|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
4-453 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 707.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 4 ELKELWEKTLNIIKGELSEVSFNTWIKSCEPISMSSDTIRISVPNAFTQEILEKRYKDLVANSIRaicsklynieflias 83
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 84 eiqnteeeksekqsnkkikentkvivsdemntnLNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGK 163
Cdd:PRK00149 66 ---------------------------------LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGK 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 164 THLMHAIGHYVLQNNPSAKVVYVSSEKFTNELINAIKDDKNEEFRTKYRNVDVLLIDDIQFIAGKERTQEEFFHTFNALH 243
Cdd:PRK00149 113 THLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALH 192
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 244 DANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADVEKLNVANEVMVYIATKIKSNIRELEG 323
Cdd:PRK00149 193 EAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEG 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 324 ALIRIVAYSSLTNREITVDLASEALKDIIsKKQGKHITIEIIQDVVANYFNLRVEDLKSQRRTRNVSYPRQIAMYLSRKL 403
Cdd:PRK00149 273 ALNRLIAYASLTGKPITLELAKEALKDLL-AAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKEL 351
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 786014782 404 TDMSLPKIGEEFGGRDHTTVIHAYEKISDNLNRDESLQHTIDDLTKKLTQ 453
Cdd:PRK00149 352 TDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
9-451 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 703.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 9 WEKTLNIIKGELSEVSFNTWIKSCEPISMSSDTIRISVPNAFTQEILEKRYKDLVANSIRAICSKLYNIEFLIASEiqnt 88
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGED---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 89 eEEKSEKQSNKKIKENTKVIVSDEMNTNLNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMH 168
Cdd:TIGR00362 77 -EEELEPNSKKPEPAPPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLH 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 169 AIGHYVLQNNPSAKVVYVSSEKFTNELINAIKDDKNEEFRTKYRNVDVLLIDDIQFIAGKERTQEEFFHTFNALHDANKQ 248
Cdd:TIGR00362 156 AIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQ 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 249 IILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADVEKLNVANEVMVYIATKIKSNIRELEGALIRI 328
Cdd:TIGR00362 236 IVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRL 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 329 VAYSSLTNREITVDLASEALKDIISKKQgKHITIEIIQDVVANYFNLRVEDLKSQRRTRNVSYPRQIAMYLSRKLTDMSL 408
Cdd:TIGR00362 316 LAYASLTGKPITLELAKEALKDLLRAQK-KEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSL 394
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 786014782 409 PKIGEEFGGRDHTTVIHAYEKISDNLNRDESLQHTIDDLTKKL 451
Cdd:TIGR00362 395 PEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
117-420 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 580.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 117 LNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLQNNPSAKVVYVSSEKFTNELI 196
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 197 NAIKDDKNEEFRTKYRNVDVLLIDDIQFIAGKERTQEEFFHTFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLI 276
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 277 ADIQVPDFETRMAILKKKADVEKLNVANEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREITVDLASEALKDIIsKKQ 356
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLL-RAQ 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 786014782 357 GKHITIEIIQDVVANYFNLRVEDLKSQRRTRNVSYPRQIAMYLSRKLTDMSLPKIGEEFGGRDH 420
Cdd:COG0593 240 KKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
117-335 |
2.48e-133 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 382.83 E-value: 2.48e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 117 LNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLQNNPSAKVVYVSSEKFTNELI 196
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 197 NAIKDDKNEEFRTKYRNVDVLLIDDIQFIAGKERTQEEFFHTFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLI 276
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 786014782 277 ADIQVPDFETRMAILKKKADVEKLNVANEVMVYIATKIKSNIRELEGALIRIVAYSSLT 335
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
362-451 |
1.86e-41 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 142.27 E-value: 1.86e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 362 IEIIQDVVANYFNLRVEDLKSQRRTRNVSYPRQIAMYLSRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISDNLNRDESLQ 441
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 786014782 442 HTIDDLTKKL 451
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
361-429 |
8.74e-36 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 126.47 E-value: 8.74e-36
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 786014782 361 TIEIIQDVVANYFNLRVEDLKSQRRTRNVSYPRQIAMYLSRKLTDMSLPKIGEEFGGRDHTTVIHAYEK 429
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
4-453 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 707.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 4 ELKELWEKTLNIIKGELSEVSFNTWIKSCEPISMSSDTIRISVPNAFTQEILEKRYKDLVANSIRaicsklynieflias 83
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 84 eiqnteeeksekqsnkkikentkvivsdemntnLNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGK 163
Cdd:PRK00149 66 ---------------------------------LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGK 112
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 164 THLMHAIGHYVLQNNPSAKVVYVSSEKFTNELINAIKDDKNEEFRTKYRNVDVLLIDDIQFIAGKERTQEEFFHTFNALH 243
Cdd:PRK00149 113 THLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALH 192
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 244 DANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADVEKLNVANEVMVYIATKIKSNIRELEG 323
Cdd:PRK00149 193 EAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEG 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 324 ALIRIVAYSSLTNREITVDLASEALKDIIsKKQGKHITIEIIQDVVANYFNLRVEDLKSQRRTRNVSYPRQIAMYLSRKL 403
Cdd:PRK00149 273 ALNRLIAYASLTGKPITLELAKEALKDLL-AAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKEL 351
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 786014782 404 TDMSLPKIGEEFGGRDHTTVIHAYEKISDNLNRDESLQHTIDDLTKKLTQ 453
Cdd:PRK00149 352 TDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
9-451 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 703.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 9 WEKTLNIIKGELSEVSFNTWIKSCEPISMSSDTIRISVPNAFTQEILEKRYKDLVANSIRAICSKLYNIEFLIASEiqnt 88
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGED---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 89 eEEKSEKQSNKKIKENTKVIVSDEMNTNLNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMH 168
Cdd:TIGR00362 77 -EEELEPNSKKPEPAPPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLH 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 169 AIGHYVLQNNPSAKVVYVSSEKFTNELINAIKDDKNEEFRTKYRNVDVLLIDDIQFIAGKERTQEEFFHTFNALHDANKQ 248
Cdd:TIGR00362 156 AIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENNKQ 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 249 IILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADVEKLNVANEVMVYIATKIKSNIRELEGALIRI 328
Cdd:TIGR00362 236 IVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEGALNRL 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 329 VAYSSLTNREITVDLASEALKDIISKKQgKHITIEIIQDVVANYFNLRVEDLKSQRRTRNVSYPRQIAMYLSRKLTDMSL 408
Cdd:TIGR00362 316 LAYASLTGKPITLELAKEALKDLLRAQK-KEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSL 394
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 786014782 409 PKIGEEFGGRDHTTVIHAYEKISDNLNRDESLQHTIDDLTKKL 451
Cdd:TIGR00362 395 PEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
117-420 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 580.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 117 LNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLQNNPSAKVVYVSSEKFTNELI 196
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 197 NAIKDDKNEEFRTKYRNVDVLLIDDIQFIAGKERTQEEFFHTFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLI 276
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 277 ADIQVPDFETRMAILKKKADVEKLNVANEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREITVDLASEALKDIIsKKQ 356
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLL-RAQ 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 786014782 357 GKHITIEIIQDVVANYFNLRVEDLKSQRRTRNVSYPRQIAMYLSRKLTDMSLPKIGEEFGGRDH 420
Cdd:COG0593 240 KKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
117-454 |
3.04e-177 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 509.75 E-value: 3.04e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 117 LNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLQNNPSAKVVYVSSEKFTNELI 196
Cdd:PRK14086 281 LNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 197 NAIKDDKNEEFRTKYRNVDVLLIDDIQFIAGKERTQEEFFHTFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLI 276
Cdd:PRK14086 361 NSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLI 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 277 ADIQVPDFETRMAILKKKADVEKLNVANEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREITVDLASEALKDIISKKQ 356
Cdd:PRK14086 441 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPEDS 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 357 GKHITIEIIQDVVANYFNLRVEDLKSQRRTRNVSYPRQIAMYLSRKLTDMSLPKIGEEFgGRDHTTVIHAYEKISDNLNR 436
Cdd:PRK14086 521 APEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQF-GRDHTTVMHADRKIRALMAE 599
|
330
....*....|....*...
gi 786014782 437 DESLQHTIDDLTKKLTQG 454
Cdd:PRK14086 600 RRSIYNQVTELTNRIKNG 617
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
117-335 |
2.48e-133 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 382.83 E-value: 2.48e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 117 LNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLQNNPSAKVVYVSSEKFTNELI 196
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 197 NAIKDDKNEEFRTKYRNVDVLLIDDIQFIAGKERTQEEFFHTFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLI 276
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 786014782 277 ADIQVPDFETRMAILKKKADVEKLNVANEVMVYIATKIKSNIRELEGALIRIVAYSSLT 335
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
116-452 |
4.25e-77 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 247.06 E-value: 4.25e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 116 NLNPKYTFDSFVIGNSNRFAHAASLAVAESPAKA----YNPLFIYGGVGLGKTHLMHAIGHYVlqNNPSAKVVYVSSEKF 191
Cdd:PRK12422 103 ELDPLMTFANFLVTPENDLPHRILQEFTKVSEQGkgfpFNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRSELF 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 192 TNELINAIKDDKNEEFRTKYRNVDVLLIDDIQFIAGKERTQEEFFHTFNALHDANKQIILSSDRPPKEIPTLEDRLRSRF 271
Cdd:PRK12422 181 TEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRF 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 272 EWGLIADIQVPDFETRMAILKKKADVEKLNVANEVMVYIATKIKSNIRELEGA---LIRIVAYSSLTNREITVDLASEAL 348
Cdd:PRK12422 261 EWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHAltlLAKRVAYKKLSHQLLYVDDIKALL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 349 KDIISKKQGKHITIEIIQDVVANYFNLRVEDLKSQRRTRNVSYPRQIAMYLSRKLTDMSLPKIGEEFgGRDHTTVIHAYE 428
Cdd:PRK12422 341 HDVLEAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF-SRDHSTVISSIR 419
|
330 340
....*....|....*....|....*..
gi 786014782 429 KISDNL---NRDESLQhtIDDLTKKLT 452
Cdd:PRK12422 420 AISQKLeedDRDISMA--IQEITKRLS 444
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
362-451 |
1.86e-41 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 142.27 E-value: 1.86e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 362 IEIIQDVVANYFNLRVEDLKSQRRTRNVSYPRQIAMYLSRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISDNLNRDESLQ 441
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 786014782 442 HTIDDLTKKL 451
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
362-430 |
3.89e-38 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 132.91 E-value: 3.89e-38
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 786014782 362 IEIIQDVVANYFNLRVEDLKSQRRTRNVSYPRQIAMYLSRKLTDMSLPKIGEEFGGRDHTTVIHAYEKI 430
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
361-429 |
8.74e-36 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 126.47 E-value: 8.74e-36
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 786014782 361 TIEIIQDVVANYFNLRVEDLKSQRRTRNVSYPRQIAMYLSRKLTDMSLPKIGEEFGGRDHTTVIHAYEK 429
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
122-349 |
8.48e-29 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 113.05 E-value: 8.48e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 122 TFDSFVIGNSnrfahAASLAVAESPAKAYNPLFIY--GGVGLGKTHLMHAIGHYVLQNNPSAkvVYVSSEKFTNELINAI 199
Cdd:TIGR03420 13 TFDNFYAGGN-----AELLAALRQLAAGKGDRFLYlwGESGSGKSHLLQAACAAAEERGKSA--IYLPLAELAQADPEVL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 200 KDDknEEFrtkyrnvDVLLIDDIQFIAGKERTQEEFFHTFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADI 279
Cdd:TIGR03420 86 EGL--EQA-------DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 280 QVPDFETRMAILKKKADVEKLNVANEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREITVDLASEALK 349
Cdd:TIGR03420 157 PPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
132-275 |
1.32e-19 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 85.28 E-value: 1.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 132 NRFAHAASLAVAESPAKayNPLFIYGGVGLGKTHLMHAIGHYVlqNNPSAKVVYVSSEKFTNELINAIKDD----KNEEF 207
Cdd:cd00009 3 QEEAIEALREALELPPP--KNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAELFGhflvRLLFE 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 786014782 208 RTKYRNVDVLLIDDIQFI-AGKERTQEEFFHTFNALHD--ANKQIILSSDRPP--KEIPTLEDRLRSRFEWGL 275
Cdd:cd00009 79 LAEKAKPGVLFIDEIDSLsRGAQNALLRVLETLNDLRIdrENVRVIGATNRPLlgDLDRALYDRLDIRIVIPL 151
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
122-349 |
6.52e-15 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 73.94 E-value: 6.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 122 TFDSFVIGNsNRFAHAASLAVAESPAKAYnpLFIYGGVGLGKTHLMHAIGHYVLQNNPSakVVYVSSEK---FTNELINA 198
Cdd:PRK08084 20 TFASFYPGD-NDSLLAALQNALRQEHSGY--IYLWSREGAGRSHLLHAACAELSQRGRA--VGYVPLDKrawFVPEVLEG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 199 IKddkneefrtkyrNVDVLLIDDIQFIAGKERTQEEFFHTFNALHDANK-QIILSSDRPPKEIPTLEDRLRSRFEWGLIA 277
Cdd:PRK08084 95 ME------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRtRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 786014782 278 DIQVPDFETRMAILKKKADVEKLNVANEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREITVDLASEALK 349
Cdd:PRK08084 163 KLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
122-350 |
4.09e-14 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 71.55 E-value: 4.09e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 122 TFDSFVIGnSNRFAHAAsLAVAESPAKAYNPLFIYGGVGLGKTHLMHAIGHYVLQNNPSAkvVYVSSekftneliNAIKD 201
Cdd:PRK08903 16 TFDNFVAG-ENAELVAR-LRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNA--RYLDA--------ASPLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 202 DKNEEFRTKYRNVD-VLLIDDIQFIAgkertqeeFFHTFNALHDANKQIIL-SSDRPPKEIPTLEDrLRSRFEWGLIADI 279
Cdd:PRK08903 84 AFDFDPEAELYAVDdVERLDDAQQIA--------LFNLFNRVRAHGQGALLvAGPAAPLALPLRED-LRTRLGWGLVYEL 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 786014782 280 QVPDFETRMAILKKKADVEKLNVANEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREITVDLASEALKD 350
Cdd:PRK08903 155 KPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQ 225
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
148-259 |
3.32e-13 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 69.04 E-value: 3.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 148 KAYNpLFIYGGVGLGKTHLMHAIGHYVLQNNPsaKVVYVSSEKFTNELINAIKDDKNEEFRTKYRNVDVLLIDDIQFIAG 227
Cdd:COG1484 98 RGEN-LILLGPPGTGKTHLAIALGHEACRAGY--RVRFTTAPDLVNELKEARADGRLERLLKRLAKVDLLILDELGYLPL 174
|
90 100 110
....*....|....*....|....*....|..
gi 786014782 228 KERTQEEFFHTFNALHDaNKQIILSSDRPPKE 259
Cdd:COG1484 175 DAEGAELLFELISDRYE-RRSTIITSNLPFSE 205
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
7-69 |
6.99e-12 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 60.37 E-value: 6.99e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 786014782 7 ELWEKTLNIIKGELSEVSFNTWIKSCEPISMS-SDTIRISVPNAFTQEILEKRYKDLVANSIRA 69
Cdd:pfam11638 2 ELWERVLERLRKEVGEQTFNTWIKPLTLVDLDdGGSLTLSVPNRFVRDWVEEHYLDRILELWQE 65
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
153-270 |
2.99e-10 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 61.45 E-value: 2.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 153 LFIYGGVGLGKTHLMHAIGHYVLQNNPSakVVYVSSEKFTNEL-INAIKDDKNEEFRTKY-RNVDVLLIDDIqfiaGKER 230
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKELLDRGKS--VIYRTADELIEILrEIRFNNDKELEEVYDLlINCDLLIIDDL----GTEK 259
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 786014782 231 TQE----EFFHTFNALHDANKQIILSSDRPPKEIPTL-EDRLRSR 270
Cdd:PRK06835 260 ITEfsksELFNLINKRLLRQKKMIISTNLSLEELLKTySERISSR 304
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
151-276 |
3.66e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.15 E-value: 3.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 151 NPLFIYGGVGLGKTHLMHAIGHYVLQnnPSAKVVYVSSEKFTNELINAIKDDKNEEF---------------RTKYRNVD 215
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEEVLDQLLLIIVGGKkasgsgelrlrlalaLARKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 786014782 216 VLLIDDIQFIAGKERTQEEFFH-----TFNALHDANKQIILSSDRPPKEIP-TLEDRLRSRFEWGLI 276
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLeelrlLLLLKSEKNLTVILTTNDEKDLGPaLLRRRFDRRIVLLLI 147
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
89-307 |
4.09e-08 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 54.26 E-value: 4.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 89 EEEKSEKQSNKKIKENTKVIVSDEMNTNLNPKYTFDSFVIGNSNRFAHAASLAVAES--PAKAYN-PLFIYGGVGLGKTH 165
Cdd:PRK08116 50 EEAKEREEENREKQRRIERLKSNSLLDEKFRNSTFENFLFDKGSEKAYKIARKYVKKfeEMKKENvGLLLWGSVGTGKTY 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 166 LMHAIGHYVLQNnpSAKVVYVSsekfTNELINAIKD---DKNEEFRTKY----RNVDVLLIDDIqfiaGKER----TQEE 234
Cdd:PRK08116 130 LAACIANELIEK--GVPVIFVN----FPQLLNRIKStykSSGKEDENEIirslVNADLLILDDL----GAERdtewAREK 199
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 786014782 235 FFHTFNALHDANKQIILSSDRPPKEIPT-LEDRLRSR-FEWGLIADIQVPDFetrmailKKKADVEKLNVANEVM 307
Cdd:PRK08116 200 VYNIIDSRYRKGLPTIVTTNLSLEELKNqYGKRIYDRiLEMCTPVENEGKSY-------RKEIAKEKLQRLKELL 267
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
361-432 |
2.89e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 49.00 E-value: 2.89e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 786014782 361 TIEIIQDVVANYFNLRVEDLKSQRRTRN-VSYPRQIAMYLSRKLTDMSLPKIGEEFgGRDHTTVIHAYEKISD 432
Cdd:PRK06030 24 LCEAVIDLLALAFGVSGAEIASPLRGRReVSRIRQIAMYVAHVSLGWPMNEVALAF-GRDRTTVGHACHTVED 95
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
147-222 |
7.07e-07 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 50.64 E-value: 7.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 147 AKAYNP------LFIYGGVGLGKTHLMHAIGHYVLQNNPSAKVVYVSSekFTNELINAIKDDKNEEFRTKYRNVDVLLID 220
Cdd:PRK08939 147 LEAYPPgekvkgLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE--FIRELKNSISDGSVKEKIDAVKEAPVLMLD 224
|
..
gi 786014782 221 DI 222
Cdd:PRK08939 225 DI 226
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
9-132 |
5.69e-06 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 48.22 E-value: 5.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 9 WEKTLNIIKGELSEVSFNTWIKSCEpISMSSDTIRISVPNAFTQEILEKRYKDLVANSIRaicsKLYNIEFLIASEIQNT 88
Cdd:PRK06672 5 WTEVKEKIRPQISKPSYETWFTNTT-VYLEDDILTIYCPNEFARDWLESHYKELVFNTLR----EMFNTTFEIQFDLCNG 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 786014782 89 EEeksekqSNKKIKENTKVIVSDEMNTNLNPKYTFDSFV--IGNSN 132
Cdd:PRK06672 80 EP------SNLKDVQKEKLSSWDEVKKALRPKIAEKTFMtwIRNTN 119
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
4-107 |
9.44e-06 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 47.45 E-value: 9.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 4 ELKELWEKTLNIIKGELSEVSFNTWIKSCEPiSMSSDTIRISVPNAFTQEILEKRYKDLVANSIRAICSKLYNIEFLIAS 83
Cdd:PRK06672 190 ESKTIWNKIKDKMQLKISRPSYETWVKETTA-RINEDSLIIYFENEFQQEWVKKSYKDLISQIAKELTGNTYEIQFELKS 268
|
90 100
....*....|....*....|....
gi 786014782 84 EIQNTEEEKSEKQSNKKIKENTKV 107
Cdd:PRK06672 269 NTTSNNEKSTIKDITSELGEQFKV 292
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
151-270 |
2.30e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 45.93 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 151 NPLFIYGGVGLGKTHLMHAIGHYVLQNNPSAKVVYVSSEKFTNelinaIKDDKN--EEFRTKYRNVDVLLIDDI-QFIAG 227
Cdd:PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD-----LKDDFDllEAKLNRMKKVEVLFIDDLfKPVNG 192
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 786014782 228 KERTQ----EEFFHTFNALHDANKQIILSSDRPPKEIPTLEDRLRSR 270
Cdd:PRK06921 193 KPRATewqiEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSR 239
|
|
| PRK08181 |
PRK08181 |
transposase; Validated |
117-294 |
1.89e-04 |
|
transposase; Validated
Pssm-ID: 136670 [Multi-domain] Cd Length: 269 Bit Score: 42.99 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 117 LNPKYTFDSFVIGNSNRFAHAASLAVAESP---AKAYNpLFIYGGVGLGKTHLMHAIGHYVLQNnpSAKVVYVSSEKFTN 193
Cdd:PRK08181 71 LPPGKTLDSFDFEAVPMVSKAQVMAIAAGDswlAKGAN-LLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRTTDLVQ 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 194 ELINAIKDDKNEEFRTKYRNVDVLLIDDIQFIAGKERTQEEFFHTFNALHDaNKQIILSSDRP--------PKEIPTLE- 264
Cdd:PRK08181 148 KLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYE-RRSILITANQPfgewnrvfPDPAMTLAa 226
|
170 180 190
....*....|....*....|....*....|.
gi 786014782 265 -DRLrsrFEWGLIADIQVPDFETRMAILKKK 294
Cdd:PRK08181 227 vDRL---VHHATIFEMNVESYRRRTALERKR 254
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
9-110 |
2.24e-04 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 43.21 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 9 WEKTLNIIKGELSEVSFNTWIKSCEPiSMSSDTIRISVPNAFTQEILEKRYKDLVANSIRAICSKLYNIEFLIAS----- 83
Cdd:PRK06672 95 WDEVKKALRPKIAEKTFMTWIRNTNA-TIKDNKVIIFCEDAFHRDLLEGEYKNIISSTVQKITDEEYQIWFEIGSsatsk 173
|
90 100 110
....*....|....*....|....*....|....
gi 786014782 84 ----EIQNTEEEKSEKQSN---KKIKENTKVIVS 110
Cdd:PRK06672 174 aqvhHVKNNQRTSGQEESKtiwNKIKDKMQLKIS 207
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
126-349 |
8.65e-04 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 40.60 E-value: 8.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 126 FVIGNSNRFaHAASLAVAESPAKAYN----------------PLFIYGGVGLGKTHLMHaighyVLQNNPSAkvvYVSSE 189
Cdd:PRK06620 5 FRFTTSSKY-HPDEFIVSSSNDQAYNiiknwqcgfgvnpykfTLLIKGPSSSGKTYLTK-----IWQNLSNA---YIIKD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 190 KFTNELInaikddkneefrtkYRNVDVLLIDDIQfiagkERTQEEFFHTFNALHDANKQIILSSDRPPKEIpTLEDrLRS 269
Cdd:PRK06620 76 IFFNEEI--------------LEKYNAFIIEDIE-----NWQEPALLHIFNIINEKQKYLLLTSSDKSRNF-TLPD-LSS 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 270 RFEWGLIADIQVPDFETRMAILKKKADVEKLNVANEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREITVDLASEALK 349
Cdd:PRK06620 135 RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLN 214
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
57-222 |
1.05e-03 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 40.52 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 57 KRYKDLVANSIRAicsKLYNIEFLIAseiqnTEEEKSEKQSNKKIKENTKVIVSDEMN-TNLNPKY---TFDSFVIGNSN 132
Cdd:PRK07952 9 QRLQKMMPAHIKP---AFKTGEELLA-----WQKEQGRIRSAALERENRAMKMQRTFNrSGIRPLHqncSFENYRVECEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 133 rfaHAASLAVAESPAKAYN---PLFIYGG-VGLGKTHLMHAIGHYVLQNNPSAKVVYVSsekftnELINAIKDDKN---- 204
Cdd:PRK07952 81 ---QMNALSKARQYVEEFDgniASFIFSGkPGTGKNHLAAAICNELLLRGKSVLIITVA------DIMSAMKDTFSnset 151
|
170 180
....*....|....*....|
gi 786014782 205 --EEFRTKYRNVDVLLIDDI 222
Cdd:PRK07952 152 seEQLLNDLSNVDLLVIDEI 171
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
153-252 |
1.29e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 38.86 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 153 LFIYGGVGLGKTHLMHAIGHYVLQNNPSAKVVYV----SSEKFTNELINAIKDDKNEEFRTK------------YRNVDV 216
Cdd:pfam13401 8 LVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDLpsgtSPKDLLRALLRALGLPLSGRLSKEellaalqqlllaLAVAVV 87
|
90 100 110
....*....|....*....|....*....|....*....
gi 786014782 217 LLIDDIQFIagkertQEEFFHTFNALHDANK---QIILS 252
Cdd:pfam13401 88 LIIDEAQHL------SLEALEELRDLLNLSSkllQLILV 120
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
138-256 |
4.85e-03 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 38.58 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 138 ASLAVAEspaKAYNPLFIyGGVGLGKTHLMHAIGHYVLQNnpSAKVVYVSSEKFTNELINAIKDDKNEEFRTKYRNVDVL 217
Cdd:pfam01695 84 ASLSFID---RAQNVVLL-GPPGVGKTHLAIALGVEACRA--GYSVRFTSAADLVNQLKRAHGDGKLTRKLQQLLKPDVL 157
|
90 100 110
....*....|....*....|....*....|....*....
gi 786014782 218 LIDDIQFIAGKERTQEEFFHTFNALHDaNKQIILSSDRP 256
Cdd:pfam01695 158 ILDEWGYLPLDQAEANLLFQVISKRYE-HRSIILTSNLP 195
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
79-222 |
5.12e-03 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 38.66 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 786014782 79 FLIASEIQNTEEEKSEKQSNKKIKENTKVIVSDEMN----TNLNPKYTFDSF-VIGNSNRFAHAASLAVAESPAKAYNPL 153
Cdd:PRK12377 25 FRTVDEWREWQLAEGRKRSEEINRQNQQLRVEKILNrsgiQPLHRKCSFANYqVQNDGQRYALSQAKSIADELMTGCTNF 104
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 786014782 154 FIYGGVGLGKTHLMHAIGHYVLQNNPSAKVVYVSsekftnELINAIK---DDKN--EEFRTKYRNVDVLLIDDI 222
Cdd:PRK12377 105 VFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP------DVMSRLHesyDNGQsgEKFLQELCKVDLLVLDEI 172
|
|
| |
