|
Name |
Accession |
Description |
Interval |
E-value |
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
1-318 |
9.88e-127 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 364.39 E-value: 9.88e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 1 MRNFILRRLLQTIPMLLLASLLIFCIFALAPGDFIDGNI--NLTAQRAAELRALYGLDQPLFSRYLHWLGRLLQGDLGFS 78
Cdd:COG0601 1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLgpRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 79 LQYQIPVSTLLNQYIWNSFLLAAVAMVLYWGIALAVGVISAMKPYSLFDHLITVAVFAAMSFPTFFLCLLLIKWFAVDLH 158
Cdd:COG0601 81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 159 WLPAGGMLrtgseaSGLAWALEVAAHLLLPVLALVMLQAGSLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHALRN 238
Cdd:COG0601 161 WLPVSGRV------SPWEDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRN 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 239 ALLPIVTLLGFELPGLFSGALITEKIFNWPGAGHIHIDSLAARDYPVLMGFTLFLAALTILGNLLADILYAYADPRIRLR 318
Cdd:COG0601 235 ALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
|
|
| PRK10352 |
PRK10352 |
nickel transporter permease NikB; Provisional |
1-317 |
1.16e-66 |
|
nickel transporter permease NikB; Provisional
Pssm-ID: 182400 [Multi-domain] Cd Length: 314 Bit Score: 211.48 E-value: 1.16e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 1 MRNFILRRLLQTIPMLLLASLLIFCIFALAPGD-----FIDGNINLTAQRAAELRALYGLDQPLFSRYLHWLGRLLQGDL 75
Cdd:PRK10352 1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDpaldyLRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 76 GFSLQYQIPVSTLLNQYIWNSFLLAAVAMVLYWGIALAVGVISAMKPYSLFDHLITVAVFAAMSFPTFFLCLLLIKWFAV 155
Cdd:PRK10352 81 GISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 156 DLHWLPAGGmlRTGseasglawalevAAHLLLPVLALVMLQAGSLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHA 235
Cdd:PRK10352 161 YLQWLPAMG--YGG------------WQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHI 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 236 LRNALLPIVTLLGFELPGLFSGALITEKIFNWPGAGHIHIDSLAARDYPVLMGFTLFLAALTILGNLLADILYAYADPRI 315
Cdd:PRK10352 227 LRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRI 306
|
..
gi 851965373 316 RL 317
Cdd:PRK10352 307 RR 308
|
|
| nickel_nikB |
TIGR02789 |
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ... |
1-316 |
2.48e-65 |
|
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131836 [Multi-domain] Cd Length: 314 Bit Score: 208.08 E-value: 2.48e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 1 MRNFILRRLLQTIPMLLLASLLIFCIFALAPGDFID-----GNINLTAQRAAELRALYGLDQPLFSRYLHWLGRLLQGDL 75
Cdd:TIGR02789 1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEdylrlSHIPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 76 GFSLQYQIPVSTLLNQYIWNSFLLAAVAMVLYWGIALAVGVISAMKPYSLFDHLITVAVFAAMSFPTFFLCLLLIKWFAV 155
Cdd:TIGR02789 81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 156 DLHWLPAGGmlrtgseASGlawalevAAHLLLPVLALVMLQAGSLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHA 235
Cdd:TIGR02789 161 YLNLLPTNG-------AGT-------WQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHI 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 236 LRNALLPIVTLLGFELPGLFSGALITEKIFNWPGAGHIHIDSLAARDYPVLMGFTLFLAALTILGNLLADILYAYADPRI 315
Cdd:TIGR02789 227 LRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRI 306
|
.
gi 851965373 316 R 316
Cdd:TIGR02789 307 R 307
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
111-316 |
1.77e-23 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 95.06 E-value: 1.77e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 111 ALAVGVISAMKPYSLFDHLITVAVFAAMSFPTFFLCLLLIKWFAVDlhwlpaggmlrtgseasglawaleVAAHLLLPVL 190
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILS------------------------ILGHGILPAI 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 191 ALVMLQAGSLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHALRNALLPIVTLLGFELPGLFSGALITEKIFNWPGA 270
Cdd:pfam00528 57 ILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGL 136
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 851965373 271 GHIHIDSLAARDYPVLMGFTLFLAALTILGNLLADILYAYADPRIR 316
Cdd:pfam00528 137 GLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
93-306 |
9.51e-12 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 63.07 E-value: 9.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 93 IWNSFLLAAVAMVLYWGIALAVGVISAMKPySLFDHLITVAVFAAMSFPTFFLCLLLIKWFAVDLHWLpaggmlrtgsea 172
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKR-GKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG------------ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 173 sglawaleVAAHLLLPVLALVMLQAGSLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHALRNALLPIVTLLGFELP 252
Cdd:cd06261 68 --------ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFA 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 851965373 253 GLFSGALITEKIFNWPGAGhihIDSLAARDYPVLMGFTLFLAALTILGNLLADI 306
Cdd:cd06261 140 RALGEFALVSFLGGGEAPG---PGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
1-318 |
9.88e-127 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 364.39 E-value: 9.88e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 1 MRNFILRRLLQTIPMLLLASLLIFCIFALAPGDFIDGNI--NLTAQRAAELRALYGLDQPLFSRYLHWLGRLLQGDLGFS 78
Cdd:COG0601 1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLgpRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 79 LQYQIPVSTLLNQYIWNSFLLAAVAMVLYWGIALAVGVISAMKPYSLFDHLITVAVFAAMSFPTFFLCLLLIKWFAVDLH 158
Cdd:COG0601 81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 159 WLPAGGMLrtgseaSGLAWALEVAAHLLLPVLALVMLQAGSLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHALRN 238
Cdd:COG0601 161 WLPVSGRV------SPWEDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRN 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 239 ALLPIVTLLGFELPGLFSGALITEKIFNWPGAGHIHIDSLAARDYPVLMGFTLFLAALTILGNLLADILYAYADPRIRLR 318
Cdd:COG0601 235 ALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRLG 314
|
|
| PRK10352 |
PRK10352 |
nickel transporter permease NikB; Provisional |
1-317 |
1.16e-66 |
|
nickel transporter permease NikB; Provisional
Pssm-ID: 182400 [Multi-domain] Cd Length: 314 Bit Score: 211.48 E-value: 1.16e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 1 MRNFILRRLLQTIPMLLLASLLIFCIFALAPGD-----FIDGNINLTAQRAAELRALYGLDQPLFSRYLHWLGRLLQGDL 75
Cdd:PRK10352 1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDpaldyLRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 76 GFSLQYQIPVSTLLNQYIWNSFLLAAVAMVLYWGIALAVGVISAMKPYSLFDHLITVAVFAAMSFPTFFLCLLLIKWFAV 155
Cdd:PRK10352 81 GISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 156 DLHWLPAGGmlRTGseasglawalevAAHLLLPVLALVMLQAGSLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHA 235
Cdd:PRK10352 161 YLQWLPAMG--YGG------------WQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHI 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 236 LRNALLPIVTLLGFELPGLFSGALITEKIFNWPGAGHIHIDSLAARDYPVLMGFTLFLAALTILGNLLADILYAYADPRI 315
Cdd:PRK10352 227 LRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRI 306
|
..
gi 851965373 316 RL 317
Cdd:PRK10352 307 RR 308
|
|
| PRK15081 |
PRK15081 |
glutathione ABC transporter permease GsiC; Provisional |
1-318 |
1.16e-66 |
|
glutathione ABC transporter permease GsiC; Provisional
Pssm-ID: 185039 [Multi-domain] Cd Length: 306 Bit Score: 211.11 E-value: 1.16e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 1 MRNFILRRLLQTIPMLLLASLLIFCIFALAPGD---FIDGNiNLTAQRAAELRALYGLDQPLFSRYLHWLGRLLQGDLGF 77
Cdd:PRK15081 1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDparLAAGP-EADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 78 SLQYQIPVSTLLNQYIWNSFLLAAVAMVLYWGIALAVGVISAMKPYSLFDHL-ITVAVfAAMSFPTFFLCLLLIKWFAVD 156
Cdd:PRK15081 80 SMVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLgMTLAV-SGISFPAFALGMLLMQVFSVE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 157 LHWLPAGGmlrtgseasGLAWAlevaaHLLLPVLALVMLQAGSLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHAL 236
Cdd:PRK15081 159 LGWLPTVG---------ADSWQ-----HYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGL 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 237 RNALLPIVTLLGFELPGLFSGALITEKIFNWPGAGHIHIDSLAARDYPVLMGFTLFLAALTILGNLLADILYAYADPRIR 316
Cdd:PRK15081 225 RNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
|
..
gi 851965373 317 LR 318
Cdd:PRK15081 305 YK 306
|
|
| nickel_nikB |
TIGR02789 |
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ... |
1-316 |
2.48e-65 |
|
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131836 [Multi-domain] Cd Length: 314 Bit Score: 208.08 E-value: 2.48e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 1 MRNFILRRLLQTIPMLLLASLLIFCIFALAPGDFID-----GNINLTAQRAAELRALYGLDQPLFSRYLHWLGRLLQGDL 75
Cdd:TIGR02789 1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAEdylrlSHIPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 76 GFSLQYQIPVSTLLNQYIWNSFLLAAVAMVLYWGIALAVGVISAMKPYSLFDHLITVAVFAAMSFPTFFLCLLLIKWFAV 155
Cdd:TIGR02789 81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 156 DLHWLPAGGmlrtgseASGlawalevAAHLLLPVLALVMLQAGSLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHA 235
Cdd:TIGR02789 161 YLNLLPTNG-------AGT-------WQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHI 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 236 LRNALLPIVTLLGFELPGLFSGALITEKIFNWPGAGHIHIDSLAARDYPVLMGFTLFLAALTILGNLLADILYAYADPRI 315
Cdd:TIGR02789 227 LRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRI 306
|
.
gi 851965373 316 R 316
Cdd:TIGR02789 307 R 307
|
|
| PRK10914 |
PRK10914 |
dipeptide ABC transporter permease DppB; |
1-316 |
1.04e-63 |
|
dipeptide ABC transporter permease DppB;
Pssm-ID: 182834 [Multi-domain] Cd Length: 339 Bit Score: 204.66 E-value: 1.04e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 1 MRNFILRRLLQTIPMLLLASLLIFCIFALAPGD---FIDGNINLTAQRAAELRALYGLDQPLFSRYLHWLGRLLQGDLGF 77
Cdd:PRK10914 1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDpvmIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 78 SLQYQIPVSTLLNQYIWNSFLLAAVAMVLYWGIALAVGVISAMKPYSLFDHLITVAVFAAMSFPTFFLCLLLIKWFAVDL 157
Cdd:PRK10914 81 SLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 158 HWLPAGG------MLRTGSEASG------LAWA-----LEVAAHLLLPVLALVMLQAGSLTRYFRASMLDVIRMDYIRTA 220
Cdd:PRK10914 161 NLTPVSGrvsdmvFLDDSNPLTGfmlidtAIWGedgnfIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 221 RAKGLREKTVILKHALRNALLPIVTLLGFELPGLFSGALITEKIFNWPGAGHIHIDSLAARDYPVLMGFTLFLAALTILG 300
Cdd:PRK10914 241 RAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILV 320
|
330
....*....|....*.
gi 851965373 301 NLLADILYAYADPRIR 316
Cdd:PRK10914 321 NLLVDLLYGVVNPRIR 336
|
|
| oppB |
PRK09471 |
oligopeptide ABC transporter permease OppB; |
1-316 |
3.67e-63 |
|
oligopeptide ABC transporter permease OppB;
Pssm-ID: 181886 [Multi-domain] Cd Length: 306 Bit Score: 202.22 E-value: 3.67e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 1 MRNFILRRLLQTIPMLLLASLLIFCIFALAPGDFIDGNINLTAQRAAELRALYGLDQPLFSRYLHWLGRLLQGDLGFSLQ 80
Cdd:PRK09471 1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 81 YQ-IPVSTLLNQYIWNSFLLAAVAMVLYWGIALAVGVISAMKPYSLFDHLITVAVFAAMSFPTFFLCLLLIKWFAVDLHW 159
Cdd:PRK09471 81 YKdYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITLHW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 160 LPAGGmlrtgseasglaWALEVAAHLLLPVLALVMLQAGSLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHALRNA 239
Cdd:PRK09471 161 LPGGG------------WNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPA 228
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 851965373 240 LLPIVTLLGFELPGLFSGALITEKIFNWPGAGHIHIDSLAARDYPVLMGFTLFLAALTILGNLLADILYAYADPRIR 316
Cdd:PRK09471 229 LLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIR 305
|
|
| YejB |
COG4174 |
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ... |
1-315 |
7.63e-42 |
|
ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443333 [Multi-domain] Cd Length: 363 Bit Score: 148.41 E-value: 7.63e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 1 MRNFILRRLLQTIPMLLLASLLIFCIFALAPGDFID-------------------------------------GNINLTA 43
Cdd:COG4174 1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPVEqviaqlqgtgggatgrisggggdagggaaagggskyrGARGLDP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 44 QRAAELRALYGLDQPLFSRYLHWLGRLLQGDLGFSLQYQIPVSTLLNQYIWNSFLLAAVAMVLYWGIALAVGVISAMKPY 123
Cdd:COG4174 81 EFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAVRDG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 124 SLFDHLITVAVFAAMSFPTFFLCLLLIKWFAVD--LHWLPAGGMlrTGSEASGLAW---ALEVAAHLLLPVLALVMLQAG 198
Cdd:COG4174 161 SRFDVWTSTVIIVGYAIPGFLFAILLIVLFAGGsyFDWFPLRGL--TSDNWDQLSWwgkILDYLWHLTLPVTAMVIGGFA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 199 SLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHALRNALLPIVTllGFelPG-----LFSGALITEKIFNWPGAGHI 273
Cdd:COG4174 239 TLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIA--GF--PAafigaFFTGSLLIETIFSLDGLGLL 314
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 851965373 274 HIDSLAARDYPVLMGfTLFLAALT-ILGNLLADILYAYADPRI 315
Cdd:COG4174 315 GFEAVVNRDYPVVFG-TLYIFTLIgLVLKLISDLTYVLVDPRI 356
|
|
| PRK15133 |
PRK15133 |
microcin C ABC transporter permease YejB; Provisional |
1-315 |
2.54e-34 |
|
microcin C ABC transporter permease YejB; Provisional
Pssm-ID: 185087 [Multi-domain] Cd Length: 364 Bit Score: 128.33 E-value: 2.54e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 1 MRNFILRRLLQTIPMLLLASLLIFCIFALAPGDFID-----------------GNINLTAQRA----------------- 46
Cdd:PRK15133 1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDqaiaaiefgqagglpgaGGEGVRASHAqtgvgnisdsnyrggrg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 47 ------AELRALYGLDQPLFSRYLHWLGRLLQGDLGFSLQYQIPVSTLLNQYIWNSFLLAAVAMVLYWGIALAVGVISAM 120
Cdd:PRK15133 81 ldpeviAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 121 KPYSLFDHLITVAVFAAMSFPTFFLCLLLIKWFAVD--LHWLPAGGMlrTGSEASGLAWALEVAA---HLLLPVLALVML 195
Cdd:PRK15133 161 RNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGsyFDLFPLRGL--VSANFDSLPWYQKITDylwHITLPVLATVIG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 196 QAGSLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHALRNALLPIVTllGFE---LPGLFSGALITEKIFNWPGAGH 272
Cdd:PRK15133 239 GFAALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIA--GFPatfISMFFTGSLLIEVMFSLNGLGL 316
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 851965373 273 IHIDSLAARDYPVLMGFTLFLAALTILGNLLADILYAYADPRI 315
Cdd:PRK15133 317 LGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRI 359
|
|
| PRK15110 |
PRK15110 |
peptide ABC transporter permease SapB; |
1-313 |
2.25e-31 |
|
peptide ABC transporter permease SapB;
Pssm-ID: 185065 [Multi-domain] Cd Length: 321 Bit Score: 119.79 E-value: 2.25e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 1 MRNFILRRLLQTIPMLLLASLLIFCIFALAPGDFIDGninltaqraaelralygldQPLFSRYLHWLGRLLQGDLGFSLQ 80
Cdd:PRK15110 1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPLQG-------------------ASLWDAWVFWFNGLLHWDFGVSSI 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 81 YQIPVSTLLNQYIWNSFLLAAVAMVLYWGIALAVGVISAMKPYSLFDHLITVAVFAAMSFPTFFLCLLLIKWFAVDLHWL 160
Cdd:PRK15110 62 NGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTLGWL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 161 PAGG---MLRTGSEASGL----AW----------ALEVAAHLLLPVLALVMLQAGSLTRYFRASMLDVIRMDYIRTARAK 223
Cdd:PRK15110 142 PVSGrfdLLYEVKPVTGFalidAWlsdspwrdemIMSAIRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAATR 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 224 GLREKTVILKHALRNALLPIVTLLGFELPGLFSGALITEKIFNWPGAGHIHIDSLAARDYPVLMGFTLFLAALTILGNLL 303
Cdd:PRK15110 222 GLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVNVL 301
|
330
....*....|
gi 851965373 304 ADILYAYADP 313
Cdd:PRK15110 302 SDILGAMANP 311
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
111-316 |
1.77e-23 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 95.06 E-value: 1.77e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 111 ALAVGVISAMKPYSLFDHLITVAVFAAMSFPTFFLCLLLIKWFAVDlhwlpaggmlrtgseasglawaleVAAHLLLPVL 190
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILS------------------------ILGHGILPAI 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 191 ALVMLQAGSLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHALRNALLPIVTLLGFELPGLFSGALITEKIFNWPGA 270
Cdd:pfam00528 57 ILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGL 136
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 851965373 271 GHIHIDSLAARDYPVLMGFTLFLAALTILGNLLADILYAYADPRIR 316
Cdd:pfam00528 137 GLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
93-306 |
9.51e-12 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 63.07 E-value: 9.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 93 IWNSFLLAAVAMVLYWGIALAVGVISAMKPySLFDHLITVAVFAAMSFPTFFLCLLLIKWFAVDLHWLpaggmlrtgsea 172
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKR-GKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWG------------ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 173 sglawaleVAAHLLLPVLALVMLQAGSLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHALRNALLPIVTLLGFELP 252
Cdd:cd06261 68 --------ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFA 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 851965373 253 GLFSGALITEKIFNWPGAGhihIDSLAARDYPVLMGFTLFLAALTILGNLLADI 306
Cdd:cd06261 140 RALGEFALVSFLGGGEAPG---PGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
5-262 |
2.01e-06 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 48.19 E-value: 2.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 5 ILRRLLQT----IPMLLLASLLIFCIFA--LAPGDFIDGNINLTAQrAAELRALYGLDQ---PLFSRylhwlgrLLQGdl 75
Cdd:COG1173 8 AWRRLRRNplavIGLVILLLLVLLALFAplLAPYDPTAQDLAARLQ-PPSAAHWLGTDQlgrDVLSR-------LLYG-- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 76 gfslqyqipvstllnqyIWNSFLLAAVAMVLYWGIALAVGVISAMKPySLFDHLITVAVFAAMSFPTFFLCLLLIkwfav 155
Cdd:COG1173 78 -----------------ARISLLVGLLAVLIALVIGVLLGLLAGYFG-GWVDAVLMRLVDVLLAFPSLLLAIALV----- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 156 dlhwlpagGMLRTGseasglawalevaahLLLPVLALVMLQAGSLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHA 235
Cdd:COG1173 135 --------AVLGPG---------------LLNVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHI 191
|
250 260
....*....|....*....|....*..
gi 851965373 236 LRNALLPIVTLLGFelpgLFSGALITE 262
Cdd:COG1173 192 LPNVLPPLIVQATL----GIASAILAE 214
|
|
| BPD_transp_1_N |
pfam19300 |
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ... |
1-89 |
2.39e-06 |
|
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.
Pssm-ID: 437132 [Multi-domain] Cd Length: 114 Bit Score: 45.67 E-value: 2.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 851965373 1 MRNFILRRLLQTIPMLLLASLLIFCIFALAPGDF--IDGNINLTAQRAAELRALYGLDQPLFSRYLHWLGRLLQGD---- 74
Cdd:pfam19300 1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDParLACGKNCTPETLALIRHNLGLDKPIPVQYWHFLSGIFAGRdfga 80
|
90 100
....*....|....*....|...
gi 851965373 75 --------LGFSLQYQIPVSTLL 89
Cdd:pfam19300 81 vghcpapcLGYSFANNEPVWDTI 103
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
199-251 |
3.82e-04 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 41.51 E-value: 3.82e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 851965373 199 SLTRYFRASMLDVIRMDYIRTARAKGLREKTVILKHALRNALLPIVTLLGFEL 251
Cdd:PRK15021 217 SLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFIL 269
|
|
| |
