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Conserved domains on  [gi|898325295|ref|WP_049585311|]
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MULTISPECIES: phage tail protein [Photorhabdus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_T4_gp19 super family cl23998
T4-like virus tail tube protein gp19; This family consists of several tail tube protein gp19 ...
 12-147 4.90e-50

T4-like virus tail tube protein gp19; This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.


The actual alignment was detected with superfamily member TIGR02241:

Pssm-ID: 451650  Cd Length: 140  Bit Score: 156.77  E-value: 4.90e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898325295   12 YPIPTYRFVVSIGDEQIP-FTSVSGLDISHDVIEYKDGIGN--YYKMPGQRQSINITLRKGIFSgDTKLFDWINSIQLN- 87
Cdd:TIGR02241   2 DPLVSFRFYVEIDGETVAgFSSVSGLQITMDVIEYREGGGNenERKLPGRTKYGPVTLKRGVTN-DSDLWQWANDSMLNd 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 898325295   88 -QVEKKDISISLTNETGtEILMSWSVANAFPTSLTSPSFDAASNEIAIQEITLTADRVTIQ 147
Cdd:TIGR02241  81 mGTRRKNASIRLYNEAG-EPLMRWEVINAWPTKYGAPDLDANSNQVAVESIELVHEGLKRQ 140
 
Name Accession Description Interval E-value
TIGR02241 TIGR02241
conserved hypothetical phage tail region protein; This family consists of uncharacterized ...
 12-147 4.90e-50

conserved hypothetical phage tail region protein; This family consists of uncharacterized proteins. All members so far represent bacterial genes found in apparent phage or otherwisely laterally transferred regions of the chromosome. Tentatively identified neighboring proteins tend to be phage tail region proteins. In some species, including Photorhabdus luminescens TTO1, several members of this family may be encoded near each other.


Pssm-ID: 274049  Cd Length: 140  Bit Score: 156.77  E-value: 4.90e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898325295   12 YPIPTYRFVVSIGDEQIP-FTSVSGLDISHDVIEYKDGIGN--YYKMPGQRQSINITLRKGIFSgDTKLFDWINSIQLN- 87
Cdd:TIGR02241   2 DPLVSFRFYVEIDGETVAgFSSVSGLQITMDVIEYREGGGNenERKLPGRTKYGPVTLKRGVTN-DSDLWQWANDSMLNd 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 898325295   88 -QVEKKDISISLTNETGtEILMSWSVANAFPTSLTSPSFDAASNEIAIQEITLTADRVTIQ 147
Cdd:TIGR02241  81 mGTRRKNASIRLYNEAG-EPLMRWEVINAWPTKYGAPDLDANSNQVAVESIELVHEGLKRQ 140
Phage_T4_gp19 pfam06841
T4-like virus tail tube protein gp19; This family consists of several tail tube protein gp19 ...
 15-145 1.94e-48

T4-like virus tail tube protein gp19; This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.


Pssm-ID: 429149  Cd Length: 134  Bit Score: 152.40  E-value: 1.94e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898325295   15 PTYRFVVSIGDEQI-PFTSVSGLDISHDVIEYKDGIGN--YYKMPGQRQSINITLRKGIFSgDTKLFDWINSIQLNQVE- 90
Cdd:pfam06841   1 PAFRFQVEIDGEVDaAFQEVSGLKIETEVVEYREGGENrfVRKLPGRTKYGNLTLKRGLTD-DSELWDWFNKVINGGIKa 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 898325295   91 -KKDISISLTNETGTEiLMSWSVANAFPTSLTSPSFDAASNEIAIQEITLTADRVT 145
Cdd:pfam06841  80 aRKDISISLLNEDGNP-VARWKLINAWPVKWTGPDLDASSNEVAIETLELAHEGFE 134
 
Name Accession Description Interval E-value
TIGR02241 TIGR02241
conserved hypothetical phage tail region protein; This family consists of uncharacterized ...
 12-147 4.90e-50

conserved hypothetical phage tail region protein; This family consists of uncharacterized proteins. All members so far represent bacterial genes found in apparent phage or otherwisely laterally transferred regions of the chromosome. Tentatively identified neighboring proteins tend to be phage tail region proteins. In some species, including Photorhabdus luminescens TTO1, several members of this family may be encoded near each other.


Pssm-ID: 274049  Cd Length: 140  Bit Score: 156.77  E-value: 4.90e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898325295   12 YPIPTYRFVVSIGDEQIP-FTSVSGLDISHDVIEYKDGIGN--YYKMPGQRQSINITLRKGIFSgDTKLFDWINSIQLN- 87
Cdd:TIGR02241   2 DPLVSFRFYVEIDGETVAgFSSVSGLQITMDVIEYREGGGNenERKLPGRTKYGPVTLKRGVTN-DSDLWQWANDSMLNd 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 898325295   88 -QVEKKDISISLTNETGtEILMSWSVANAFPTSLTSPSFDAASNEIAIQEITLTADRVTIQ 147
Cdd:TIGR02241  81 mGTRRKNASIRLYNEAG-EPLMRWEVINAWPTKYGAPDLDANSNQVAVESIELVHEGLKRQ 140
Phage_T4_gp19 pfam06841
T4-like virus tail tube protein gp19; This family consists of several tail tube protein gp19 ...
 15-145 1.94e-48

T4-like virus tail tube protein gp19; This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.


Pssm-ID: 429149  Cd Length: 134  Bit Score: 152.40  E-value: 1.94e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 898325295   15 PTYRFVVSIGDEQI-PFTSVSGLDISHDVIEYKDGIGN--YYKMPGQRQSINITLRKGIFSgDTKLFDWINSIQLNQVE- 90
Cdd:pfam06841   1 PAFRFQVEIDGEVDaAFQEVSGLKIETEVVEYREGGENrfVRKLPGRTKYGNLTLKRGLTD-DSELWDWFNKVINGGIKa 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 898325295   91 -KKDISISLTNETGTEiLMSWSVANAFPTSLTSPSFDAASNEIAIQEITLTADRVT 145
Cdd:pfam06841  80 aRKDISISLLNEDGNP-VARWKLINAWPVKWTGPDLDASSNEVAIETLELAHEGFE 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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