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Conserved domains on  [gi|910115236|ref|WP_050005064|]
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DUF6551 family protein [Ruthenibacterium lactatiformans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6551 super family cl48358
Family of unknown function (DUF6551); This presumed domain is functionally uncharacterized. ...
 38-139 3.77e-10

Family of unknown function (DUF6551); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 200 amino acids in length. Many sequences are related to ParB proteins, annotated as ParB-like or ParB domain-containing proteins. It contains the conserved motifs YQR, DGQH and EAxxF.


The actual alignment was detected with superfamily member pfam20188:

Pssm-ID: 466339  Cd Length: 241  Bit Score: 59.00  E-value: 3.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910115236   38 IYQRD-QGRHVAHIASNWDDNKAGHLEASERGDHFNIWDGGNRLRAAVMV---GKTHVLCNIRTGLTDEDEAHLFVTQEE 113
Cdd:pfam20188   5 LYQRGvNRKRVELIAAEFNERIANEPKVSFRDGRYYVFDGQHTIAARKLLnggGDLPILCKVYTGLTEEEEALLFAQQTG 84

                          90       100
                  ....*....|....*....|....*.
gi 910115236  114 NVTKLTQYDKFIAACASGEERGKAAL 139
Cdd:pfam20188  85 DSAPLTAGAKLRALVVGGDADAMAFL 110
 
Name Accession Description Interval E-value
DUF6551 pfam20188
Family of unknown function (DUF6551); This presumed domain is functionally uncharacterized. ...
 38-139 3.77e-10

Family of unknown function (DUF6551); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 200 amino acids in length. Many sequences are related to ParB proteins, annotated as ParB-like or ParB domain-containing proteins. It contains the conserved motifs YQR, DGQH and EAxxF.


Pssm-ID: 466339  Cd Length: 241  Bit Score: 59.00  E-value: 3.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910115236   38 IYQRD-QGRHVAHIASNWDDNKAGHLEASERGDHFNIWDGGNRLRAAVMV---GKTHVLCNIRTGLTDEDEAHLFVTQEE 113
Cdd:pfam20188   5 LYQRGvNRKRVELIAAEFNERIANEPKVSFRDGRYYVFDGQHTIAARKLLnggGDLPILCKVYTGLTEEEEALLFAQQTG 84

                          90       100
                  ....*....|....*....|....*.
gi 910115236  114 NVTKLTQYDKFIAACASGEERGKAAL 139
Cdd:pfam20188  85 DSAPLTAGAKLRALVVGGDADAMAFL 110
 
Name Accession Description Interval E-value
DUF6551 pfam20188
Family of unknown function (DUF6551); This presumed domain is functionally uncharacterized. ...
 38-139 3.77e-10

Family of unknown function (DUF6551); This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 200 amino acids in length. Many sequences are related to ParB proteins, annotated as ParB-like or ParB domain-containing proteins. It contains the conserved motifs YQR, DGQH and EAxxF.


Pssm-ID: 466339  Cd Length: 241  Bit Score: 59.00  E-value: 3.77e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 910115236   38 IYQRD-QGRHVAHIASNWDDNKAGHLEASERGDHFNIWDGGNRLRAAVMV---GKTHVLCNIRTGLTDEDEAHLFVTQEE 113
Cdd:pfam20188   5 LYQRGvNRKRVELIAAEFNERIANEPKVSFRDGRYYVFDGQHTIAARKLLnggGDLPILCKVYTGLTEEEEALLFAQQTG 84

                          90       100
                  ....*....|....*....|....*.
gi 910115236  114 NVTKLTQYDKFIAACASGEERGKAAL 139
Cdd:pfam20188  85 DSAPLTAGAKLRALVVGGDADAMAFL 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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