGGST 262
Cdd:COG5184  113 LKSDGTVWCWGDNSSGQLGDGTTT-NRLTPVQVD-AGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRP 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 913453430 263 lVPAAVSIVGGAKAIAAGWYHALAVSTTGAVWTWGRNNHGQIGNGSSSASvhqPTPYAVALSGPVSLVAGGGNHSLALHA 342
Cdd:COG5184  191 -TPVQVGGLSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDR---ATPVQVAGLTGVVAIAAGGSHTCALKS 266

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 913453430 343 SGAVHSWGQNAQGQLGLGhTTSPVSTPQQIPFLGDASLIAAGNAFSLVLSGpSGQVLSFGQNNFGQLGDETTANRPSPV 421
Cdd:COG5184  267 DGTVWCWGDNSYGQLGDG-TTTDRSTPVKVPGLSGVVAVAAGSSHTCALLT-DGTVWCWGDNAYGQLGDGTTTDRSTPV 343
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
135-183 6.92e-09

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 52.13  E-value: 6.92e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 913453430  135 DGSVWAWGQNNEGQLGKPPSVTpSAVPSQVASLP--RIKAIAAGGFHALAL 183
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTEN-VLVPQKVEGLSgnKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
291-340 2.16e-08

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 50.98  E-value: 2.16e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 913453430  291 GAVWTWGRNNHGQIGNGSSSaSVHQPTPYAVALSGPVSLVAGGGNHSLAL 340
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTTE-NVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
343-391 8.41e-08

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 49.05  E-value: 8.41e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 913453430  343 SGAVHSWGQNAQGQLGLGhTTSPVSTPQQIPFLGD--ASLIAAGNAFSLVL 391
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLG-TTENVLVPQKVEGLSGnkVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
275-303 1.10e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 48.19  E-value: 1.10e-07
                          10        20
                  ....*....|....*....|....*....
gi 913453430  275 KAIAAGWYHALAVSTTGAVWTWGRNNHGQ 303
Cdd:pfam13540   2 VSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
121-148 6.68e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 45.88  E-value: 6.68e-07
                          10        20
                  ....*....|....*....|....*...
gi 913453430  121 DVAAGVGHTLYLRSDGSVWAWGQNNEGQ 148
Cdd:pfam13540   3 SVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
170-199 8.21e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 45.88  E-value: 8.21e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 913453430  170 IKAIAAGGFHALALDVSGHLWAWGQNSQGQ 199
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
Cu-binding_MopE pfam11617
Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other ...
 690-718 2.02e-06

Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other sequence either in UniProt or in NCBI (Sep2014). The model is of a short repeat not found on the G1UBC6 - 2vov - protein. The presence of conserved cysteine residues and the lack of hydrophobic residues suggests that this repeat might be a metal-binding site, perhaps for zinc or calcium ions.


Pssm-ID: 463309 [Multi-domain]  Cd Length: 28  Bit Score: 44.79  E-value: 2.02e-06
                          10        20
                  ....*....|....*....|....*....
gi 913453430  690 DCDDTRSQRRPNMAEVCgDGLDNDCDGVV 718
Cdd:pfam11617   1 DCDDSDPAIHPGAAEIC-DGIDNNCDGVV 28
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
395-442 5.23e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 44.05  E-value: 5.23e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 913453430  395 SGQVLSFGQNNFGQLGDETTANRPSPVSTPHLTQ--VIGLSAGANHGVAL 442
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGnkVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
240-287 1.05e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 43.27  E-value: 1.05e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 913453430  240 GTVWVWGNNTYGQSGTGTVgGSTLVPAAVSIVGGAKA--IAAGWYHALAV 287
Cdd:pfam00415   2 GRVYTWGRNDYGQLGLGTT-ENVLVPQKVEGLSGNKVvqVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
186-236 7.42e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 40.96  E-value: 7.42e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 913453430  186 SGHLWAWGQNSQGQLGTGtTTAPPSAPVQVTIPGAAALTAVAAGNQYSMAL 236
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLG-TTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
327-356 1.12e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 39.71  E-value: 1.12e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 913453430  327 VSLVAGGGNHSLALHASGAVHSWGQNAQGQ 356
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
Cu-binding_MopE pfam11617
Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other ...
 518-539 5.73e-04

Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other sequence either in UniProt or in NCBI (Sep2014). The model is of a short repeat not found on the G1UBC6 - 2vov - protein. The presence of conserved cysteine residues and the lack of hydrophobic residues suggests that this repeat might be a metal-binding site, perhaps for zinc or calcium ions.


Pssm-ID: 463309 [Multi-domain]  Cd Length: 28  Bit Score: 37.86  E-value: 5.73e-04
                          10        20
                  ....*....|....*....|..
gi 913453430  518 PAISPDADELCNGLDDDCDGEI 539
Cdd:pfam11617   7 PAIHPGAAEICDGIDNNCDGVV 28
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
229-252 3.68e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 35.48  E-value: 3.68e-03
                          10        20
                  ....*....|....*....|....
gi 913453430  229 GNQYSMALDAAGTVWVWGNNTYGQ 252
Cdd:pfam13540   7 GDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
429-458 6.71e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 34.71  E-value: 6.71e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 913453430  429 VIGLSAGANHGVALSSGCPVWAWGQNTQGQ 458
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
Cu-binding_MopE pfam11617
Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other ...
 580-594 9.34e-03

Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other sequence either in UniProt or in NCBI (Sep2014). The model is of a short repeat not found on the G1UBC6 - 2vov - protein. The presence of conserved cysteine residues and the lack of hydrophobic residues suggests that this repeat might be a metal-binding site, perhaps for zinc or calcium ions.


Pssm-ID: 463309 [Multi-domain]  Cd Length: 28  Bit Score: 34.39  E-value: 9.34e-03
                          10
                  ....*....|....*
gi 913453430  580 AEVCDGLDNDCNGVV 594
Cdd:pfam11617  14 AEICDGIDNNCDGVV 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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