|
Name |
Accession |
Description |
Interval |
E-value |
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
16-275 |
3.18e-85 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 256.19 E-value: 3.18e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 16 AWQGVEWQPGLWLAWGVIILAAFAAVAPGLLTHYSPIEGIAGAQRLAPQAGHWLGTDQLGRDVYTRIVYGASHSLSAALA 95
Cdd:COG1173 8 AWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 96 AVTMGLVVGTGLGVIAGAFAGRVESLLMRFVDVLLSIPSLLLSLTVIILLGFGTVNAAIAVGVASIASFARLARGEVVRI 175
Cdd:COG1173 88 AVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 176 RHTDYVEAAFGSGGTFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYGTPPPVPEWGLLIAEGRNYLSTAWW 255
Cdd:COG1173 168 REREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNYLLTAPW 247
|
250 260
....*....|....*....|
gi 823306005 256 LTTFPGVVVIAVVLATNRIS 275
Cdd:COG1173 248 LALFPGLAIVLTVLAFNLLG 267
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
32-272 |
9.42e-52 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 169.87 E-value: 9.42e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 32 VIILAAFAAVAPGLLTHYSPIEGIAGAQRLAPQAGHWLGTDQLGRDVYTRIVYGASHSLSAALAAVTMGLVVGTGLGVIA 111
Cdd:TIGR02790 7 IIAVLFLLAIFAPWIAPHDPLAQNLPMRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 112 GAFAGRVESLLMRFVDVLLSIPSLLLSLTVIILLGFGTVNAAIAVGVASIASFARLARGEVVRIRHTDYVEAAFGSGGTF 191
Cdd:TIGR02790 87 GYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAARTSGASH 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 192 FAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYGTPPPVPEWGLLIAEGRNYLSTAWWLTTFPGVVVIAVVLAT 271
Cdd:TIGR02790 167 WQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYPGLAILISVMAF 246
|
.
gi 823306005 272 N 272
Cdd:TIGR02790 247 N 247
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
23-274 |
4.44e-50 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 166.00 E-value: 4.44e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 23 QPGLWLAWGVIILAAFAAVAPGLLTHYSPIEGIAGAQRLAPQAGHWLGTDQLGRDVYTRIVYGASHSLSAALAAVTMGLV 102
Cdd:PRK10417 3 RWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 103 VGTGLGVIAGAFAGRVESLLMRFVDVLLSIPSLLLSLTVIILLGFGTVNAAIAVGVASIASFARLARGEVVRIRHTDYVE 182
Cdd:PRK10417 83 LGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 183 AAFGSGGTFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYGTPPPVPEWGLLIAEGRNYLSTAWWLTTFPGV 262
Cdd:PRK10417 163 AARLSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGL 242
|
250
....*....|..
gi 823306005 263 VVIAVVLATNRI 274
Cdd:PRK10417 243 ALFISVMAFNLL 254
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
88-268 |
2.63e-11 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 61.14 E-value: 2.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 88 HSLSAALAAVTMGLVVGTGLGVIAGAFAGRVESLLMRFVD--------VLLSIPSLLLSLTVIILLGFGTVNAAIAVGVA 159
Cdd:cd06261 3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDlllslpslVLGLLLVLLFGVLLGWGILPGLGLPALILALL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 160 SIASFARLARGEVVRIRHTDYVEAAFGSGGTFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYGtPPPVPEW 239
Cdd:cd06261 83 LIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG-EAPGPGT 161
|
170 180
....*....|....*....|....*....
gi 823306005 240 GLLIAEGRNYLSTAWWLTTFPGVVVIAVV 268
Cdd:cd06261 162 GLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
104-274 |
7.58e-10 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 56.92 E-value: 7.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 104 GTGLGVIAGAFAGR-VESLLMRFVDVLL---SIPSLLLSLTVIILLGFG-TVNAAIAVGVASIASFARLARGEVVRIRHT 178
Cdd:pfam00528 1 GIPLGIIAALRRGRrLDRLLRPLIDLLQalpSFVLAILLVVIAILSILGhGILPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 179 DYVEAAFGSGGTFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLgyGTPPPVPEWGLLIAEGRNYlSTAWWLTT 258
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL--GSWPGLGLLLIEAILGYDY-PEIQGPVL 157
|
170
....*....|....*.
gi 823306005 259 FPGVVVIAVVLATNRI 274
Cdd:pfam00528 158 AAALILLLLNLLVDIL 173
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
16-275 |
3.18e-85 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 256.19 E-value: 3.18e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 16 AWQGVEWQPGLWLAWGVIILAAFAAVAPGLLTHYSPIEGIAGAQRLAPQAGHWLGTDQLGRDVYTRIVYGASHSLSAALA 95
Cdd:COG1173 8 AWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 96 AVTMGLVVGTGLGVIAGAFAGRVESLLMRFVDVLLSIPSLLLSLTVIILLGFGTVNAAIAVGVASIASFARLARGEVVRI 175
Cdd:COG1173 88 AVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 176 RHTDYVEAAFGSGGTFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYGTPPPVPEWGLLIAEGRNYLSTAWW 255
Cdd:COG1173 168 REREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNYLLTAPW 247
|
250 260
....*....|....*....|
gi 823306005 256 LTTFPGVVVIAVVLATNRIS 275
Cdd:COG1173 248 LALFPGLAIVLTVLAFNLLG 267
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
32-272 |
9.42e-52 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 169.87 E-value: 9.42e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 32 VIILAAFAAVAPGLLTHYSPIEGIAGAQRLAPQAGHWLGTDQLGRDVYTRIVYGASHSLSAALAAVTMGLVVGTGLGVIA 111
Cdd:TIGR02790 7 IIAVLFLLAIFAPWIAPHDPLAQNLPMRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 112 GAFAGRVESLLMRFVDVLLSIPSLLLSLTVIILLGFGTVNAAIAVGVASIASFARLARGEVVRIRHTDYVEAAFGSGGTF 191
Cdd:TIGR02790 87 GYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAARTSGASH 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 192 FAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYGTPPPVPEWGLLIAEGRNYLSTAWWLTTFPGVVVIAVVLAT 271
Cdd:TIGR02790 167 WQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYPGLAILISVMAF 246
|
.
gi 823306005 272 N 272
Cdd:TIGR02790 247 N 247
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
23-274 |
4.44e-50 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 166.00 E-value: 4.44e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 23 QPGLWLAWGVIILAAFAAVAPGLLTHYSPIEGIAGAQRLAPQAGHWLGTDQLGRDVYTRIVYGASHSLSAALAAVTMGLV 102
Cdd:PRK10417 3 RWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 103 VGTGLGVIAGAFAGRVESLLMRFVDVLLSIPSLLLSLTVIILLGFGTVNAAIAVGVASIASFARLARGEVVRIRHTDYVE 182
Cdd:PRK10417 83 LGLVIGGSAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 183 AAFGSGGTFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYGTPPPVPEWGLLIAEGRNYLSTAWWLTTFPGV 262
Cdd:PRK10417 163 AARLSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGL 242
|
250
....*....|..
gi 823306005 263 VVIAVVLATNRI 274
Cdd:PRK10417 243 ALFISVMAFNLL 254
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
32-272 |
3.66e-47 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 159.51 E-value: 3.66e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 32 VIILAAFAAVAPgLLTHYSPiEGIAGAQRL--APQAGHWLGTDQLGRDVYTRIVYGASHSLSAALAAVTMGLVVGTGLGV 109
Cdd:PRK15082 45 VLLLIVVAIFAP-WIAPYDA-ENYFDYDALnaGPSLQHWFGVDSLGRDIFSRILVGARISLAAGFFSVAIGAAIGTVLGL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 110 IAGAFAGRVESLLMRFVDVLLSIPSLLLSLTVIILLGFGTVNAAIAVGVASIASFARLARGEVVRIRHTDYVEAAFGSGG 189
Cdd:PRK15082 123 LAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMANVIIAVAIFSIPAFARLVRGNTLVLKQQTYIESARSIGA 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 190 TFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYGTPPPVPEWGLLIAEGRNYLSTAWWLTTFPGVVVIAVVL 269
Cdd:PRK15082 203 SDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVALFPSLAIFLTVL 282
|
...
gi 823306005 270 ATN 272
Cdd:PRK15082 283 AFN 285
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
7-272 |
9.82e-47 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 158.44 E-value: 9.82e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 7 AAAARKRVPAWQGVEWQPGLWLAWGVIILAA-FAAVAPGLLTHYSPIEGIAGAQRLAPQAGHWLGTDQLGRDVYTRIVYG 85
Cdd:PRK09881 13 QKQTRFNGAKLVWMLKGSPLTVTGAVIIVLMlLMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 86 ASHSLSAALAAVTMGLVVGTGLGVIAGAFAGRVESLLMRFVDVLLSIPSLLLSLTVIILLGFGTVNAAIAVGVASIASFA 165
Cdd:PRK09881 93 SQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 166 RLARGEVVRIRHTDYVEAAFGSGGTFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYGTPPPVPEWGLLIAE 245
Cdd:PRK09881 173 RLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVAN 252
|
250 260
....*....|....*....|....*..
gi 823306005 246 GRNYLSTAWWLTTFPGVVVIAVVLATN 272
Cdd:PRK09881 253 GRNYVLDQWWYCAFPGAAILLTAVGFN 279
|
|
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
32-272 |
1.20e-42 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 147.62 E-value: 1.20e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 32 VIILAAFAAVAPGLLTHYSPIEGIAGAQRLAP---QAGHW---LGTDQLGRDVYTRIVYGASHSLSAALAAVTMGLVVGT 105
Cdd:PRK10913 38 YVVIMLFIAIFANWIAPHNPAEQFRDALLAPPvwqEGGSWahiLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGV 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 106 GLGVIAGAFAGRVESLLMRFVDVLLSIPSLLLSLTVIILLGFGTVNAAIAVGVASIASFARLARGEVVRIRHTDYVEAAF 185
Cdd:PRK10913 118 ILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASR 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 186 GSGGTFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYGTPPPVPEWGLLIAEGRNYLSTAWWLTTFPGVVVI 265
Cdd:PRK10913 198 VAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAIL 277
|
....*..
gi 823306005 266 AVVLATN 272
Cdd:PRK10913 278 LTVLAFN 284
|
|
| SapC |
COG4171 |
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms]; |
30-272 |
1.17e-39 |
|
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
Pssm-ID: 443331 [Multi-domain] Cd Length: 296 Bit Score: 139.95 E-value: 1.17e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 30 WGVIILAAFAAVAPgLLTHYSPIEGIAGAQRLAP------QAGHWLGTDQLGRDVYTRIVYGASHSLSAALAAVTMGLVV 103
Cdd:COG4171 34 YGFLFLILLALFGP-LLAPYSPDQQFIGALLLPPswddngDVSFFLGTDDLGRDILSRLLYGARYTFGSALLVVLAAAII 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 104 GTGLGVIAGAFAGRVESLLMRFVDVLLSIPSLLLSLTVIILLGFGTVNAAIAVGVASIASFARLARGEVVRIRHTDYVEA 183
Cdd:COG4171 113 GGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLENAMLAITLALLPQFIHAIYQAVHQELKKEYVLA 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 184 AFGSGGTFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYGTPPPVPEWGLLIAEGRNYLSTAWWLTTFPGVV 263
Cdd:COG4171 193 ARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLGAQLPSPEWGAMLGDSLELIYLAPWTVILPGLA 272
|
....*....
gi 823306005 264 VIAVVLATN 272
Cdd:COG4171 273 IMFSVLIVN 281
|
|
| YejE |
COG4239 |
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ... |
62-269 |
9.03e-38 |
|
ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443381 [Multi-domain] Cd Length: 342 Bit Score: 136.05 E-value: 9.03e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 62 APQAGHWLGTDQLGRDVYTRIVYGASHSLSAALAAVTMGLVVGTGLGVIAGAFAGRVESLLMRFVDVLLSIPSLLLsltV 141
Cdd:COG4239 116 PPSAENWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLLFQRFIEIWSSMPELYL---L 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 142 IILLGFGTVNAAIAVGVASIASFARLA---RGEVVRIRHTDYVEAAFGSGGTFFAVLWRHILPNALTAVLAFATLQFGQA 218
Cdd:COG4239 193 IILSSIFQPSFWLLLGILLLFGWMGLVgvvRAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMVATLTFLPFILSGA 272
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 823306005 219 ILALSTLSFLGYGTPPPVPEWGLLIAEGRNYLsTAWWLtTFPGVVVIAVVL 269
Cdd:COG4239 273 ITTLTSLDFLGFGLPPGSPSLGELLAQGKNNL-QAPWL-GLSAFVVLALML 321
|
|
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
32-274 |
8.61e-33 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 121.87 E-value: 8.61e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 32 VIILAAFAAVAPgLLTHYSPIEGIAGAQRLAP--QAGHWLGTDQLGRDVYTRIVYGASHSLSAALAAVTMGLVVGTGLGV 109
Cdd:PRK15406 46 LVLIALFVILAP-MLSQFAYDDTDWGMMSSAPdmESGHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGS 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 110 IAGAFAGRVESLLMRFVDVLLSIPSLLLSLTVIILLGFGTVNAAIAVGVASIASFARLARGEVVRIRHTDYVEAAFGSGG 189
Cdd:PRK15406 125 LSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGV 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 190 TFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYGTPPPVPEWGLLIAEGRNYLSTAWWLTTFPGVVVIAVVL 269
Cdd:PRK15406 205 STRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLF 284
|
....*
gi 823306005 270 ATNRI 274
Cdd:PRK15406 285 CFNFI 289
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
62-269 |
3.23e-24 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 99.67 E-value: 3.23e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 62 APQAGHWLGTDQLGRDVYTRIVYGASHSLSAALAAVTMGLVVGTGLGVIAGAFAGRVESLLMRFVDVLLSIPSLLLsltV 141
Cdd:PRK15021 116 PPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFL---I 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 142 IILLGFGTVNAAIAVGVASI---ASFARLARGEVVRIRHTDYVEAAFGSGGTFFAVLWRHILPNALTAVLAFATLQFGQA 218
Cdd:PRK15021 193 ILLSSVVQPNFWWLLAITVLfgwMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSS 272
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 823306005 219 ILALSTLSFLGYGTPPPVPEWGLLIAEGRNYLSTAWW-LTTFPGVVVIAVVL 269
Cdd:PRK15021 273 ITTLTSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLgITAFLSVAILLSLL 324
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
30-272 |
3.51e-18 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 82.44 E-value: 3.51e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 30 WGVIILAAFAAVApGLLTHYSPIEGIAGAQRLAPQAGHW------LGTDQLGRDVYTRIVYGASHSLSAALAAVTMGLVV 103
Cdd:PRK15111 34 YGCAGLALLCLFG-GWLAPYGIDQQFLGYQLLPPSWSRYgevsffLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATLC 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 104 GTGLGVIAGAFAGRVESLLMRFVDVLLSIPSLLLSLTVIILLGFGTVNAAIAVGVASIASFARLARGEVVRIRHTDYVEA 183
Cdd:PRK15111 113 GLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSHAMFAVWLALLPRMVRSIYSAVHDELEKEYVIA 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 184 AFGSGGTFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYGTPPPVPEWGLLIAEGRNYLSTAWWLTTFPGVV 263
Cdd:PRK15111 193 ARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDSLELIYVAPWTVMLPGAA 272
|
....*....
gi 823306005 264 VIAVVLATN 272
Cdd:PRK15111 273 IMLSVLLVN 281
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
88-268 |
2.63e-11 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 61.14 E-value: 2.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 88 HSLSAALAAVTMGLVVGTGLGVIAGAFAGRVESLLMRFVD--------VLLSIPSLLLSLTVIILLGFGTVNAAIAVGVA 159
Cdd:cd06261 3 NTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDlllslpslVLGLLLVLLFGVLLGWGILPGLGLPALILALL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 160 SIASFARLARGEVVRIRHTDYVEAAFGSGGTFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYGtPPPVPEW 239
Cdd:cd06261 83 LIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG-EAPGPGT 161
|
170 180
....*....|....*....|....*....
gi 823306005 240 GLLIAEGRNYLSTAWWLTTFPGVVVIAVV 268
Cdd:cd06261 162 GLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
104-274 |
7.58e-10 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 56.92 E-value: 7.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 104 GTGLGVIAGAFAGR-VESLLMRFVDVLL---SIPSLLLSLTVIILLGFG-TVNAAIAVGVASIASFARLARGEVVRIRHT 178
Cdd:pfam00528 1 GIPLGIIAALRRGRrLDRLLRPLIDLLQalpSFVLAILLVVIAILSILGhGILPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 179 DYVEAAFGSGGTFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLgyGTPPPVPEWGLLIAEGRNYlSTAWWLTT 258
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL--GSWPGLGLLLIEAILGYDY-PEIQGPVL 157
|
170
....*....|....*.
gi 823306005 259 FPGVVVIAVVLATNRI 274
Cdd:pfam00528 158 AAALILLLLNLLVDIL 173
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
73-219 |
1.15e-08 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 55.07 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 73 QLGRDVYTRIVYGASHSLSAALAAVTMGLVVGTGLGVIAGAFAGRVESLLMRFVDVLLSIPSLLLSLTVIILL------- 145
Cdd:COG0601 82 VYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLfavklgw 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 146 ----GFGTVNA------------AIAVGVASIASFARLARGEVVRIRHTDYVEAAFGSGGTFFAVLWRHILPNALTAVLA 209
Cdd:COG0601 162 lpvsGRVSPWEdfldalrhlilpALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVT 241
|
170
....*....|
gi 823306005 210 FATLQFGQAI 219
Cdd:COG0601 242 VLGLQLGGLL 251
|
|
| PhnE |
TIGR01097 |
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ... |
26-231 |
9.76e-04 |
|
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]
Pssm-ID: 273441 [Multi-domain] Cd Length: 250 Bit Score: 39.83 E-value: 9.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 26 LWLAWGVIILAAFAAVApGLLTHYSPIEGIAGAQRLAPQAGHWLGTDqlgRDVYTRIVYGASHSLSAALAAVTMGLVVGT 105
Cdd:TIGR01097 4 LIRIWLLALLVALYVWA-FALLGFDLARLLAGPGQMADLLGRMFPPD---WSYLPRILKALLETLAMAILGTVLAAVLAV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 823306005 106 GLGVIA--GAFAGRVESLLMRFV-DVLLSIPSLLLSLTVIILLGFGTVNAAIAVGVASIASFARLArGEVVRIRHTDYVE 182
Cdd:TIGR01097 80 PLALLAarNITPSPWLYGLARLLlNFLRAIPELVWALIFVAAVGLGPFAGVLALAFHTVGFLGKLF-AEAIEEVDPGPVE 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 823306005 183 AAFGSGGTFFAVLWRHILPNALTAVLAFATLQFGQAILALSTLSFLGYG 231
Cdd:TIGR01097 159 ALRATGASKLQVIRYGVLPQVLPQFLSYTLYRFEINVRAAAVLGLVGAG 207
|
|
|